Wall clock time and date at job start Mon Mar 30 2020 03:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47162 * 2 1 4 4 C 1.46906 * 111.00403 * 199.77049 * 3 2 1 5 5 C 1.50701 * 109.46783 * 66.04650 * 4 3 2 6 6 H 1.07998 * 120.00487 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99829 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47358 * 89.99670 * 9 7 5 11 11 H 1.48496 * 109.47082 * 210.00321 * 9 7 5 12 12 H 1.48506 * 109.47285 * 329.99951 * 9 7 5 13 13 C 1.46898 * 110.99832 * 75.81766 * 3 2 1 14 14 C 1.53010 * 109.47172 * 199.66085 * 13 3 2 15 15 C 1.53000 * 109.47040 * 175.19414 * 14 13 3 16 16 C 1.53115 * 109.52036 * 175.00121 * 15 14 13 17 17 C 1.53032 * 109.27984 * 177.55630 * 16 15 14 18 18 N 1.46846 * 109.52692 * 300.82017 * 17 16 15 19 19 C 1.46852 * 111.19409 * 61.73656 * 18 17 16 20 20 C 1.53030 * 109.52570 * 298.26074 * 19 18 17 21 21 H 1.09004 * 109.46807 * 294.84692 * 1 2 3 22 22 H 1.08998 * 109.47132 * 54.84557 * 1 2 3 23 23 H 1.08996 * 109.46864 * 174.85004 * 1 2 3 24 24 H 1.09005 * 109.46996 * 240.00212 * 2 1 3 25 25 H 1.08997 * 109.47762 * 120.00221 * 2 1 3 26 26 H 1.08998 * 109.47296 * 186.04404 * 4 3 2 27 27 H 1.09000 * 109.46784 * 306.05187 * 4 3 2 28 28 H 0.96999 * 119.99419 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47268 * 79.66379 * 13 3 2 30 30 H 1.08997 * 109.47447 * 319.65792 * 13 3 2 31 31 H 1.09001 * 109.46895 * 55.19340 * 14 13 3 32 32 H 1.09002 * 109.46747 * 295.19530 * 14 13 3 33 33 H 1.08995 * 109.57601 * 54.84010 * 15 14 13 34 34 H 1.08999 * 109.50523 * 57.61514 * 16 15 14 35 35 H 1.09004 * 109.50468 * 297.49771 * 16 15 14 36 36 H 1.09000 * 109.46782 * 180.80231 * 17 16 15 37 37 H 1.09001 * 109.46199 * 60.83435 * 17 16 15 38 38 H 1.00892 * 111.00458 * 185.83535 * 18 17 16 39 39 H 1.09004 * 109.46029 * 58.28251 * 19 18 17 40 40 H 1.09005 * 109.46203 * 178.24405 * 19 18 17 41 41 H 1.09000 * 109.50578 * 299.24187 * 20 19 18 42 42 H 1.09004 * 109.50418 * 179.12107 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4120 1.4512 -0.4639 5 6 3.4778 1.0477 -1.9144 6 1 2.5758 0.7694 -2.4390 7 6 4.6899 1.0327 -2.5714 8 7 5.7885 1.3711 -1.9324 9 14 4.7718 0.5318 -4.3691 10 1 4.6037 1.7330 -5.2258 11 1 6.0884 -0.0955 -4.6487 12 1 3.6881 -0.4405 -4.6619 13 6 1.8783 1.9933 1.3296 14 6 1.9208 3.5173 1.2004 15 6 1.6541 4.1526 2.5665 16 6 1.8192 5.6714 2.4654 17 6 1.4920 6.3064 3.8188 18 7 0.1139 5.9701 4.1984 19 6 -0.0566 4.5192 4.3476 20 6 0.2243 3.8309 3.0101 21 1 -0.3633 0.4318 0.9326 22 1 -0.3633 0.5917 -0.8402 23 1 -0.3633 -1.0235 -0.0922 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.7839 2.4697 -0.3529 27 1 4.0254 0.7736 0.1300 28 1 6.6411 1.3609 -2.3948 29 1 2.6948 1.6601 1.9702 30 1 0.9267 1.6922 1.7677 31 1 1.1583 3.8433 0.4930 32 1 2.9036 3.8243 0.8425 33 1 2.3598 3.7573 3.2971 34 1 1.1406 6.0616 1.7068 35 1 2.8473 5.9084 2.1913 36 1 1.5947 7.3892 3.7464 37 1 2.1797 5.9263 4.5741 38 1 -0.1577 6.4546 5.0406 39 1 0.6384 4.1474 5.1006 40 1 -1.0787 4.3038 4.6593 41 1 -0.4793 4.1921 2.2600 42 1 0.1129 2.7527 3.1251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702624547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:02 Heat of formation + Delta-G solvation = -21.098178 kcal Electronic energy + Delta-G solvation = -17849.254200 eV Core-core repulsion = 15248.951150 eV Total energy + Delta-G solvation = -2600.303049 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88150 -36.91403 -33.71270 -32.53861 -30.80811 -30.22435 -28.49648 -26.10007 -23.68979 -22.84314 -22.34812 -21.02145 -19.54591 -19.43339 -16.69616 -16.38184 -15.06927 -14.64358 -14.45812 -14.31437 -14.13747 -13.90227 -13.60837 -13.21761 -12.69407 -12.41482 -12.17305 -12.11687 -11.91720 -11.33178 -11.16985 -11.14272 -10.95429 -10.82462 -10.64968 -10.49690 -10.30355 -10.19927 -9.97900 -9.87331 -9.50440 -9.10081 -8.55724 -8.39180 -7.14890 -5.99126 -3.99757 3.34329 3.40080 3.43803 4.13471 4.45607 4.77354 4.89494 4.92089 5.16627 5.23511 5.36348 5.39363 5.49536 5.56307 5.66112 5.77210 5.79039 5.85629 5.90249 6.00452 6.05722 6.12861 6.15485 6.23525 6.33819 6.36356 6.43100 6.48634 6.72214 6.77513 6.87010 6.89829 6.94346 7.26521 7.38681 7.42785 7.86691 8.18069 8.30531 8.63567 9.08615 9.64190 11.11827 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.005117 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.797695 B = 5470.468824 C = 6136.357183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 N -0.537 5.537 4 C 0.192 3.808 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.056 3.944 14 C -0.104 4.104 15 C -0.087 4.087 16 C -0.112 4.112 17 C 0.058 3.942 18 N -0.691 5.691 19 C 0.057 3.943 20 C -0.112 4.112 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.015 0.985 26 H 0.032 0.968 27 H -0.013 1.013 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.337 0.663 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 5.659 11.871 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.262 5.262 4 C 0.067 3.933 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.072 4.072 14 C -0.142 4.142 15 C -0.106 4.106 16 C -0.150 4.150 17 C -0.071 4.071 18 N -0.322 5.322 19 C -0.072 4.072 20 C -0.149 4.149 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.154 0.846 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.170 5.938 10.860 16.020 hybrid contribution 1.249 -0.862 0.505 1.600 sum -8.921 5.076 11.365 15.314 Atomic orbital electron populations 1.21784 0.96731 1.00127 1.01330 1.21953 0.94138 0.90565 1.00650 1.62122 1.25229 1.16525 1.22314 1.19745 0.81653 0.96773 0.95145 1.21199 0.93225 1.44417 0.95561 0.91893 1.24988 0.95656 0.95680 0.98314 1.69966 0.98419 1.49020 1.36552 0.86523 0.77184 0.78721 0.85138 1.20646 1.21387 1.19877 1.22081 0.99122 0.94729 0.91312 1.21551 1.02602 0.94902 0.95185 1.21182 0.96349 0.95011 0.98045 1.21634 1.01527 0.95210 0.96645 1.21937 0.88303 0.99882 0.96982 1.60281 1.24095 1.08139 1.39678 1.21953 1.00273 0.87676 0.97279 1.21682 0.97220 0.99579 0.96468 0.93937 0.92176 0.93582 0.89786 0.96711 0.95017 0.99508 0.93017 0.96283 0.92238 0.91365 0.91661 0.92063 0.91064 0.91515 0.91092 0.95497 0.84554 0.95546 0.91160 0.91067 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.96 37.16 0.37 -1.94 16 2 C 0.06 1.11 5.51 -3.83 -0.02 1.08 16 3 N -0.54 -11.78 4.36 -236.07 -1.03 -12.81 16 4 C 0.19 5.08 4.55 -4.97 -0.02 5.06 16 5 C -0.51 -14.36 8.23 -34.44 -0.28 -14.64 16 6 H 0.06 1.78 7.31 -52.49 -0.38 1.39 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.03 4.67 -3.82 -0.02 1.01 16 14 C -0.10 -1.76 4.72 -26.73 -0.13 -1.89 16 15 C -0.09 -1.18 2.25 -90.50 -0.20 -1.39 16 16 C -0.11 -1.41 5.38 -26.66 -0.14 -1.55 16 17 C 0.06 0.62 6.55 -3.84 -0.03 0.60 16 18 N -0.69 -7.24 6.85 -113.82 -0.78 -8.01 16 19 C 0.06 0.61 6.55 -3.83 -0.03 0.58 16 20 C -0.11 -1.37 5.08 -26.65 -0.14 -1.51 16 21 H 0.04 0.63 6.90 -51.93 -0.36 0.27 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.85 6.58 -51.93 -0.34 1.51 16 25 H 0.01 0.29 8.00 -51.93 -0.42 -0.13 16 26 H 0.03 0.89 6.71 -51.93 -0.35 0.54 16 27 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 30 H 0.06 0.98 4.84 -51.93 -0.25 0.72 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.24 6.94 -51.93 -0.36 0.88 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.34 2.81 8.90 -39.30 -0.35 2.46 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.81 6.60 -51.93 -0.34 0.47 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -29.85 321.03 -9.76 -39.61 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.77 Total: -1.06 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.73 Total: -13.11 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.07 Total: -47.11 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.85 -9.76 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702624547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.509 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds