Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47162 * 2 1 4 4 C 1.46906 * 111.00403 * 199.77049 * 3 2 1 5 5 C 1.50701 * 109.46783 * 66.04650 * 4 3 2 6 6 H 1.07998 * 120.00487 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99829 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47358 * 89.99670 * 9 7 5 11 11 H 1.48496 * 109.47082 * 210.00321 * 9 7 5 12 12 H 1.48506 * 109.47285 * 329.99951 * 9 7 5 13 13 C 1.46898 * 110.99832 * 75.81766 * 3 2 1 14 14 C 1.53010 * 109.47172 * 199.66085 * 13 3 2 15 15 C 1.53000 * 109.47040 * 175.19414 * 14 13 3 16 16 C 1.53115 * 109.52036 * 175.00121 * 15 14 13 17 17 C 1.53032 * 109.27984 * 177.55630 * 16 15 14 18 18 N 1.46846 * 109.52692 * 300.82017 * 17 16 15 19 19 C 1.46852 * 111.19409 * 61.73656 * 18 17 16 20 20 C 1.53030 * 109.52570 * 298.26074 * 19 18 17 21 21 H 1.09004 * 109.46807 * 294.84692 * 1 2 3 22 22 H 1.08998 * 109.47132 * 54.84557 * 1 2 3 23 23 H 1.08996 * 109.46864 * 174.85004 * 1 2 3 24 24 H 1.09005 * 109.46996 * 240.00212 * 2 1 3 25 25 H 1.08997 * 109.47762 * 120.00221 * 2 1 3 26 26 H 1.08998 * 109.47296 * 186.04404 * 4 3 2 27 27 H 1.09000 * 109.46784 * 306.05187 * 4 3 2 28 28 H 0.96999 * 119.99419 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47268 * 79.66379 * 13 3 2 30 30 H 1.08997 * 109.47447 * 319.65792 * 13 3 2 31 31 H 1.09001 * 109.46895 * 55.19340 * 14 13 3 32 32 H 1.09002 * 109.46747 * 295.19530 * 14 13 3 33 33 H 1.08995 * 109.57601 * 54.84010 * 15 14 13 34 34 H 1.08999 * 109.50523 * 57.61514 * 16 15 14 35 35 H 1.09004 * 109.50468 * 297.49771 * 16 15 14 36 36 H 1.09000 * 109.46782 * 180.80231 * 17 16 15 37 37 H 1.09001 * 109.46199 * 60.83435 * 17 16 15 38 38 H 1.00892 * 111.00458 * 185.83535 * 18 17 16 39 39 H 1.09004 * 109.46029 * 58.28251 * 19 18 17 40 40 H 1.09005 * 109.46203 * 178.24405 * 19 18 17 41 41 H 1.09000 * 109.50578 * 299.24187 * 20 19 18 42 42 H 1.09004 * 109.50418 * 179.12107 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4120 1.4512 -0.4639 5 6 3.4778 1.0477 -1.9144 6 1 2.5758 0.7694 -2.4390 7 6 4.6899 1.0327 -2.5714 8 7 5.7885 1.3711 -1.9324 9 14 4.7718 0.5318 -4.3691 10 1 4.6037 1.7330 -5.2258 11 1 6.0884 -0.0955 -4.6487 12 1 3.6881 -0.4405 -4.6619 13 6 1.8783 1.9933 1.3296 14 6 1.9208 3.5173 1.2004 15 6 1.6541 4.1526 2.5665 16 6 1.8192 5.6714 2.4654 17 6 1.4920 6.3064 3.8188 18 7 0.1139 5.9701 4.1984 19 6 -0.0566 4.5192 4.3476 20 6 0.2243 3.8309 3.0101 21 1 -0.3633 0.4318 0.9326 22 1 -0.3633 0.5917 -0.8402 23 1 -0.3633 -1.0235 -0.0922 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.7839 2.4697 -0.3529 27 1 4.0254 0.7736 0.1300 28 1 6.6411 1.3609 -2.3948 29 1 2.6948 1.6601 1.9702 30 1 0.9267 1.6922 1.7677 31 1 1.1583 3.8433 0.4930 32 1 2.9036 3.8243 0.8425 33 1 2.3598 3.7573 3.2971 34 1 1.1406 6.0616 1.7068 35 1 2.8473 5.9084 2.1913 36 1 1.5947 7.3892 3.7464 37 1 2.1797 5.9263 4.5741 38 1 -0.1577 6.4546 5.0406 39 1 0.6384 4.1474 5.1006 40 1 -1.0787 4.3038 4.6593 41 1 -0.4793 4.1921 2.2600 42 1 0.1129 2.7527 3.1251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702624547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = -41.176945 kcal Electronic energy + Delta-G solvation = -17850.124880 eV Core-core repulsion = 15248.951150 eV Total energy + Delta-G solvation = -2601.173730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97286 -38.50916 -35.08599 -34.50532 -31.77185 -31.67949 -30.14037 -27.85551 -25.08895 -24.23067 -23.79204 -22.29336 -21.15815 -20.53749 -18.57424 -17.56163 -16.91633 -16.07404 -15.95886 -15.51668 -15.50053 -15.21694 -14.85215 -14.49240 -14.21747 -13.95024 -13.76808 -13.50952 -13.02950 -12.93003 -12.69010 -12.61080 -12.50892 -12.33065 -12.17599 -12.08578 -11.84067 -11.54442 -11.53673 -11.24621 -11.00772 -10.93935 -10.59766 -9.36405 -8.98354 -8.20507 -6.30301 1.40185 1.42034 1.52987 2.40203 3.11646 3.28544 3.34459 3.82959 3.91952 3.94290 4.21311 4.31302 4.33959 4.42594 4.50701 4.54615 4.64264 4.66179 4.73598 4.75194 4.77190 4.92912 4.95469 5.03465 5.08542 5.08923 5.18425 5.21333 5.27072 5.29611 5.35231 5.40826 5.48223 5.57919 5.67098 6.08682 6.09966 6.40311 6.57073 6.70044 6.86865 7.39341 8.90824 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.005117 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.797695 B = 5470.468824 C = 6136.357183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.544 5.544 4 C 0.209 3.791 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.059 3.941 14 C -0.095 4.095 15 C -0.080 4.080 16 C -0.113 4.113 17 C 0.062 3.938 18 N -0.697 5.697 19 C 0.060 3.940 20 C -0.109 4.109 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.019 0.981 26 H 0.006 0.994 27 H -0.046 1.046 28 H 0.264 0.736 29 H 0.007 0.993 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.030 0.970 38 H 0.352 0.648 39 H 0.030 0.970 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 5.624 12.284 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 N -0.268 5.268 4 C 0.083 3.917 5 C -0.561 4.561 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.069 4.069 14 C -0.134 4.134 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.067 4.067 18 N -0.330 5.330 19 C -0.069 4.069 20 C -0.146 4.146 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.024 0.976 27 H -0.028 1.028 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.171 0.829 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.003 5.907 11.295 17.508 hybrid contribution 1.811 -0.851 0.417 2.044 sum -10.191 5.056 11.712 16.328 Atomic orbital electron populations 1.21680 0.93165 1.01896 1.01977 1.22030 0.96950 0.89099 0.99575 1.62116 1.21999 1.18141 1.24565 1.19372 0.83844 0.94143 0.94383 1.21486 0.93462 1.44627 0.96480 0.91960 1.25925 0.95122 0.95386 1.03257 1.70098 0.99081 1.49853 1.38639 0.85386 0.77563 0.78661 0.79039 1.19849 1.20730 1.18769 1.22176 1.00026 0.95327 0.89409 1.21454 1.00528 0.94180 0.97189 1.21108 0.97617 0.95550 0.95656 1.21614 1.01056 0.94459 0.97938 1.21876 0.88700 1.00541 0.95566 1.60245 1.23724 1.08277 1.40764 1.21931 1.01408 0.87573 0.96007 1.21641 0.95489 1.00075 0.97424 0.92109 0.92900 0.91020 0.92416 0.96303 0.97638 1.02849 0.92738 0.97427 0.89347 0.92039 0.94804 0.92313 0.91870 0.92136 0.89687 0.95183 0.82867 0.95185 0.89425 0.91791 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.96 71.98 0.72 -3.20 16 2 C 0.05 2.05 5.51 86.30 0.48 2.53 16 3 N -0.54 -24.33 4.36 -900.78 -3.92 -28.25 16 4 C 0.21 11.58 4.55 85.56 0.39 11.97 16 5 C -0.52 -30.46 8.23 25.60 0.21 -30.25 16 6 H 0.06 3.56 7.31 -2.91 -0.02 3.54 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 9 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.06 2.16 4.67 86.31 0.40 2.57 16 14 C -0.10 -3.31 4.72 30.60 0.14 -3.16 16 15 C -0.08 -2.15 2.25 -10.71 -0.02 -2.18 16 16 C -0.11 -2.78 5.38 30.64 0.16 -2.62 16 17 C 0.06 1.23 6.55 86.32 0.57 1.79 16 18 N -0.70 -12.89 6.85 -514.00 -3.52 -16.41 16 19 C 0.06 1.11 6.55 86.32 0.57 1.67 16 20 C -0.11 -2.47 5.08 30.64 0.16 -2.31 16 21 H 0.06 1.61 6.90 -2.39 -0.02 1.60 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 2.58 6.58 -2.38 -0.02 2.57 16 25 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 26 H 0.01 0.33 6.71 -2.39 -0.02 0.32 16 27 H -0.05 -2.80 8.12 -2.39 -0.02 -2.82 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.01 0.29 8.00 -2.39 -0.02 0.28 16 30 H 0.09 2.75 4.84 -2.39 -0.01 2.74 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 1.36 6.94 -2.39 -0.02 1.34 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.35 4.86 8.90 -89.70 -0.80 4.06 16 39 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.54 6.60 -2.38 -0.02 1.52 16 Total: -1.00 -65.47 321.03 -0.73 -66.20 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.17 Total: 11.36 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.23 Total: -22.68 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -7.16 Total: -102.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.47 -0.73 -66.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702624547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds