Wall clock time and date at job start Mon Mar 30 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47257 * 2 1 4 4 C 1.46905 * 111.00079 * 70.36237 * 3 2 1 5 5 H 1.08994 * 109.46897 * 157.78364 * 4 3 2 6 6 C 1.53007 * 109.46883 * 37.78925 * 4 3 2 7 7 C 1.52994 * 109.47234 * 277.78697 * 4 3 2 8 8 C 1.50700 * 109.47268 * 299.19440 * 7 4 3 9 9 H 1.07999 * 119.99602 * 0.02562 * 8 7 4 10 10 C 1.37880 * 120.00127 * 179.97438 * 8 7 4 11 11 N 1.31516 * 119.99725 * 359.72448 * 10 8 7 12 12 Si 1.86797 * 120.00044 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46999 * 269.72486 * 12 10 8 14 14 H 1.48503 * 109.47074 * 29.72521 * 12 10 8 15 15 H 1.48494 * 109.47093 * 149.72398 * 12 10 8 16 16 C 1.46894 * 111.00076 * 194.31664 * 3 2 1 17 17 C 1.53114 * 109.52676 * 171.74988 * 16 3 2 18 18 C 1.53045 * 109.27966 * 182.50572 * 17 16 3 19 19 N 1.46848 * 109.57407 * 59.08431 * 18 17 16 20 20 C 1.46847 * 111.19405 * 298.28726 * 19 18 17 21 21 C 1.53043 * 109.52387 * 61.74723 * 20 19 18 22 22 H 1.08995 * 109.47147 * 159.25986 * 1 2 3 23 23 H 1.09002 * 109.47356 * 279.26333 * 1 2 3 24 24 H 1.09002 * 109.46815 * 39.25887 * 1 2 3 25 25 H 1.08990 * 109.47198 * 239.99481 * 2 1 3 26 26 H 1.09008 * 109.46626 * 120.00040 * 2 1 3 27 27 H 1.09000 * 109.46794 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.46666 * 299.99844 * 6 4 3 29 29 H 1.09000 * 109.47168 * 59.99644 * 6 4 3 30 30 H 1.08998 * 109.47035 * 179.19166 * 7 4 3 31 31 H 1.09000 * 109.47065 * 59.19632 * 7 4 3 32 32 H 0.96998 * 120.00124 * 0.27419 * 11 10 8 33 33 H 1.09001 * 109.52747 * 291.87615 * 16 3 2 34 34 H 1.09007 * 109.50253 * 302.38734 * 17 16 3 35 35 H 1.09002 * 109.50496 * 62.49505 * 17 16 3 36 36 H 1.08998 * 109.40667 * 299.06788 * 18 17 16 37 37 H 1.08998 * 109.45622 * 179.12761 * 18 17 16 38 38 H 1.00895 * 110.99866 * 62.38584 * 19 18 17 39 39 H 1.08991 * 109.46951 * 301.72825 * 20 19 18 40 40 H 1.09001 * 109.45042 * 181.75391 * 20 19 18 41 41 H 1.09000 * 109.50407 * 180.87233 * 21 20 19 42 42 H 1.09004 * 109.53259 * 60.77352 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7606 2.0350 1.2917 5 1 2.4457 2.8729 1.4206 6 6 1.9714 1.0254 2.4220 7 6 0.3187 2.5452 1.3258 8 6 0.1166 3.5542 0.2249 9 1 0.9348 3.8061 -0.4335 10 6 -1.1130 4.1551 0.0576 11 7 -2.1111 3.8436 0.8554 12 14 -1.3637 5.4053 -1.3075 13 1 -1.0529 6.7647 -0.7969 14 1 -0.4624 5.0852 -2.4435 15 1 -2.7749 5.3599 -1.7673 16 6 3.4479 1.4383 -0.3391 17 6 3.8742 2.8964 -0.5313 18 6 5.3468 2.9419 -0.9454 19 7 5.5306 2.1896 -2.1931 20 6 5.1730 0.7761 -2.0183 21 6 3.6947 0.6658 -1.6379 22 1 -0.3633 -0.9610 -0.3639 23 1 -0.3634 0.1654 1.0143 24 1 -0.3633 0.7957 -0.6504 25 1 1.8933 -0.5139 -0.8898 26 1 1.8932 -0.5139 0.8901 27 1 1.7787 1.5076 3.3803 28 1 1.2863 0.1875 2.2930 29 1 2.9987 0.6620 2.3976 30 1 0.1221 3.0147 2.2896 31 1 -0.3660 1.7092 1.1827 32 1 -1.9811 3.1941 1.5640 33 1 4.0306 0.9918 0.4666 34 1 3.2638 3.3543 -1.3098 35 1 3.7409 3.4408 0.4036 36 1 5.9578 2.4973 -0.1599 37 1 5.6491 3.9779 -1.0981 38 1 5.0042 2.6053 -2.9468 39 1 5.7848 0.3417 -1.2278 40 1 5.3491 0.2392 -2.9505 41 1 3.4334 -0.3825 -1.4931 42 1 3.0810 1.0872 -2.4341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709975226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:14 Heat of formation + Delta-G solvation = 3.249584 kcal Electronic energy + Delta-G solvation = -18983.631429 eV Core-core repulsion = 16384.384178 eV Total energy + Delta-G solvation = -2599.247251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54006 -37.11133 -33.26019 -31.51598 -31.34222 -30.22690 -27.71929 -26.98595 -23.59118 -22.94155 -22.59112 -21.04006 -20.13409 -18.77276 -16.74029 -16.24799 -15.81023 -14.61719 -14.55464 -14.10823 -13.67076 -13.58266 -13.33090 -12.92331 -12.61576 -12.54388 -12.14983 -11.85582 -11.78105 -11.58205 -11.16191 -11.07962 -10.99097 -10.75135 -10.70721 -10.63542 -10.27181 -10.14885 -10.03183 -9.58274 -9.22333 -8.38074 -8.34074 -8.11299 -7.43901 -6.15991 -3.79616 3.50919 3.55217 3.70525 4.26572 4.50186 4.67707 4.93716 5.00712 5.24177 5.42177 5.47943 5.51457 5.53553 5.59814 5.72175 5.75408 5.78826 5.85199 5.88314 5.91848 6.00475 6.08232 6.12227 6.20443 6.31685 6.37138 6.50296 6.55758 6.61465 6.61946 6.97013 7.04687 7.09772 7.36071 7.39481 7.61593 7.91335 7.97127 8.47590 8.72781 9.10559 9.87587 11.24210 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.008565 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.463150 B = 3268.424952 C = 3918.925421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.503 5.503 4 C 0.091 3.909 5 H 0.067 0.933 6 C -0.184 4.184 7 C 0.004 3.996 8 C -0.560 4.560 9 H 0.052 0.948 10 C 0.006 3.994 11 N -0.926 5.926 12 Si 1.066 2.934 13 H -0.292 1.292 14 H -0.290 1.290 15 H -0.288 1.288 16 C 0.088 3.912 17 C -0.147 4.147 18 C 0.058 3.942 19 N -0.688 5.688 20 C 0.059 3.941 21 C -0.154 4.154 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.000 1.000 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.341 0.659 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.481 -6.784 -3.068 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.226 5.226 4 C -0.017 4.017 5 H 0.085 0.915 6 C -0.243 4.243 7 C -0.033 4.033 8 C -0.599 4.599 9 H 0.070 0.930 10 C -0.195 4.195 11 N -0.565 5.565 12 Si 0.896 3.104 13 H -0.220 1.220 14 H -0.217 1.217 15 H -0.214 1.214 16 C -0.020 4.020 17 C -0.187 4.187 18 C -0.072 4.072 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.193 4.193 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.791 -5.624 -4.038 13.674 hybrid contribution 0.516 -1.411 1.517 2.135 sum 12.307 -7.036 -2.521 14.399 Atomic orbital electron populations 1.22015 0.94700 1.00817 1.02908 1.22214 0.96704 0.89893 0.99489 1.62305 1.13198 1.15295 1.31822 1.21796 1.01040 0.94297 0.84531 0.91518 1.22544 0.99841 1.01249 1.00637 1.19642 0.90243 0.96946 0.96457 1.21918 0.98808 1.23651 1.15495 0.93012 1.25684 0.92820 0.99939 1.01093 1.70755 1.33295 1.33757 1.18655 0.83576 0.75562 0.75666 0.75564 1.21961 1.21673 1.21427 1.21514 0.89843 0.95408 0.95269 1.22332 0.96511 0.96540 1.03290 1.22029 0.95026 0.98344 0.91807 1.60711 1.60861 1.02721 1.07368 1.22000 0.93886 0.89924 1.01280 1.22447 0.97691 1.00593 0.98553 0.94374 0.92377 0.89977 0.91747 0.95252 0.92820 0.92182 0.94416 0.98201 0.95107 0.92472 0.95577 0.90634 0.91158 0.91552 0.90776 0.84124 0.91467 0.90957 0.91563 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.21 37.16 0.31 -2.44 16 2 C 0.04 0.76 4.92 -3.83 -0.02 0.74 16 3 N -0.50 -9.39 3.82 -218.58 -0.84 -10.22 16 4 C 0.09 1.85 2.08 -67.71 -0.14 1.71 16 5 H 0.07 1.40 5.75 -51.93 -0.30 1.10 16 6 C -0.18 -3.22 7.98 37.16 0.30 -2.92 16 7 C 0.00 0.10 3.44 -27.89 -0.10 0.00 16 8 C -0.56 -15.55 8.75 -34.44 -0.30 -15.85 16 9 H 0.05 1.45 7.69 -52.49 -0.40 1.05 16 10 C 0.01 0.18 5.46 -17.82 -0.10 0.08 16 11 N -0.93 -28.54 13.65 55.43 0.76 -27.78 16 12 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 C 0.09 1.39 1.95 -67.60 -0.13 1.26 16 17 C -0.15 -2.29 5.26 -26.65 -0.14 -2.43 16 18 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16 19 N -0.69 -8.34 6.87 -113.81 -0.78 -9.13 16 20 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 21 C -0.15 -2.07 4.82 -26.65 -0.13 -2.19 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 1.14 5.34 -51.93 -0.28 0.87 16 24 H 0.08 1.83 7.79 -51.93 -0.40 1.42 16 25 H 0.06 0.99 5.46 -51.93 -0.28 0.71 16 26 H 0.03 0.48 5.58 -51.92 -0.29 0.19 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.04 5.27 -51.93 -0.27 0.76 16 29 H 0.04 0.59 7.47 -51.93 -0.39 0.21 16 30 H 0.00 0.00 8.01 -51.93 -0.42 -0.42 16 31 H 0.03 0.79 3.98 -51.93 -0.21 0.58 16 32 H 0.26 8.14 7.22 -40.82 -0.29 7.85 16 33 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 34 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 35 H 0.07 1.18 6.25 -51.93 -0.32 0.85 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.34 3.99 8.86 -39.29 -0.35 3.65 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -29.75 304.97 -8.94 -38.69 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.09 Total: 3.56 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.50 Total: -20.66 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.86 Total: -47.13 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.75 -8.94 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.942 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds