Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47419 * 2 1 4 4 C 1.50694 * 109.46967 * 239.99688 * 2 1 3 5 5 H 1.08004 * 120.00154 * 239.99932 * 4 2 1 6 6 C 1.37874 * 120.00099 * 60.00337 * 4 2 1 7 7 N 1.31510 * 120.00340 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 59.99815 * 8 6 4 10 10 H 1.48507 * 109.47273 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46926 * 299.99819 * 8 6 4 12 12 N 1.46904 * 109.46815 * 119.99741 * 2 1 3 13 13 C 1.47843 * 110.99640 * 179.15414 * 12 2 1 14 14 C 1.54916 * 104.79337 * 146.36598 * 13 12 2 15 15 C 1.55398 * 101.74107 * 323.02060 * 14 13 12 16 16 H 1.09005 * 110.67856 * 277.17709 * 15 14 13 17 17 C 1.52992 * 110.84620 * 153.86232 * 15 14 13 18 18 C 1.53001 * 109.47290 * 71.46252 * 17 15 14 19 19 N 1.46900 * 109.47483 * 179.97438 * 18 17 15 20 20 C 1.46897 * 111.00343 * 170.00212 * 19 18 17 21 21 C 1.46900 * 110.99915 * 293.95931 * 19 18 17 22 22 C 1.47439 * 111.00045 * 300.00122 * 12 2 1 23 23 H 1.08997 * 109.47419 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47308 * 300.00508 * 1 2 3 25 25 H 1.08998 * 109.47024 * 60.00107 * 1 2 3 26 26 H 0.96999 * 120.00883 * 179.97438 * 7 6 4 27 27 H 1.08996 * 110.37823 * 265.19398 * 13 12 2 28 28 H 1.09001 * 110.37314 * 27.42672 * 13 12 2 29 29 H 1.08995 * 110.98807 * 81.01940 * 14 13 12 30 30 H 1.08997 * 110.99076 * 204.80412 * 14 13 12 31 31 H 1.09000 * 109.47442 * 191.46215 * 17 15 14 32 32 H 1.09003 * 109.47234 * 311.46145 * 17 15 14 33 33 H 1.08998 * 109.47349 * 300.00195 * 18 17 15 34 34 H 1.08997 * 109.46889 * 60.00227 * 18 17 15 35 35 H 1.08997 * 109.47168 * 60.00113 * 20 19 18 36 36 H 1.08997 * 109.47504 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46897 * 300.00371 * 20 19 18 38 38 H 1.09003 * 109.47733 * 59.99796 * 21 19 18 39 39 H 1.09004 * 109.47024 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.47193 * 299.99475 * 21 19 18 41 41 H 1.09002 * 109.88998 * 356.14887 * 22 12 2 42 42 H 1.09003 * 109.88733 * 117.17548 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4194 -5.2205 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 3.4974 -0.7299 1.2235 14 6 3.8711 -0.6369 2.7241 15 6 2.7924 0.3458 3.2583 16 1 3.0871 1.3788 3.0730 17 6 2.5351 0.1141 4.7486 18 6 3.7382 0.6050 5.5562 19 7 3.4910 0.3831 6.9872 20 6 4.7083 0.6194 7.7747 21 6 2.3833 1.2207 7.4661 22 6 1.5468 -0.0239 2.4256 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1612 -3.4844 27 1 3.8603 -1.6660 0.7994 28 1 3.9074 0.1184 0.6754 29 1 3.7847 -1.6093 3.2088 30 1 4.8726 -0.2266 2.8523 31 1 1.6444 0.6636 5.0533 32 1 2.3853 -0.9502 4.9303 33 1 4.6290 0.0556 5.2516 34 1 3.8880 1.6692 5.3746 35 1 5.0389 1.6483 7.6326 36 1 4.4973 0.4477 8.8302 37 1 5.4921 -0.0628 7.4455 38 1 1.4767 0.9757 6.9126 39 1 2.2212 1.0364 8.5281 40 1 2.6296 2.2714 7.3128 41 1 0.9931 0.8784 2.1660 42 1 0.9081 -0.7000 2.9939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701503554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -19.403805 kcal Electronic energy + Delta-G solvation = -17819.552102 eV Core-core repulsion = 15219.322526 eV Total energy + Delta-G solvation = -2600.229576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21278 -38.41996 -35.95754 -33.85749 -31.80010 -29.56499 -28.64797 -28.37500 -27.10045 -24.86864 -22.95810 -22.17745 -21.25910 -20.61417 -18.45375 -17.25438 -16.57794 -16.39515 -16.18147 -15.85986 -15.33213 -14.85608 -14.72056 -14.39655 -13.97492 -13.87174 -13.29034 -13.20461 -13.01719 -12.78806 -12.73127 -12.59525 -12.58733 -12.45531 -12.21530 -12.13986 -12.01214 -11.62367 -11.48996 -11.42215 -11.19182 -10.93803 -10.52751 -9.29338 -8.88791 -8.11864 -6.24202 1.41332 1.43601 1.51235 2.42002 3.02406 3.15905 3.47522 3.69810 3.93192 3.98002 4.19839 4.28842 4.43548 4.52100 4.54048 4.61339 4.65064 4.70044 4.76364 4.78837 4.81140 4.90170 4.98963 5.02307 5.02935 5.06159 5.09365 5.13991 5.19536 5.26821 5.33173 5.47775 5.54118 5.72298 5.78471 6.09952 6.13548 6.25109 6.41913 6.73404 6.90966 7.45457 8.94036 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052994 B = 0.004436 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.234030 B = 6310.815628 C = 6643.087381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.213 3.787 3 H -0.039 1.039 4 C -0.520 4.520 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.538 5.538 13 C 0.055 3.945 14 C -0.110 4.110 15 C -0.098 4.098 16 H 0.064 0.936 17 C -0.089 4.089 18 C 0.060 3.940 19 N -0.563 5.563 20 C 0.023 3.977 21 C 0.020 3.980 22 C 0.046 3.954 23 H 0.029 0.971 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.024 0.976 41 H 0.033 0.967 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 0.465 17.987 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.262 5.262 13 C -0.072 4.072 14 C -0.148 4.148 15 C -0.118 4.118 16 H 0.083 0.917 17 C -0.127 4.127 18 C -0.068 4.068 19 N -0.287 5.287 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.082 4.082 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.394 -0.413 17.887 18.687 hybrid contribution 0.531 1.563 -1.373 2.147 sum 5.925 1.151 16.514 17.583 Atomic orbital electron populations 1.21663 0.97465 0.99124 0.99650 1.19200 0.92588 0.89909 0.87724 1.02193 1.21376 1.31126 1.12261 0.91114 0.92685 1.25738 0.95355 0.95776 1.01969 1.70010 1.37786 1.24239 1.24129 0.85566 0.78735 0.78695 0.78368 1.19663 1.20814 1.19628 1.63605 1.08776 1.51721 1.02123 1.22776 0.88225 0.99565 0.96680 1.22801 0.98591 0.99903 0.93476 1.22336 0.95155 0.98907 0.95415 0.91734 1.21404 0.97877 1.02108 0.91320 1.22109 0.98827 0.98706 0.87155 1.62000 1.07515 1.55811 1.03351 1.22422 0.91750 0.99591 0.98684 1.22475 0.94508 0.94342 1.01522 1.22874 0.97326 0.96795 0.91243 0.95169 0.95275 0.92157 0.92906 0.92016 0.96263 0.90008 0.89723 0.91743 0.91063 0.90297 0.95243 0.95651 0.90404 0.90991 0.91229 0.90409 0.95729 0.94807 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.84 71.98 0.64 -5.57 16 2 C 0.21 11.35 1.64 44.17 0.07 11.42 16 3 H -0.04 -2.33 8.10 -2.39 -0.02 -2.35 16 4 C -0.52 -29.71 8.07 25.60 0.21 -29.50 16 5 H 0.05 3.13 7.22 -2.91 -0.02 3.11 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.35 11.32 21.45 0.24 -54.11 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.54 -24.03 5.02 -864.74 -4.34 -28.37 16 13 C 0.06 2.21 5.69 86.78 0.49 2.70 16 14 C -0.11 -3.19 5.95 32.07 0.19 -3.00 16 15 C -0.10 -2.84 2.93 -9.52 -0.03 -2.87 16 16 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 17 C -0.09 -2.06 4.50 30.59 0.14 -1.92 16 18 C 0.06 1.23 4.85 86.30 0.42 1.65 16 19 N -0.56 -10.86 5.02 -948.85 -4.76 -15.62 16 20 C 0.02 0.36 9.57 127.69 1.22 1.58 16 21 C 0.02 0.33 9.32 127.69 1.19 1.52 16 22 C 0.05 1.68 5.73 86.65 0.50 2.17 16 23 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.03 1.31 6.50 -2.39 -0.02 1.30 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.06 2.50 7.89 -2.39 -0.02 2.48 16 28 H 0.02 0.84 7.76 -2.39 -0.02 0.82 16 29 H 0.08 2.22 7.95 -2.39 -0.02 2.20 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.45 6.55 -2.39 -0.02 1.44 16 32 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 33 H 0.08 1.56 7.61 -2.39 -0.02 1.54 16 34 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 37 H 0.07 1.03 8.12 -2.38 -0.02 1.01 16 38 H 0.07 1.21 6.47 -2.39 -0.02 1.20 16 39 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 40 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.03 1.33 6.35 -2.39 -0.02 1.31 16 42 H 0.07 2.52 7.82 -2.39 -0.02 2.50 16 Total: -1.00 -62.67 320.41 -0.40 -63.08 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.95 Total: 9.21 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.49 Total: -20.79 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -8.86 Total: -98.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.67 -0.40 -63.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.672 kcal (2) G-P(sol) polarization free energy of solvation -62.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds