Wall clock time and date at job start Mon Mar 30 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47257 * 2 1 4 4 C 1.46905 * 111.00079 * 70.36237 * 3 2 1 5 5 H 1.08994 * 109.46897 * 157.78364 * 4 3 2 6 6 C 1.53007 * 109.46883 * 37.78925 * 4 3 2 7 7 C 1.52994 * 109.47234 * 277.78697 * 4 3 2 8 8 C 1.50700 * 109.47268 * 299.19440 * 7 4 3 9 9 H 1.07999 * 119.99602 * 0.02562 * 8 7 4 10 10 C 1.37880 * 120.00127 * 179.97438 * 8 7 4 11 11 N 1.31516 * 119.99725 * 359.72448 * 10 8 7 12 12 Si 1.86797 * 120.00044 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46999 * 269.72486 * 12 10 8 14 14 H 1.48503 * 109.47074 * 29.72521 * 12 10 8 15 15 H 1.48494 * 109.47093 * 149.72398 * 12 10 8 16 16 C 1.46894 * 111.00076 * 194.31664 * 3 2 1 17 17 C 1.53114 * 109.52676 * 171.74988 * 16 3 2 18 18 C 1.53045 * 109.27966 * 182.50572 * 17 16 3 19 19 N 1.46848 * 109.57407 * 59.08431 * 18 17 16 20 20 C 1.46847 * 111.19405 * 298.28726 * 19 18 17 21 21 C 1.53043 * 109.52387 * 61.74723 * 20 19 18 22 22 H 1.08995 * 109.47147 * 159.25986 * 1 2 3 23 23 H 1.09002 * 109.47356 * 279.26333 * 1 2 3 24 24 H 1.09002 * 109.46815 * 39.25887 * 1 2 3 25 25 H 1.08990 * 109.47198 * 239.99481 * 2 1 3 26 26 H 1.09008 * 109.46626 * 120.00040 * 2 1 3 27 27 H 1.09000 * 109.46794 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.46666 * 299.99844 * 6 4 3 29 29 H 1.09000 * 109.47168 * 59.99644 * 6 4 3 30 30 H 1.08998 * 109.47035 * 179.19166 * 7 4 3 31 31 H 1.09000 * 109.47065 * 59.19632 * 7 4 3 32 32 H 0.96998 * 120.00124 * 0.27419 * 11 10 8 33 33 H 1.09001 * 109.52747 * 291.87615 * 16 3 2 34 34 H 1.09007 * 109.50253 * 302.38734 * 17 16 3 35 35 H 1.09002 * 109.50496 * 62.49505 * 17 16 3 36 36 H 1.08998 * 109.40667 * 299.06788 * 18 17 16 37 37 H 1.08998 * 109.45622 * 179.12761 * 18 17 16 38 38 H 1.00895 * 110.99866 * 62.38584 * 19 18 17 39 39 H 1.08991 * 109.46951 * 301.72825 * 20 19 18 40 40 H 1.09001 * 109.45042 * 181.75391 * 20 19 18 41 41 H 1.09000 * 109.50407 * 180.87233 * 21 20 19 42 42 H 1.09004 * 109.53259 * 60.77352 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7606 2.0350 1.2917 5 1 2.4457 2.8729 1.4206 6 6 1.9714 1.0254 2.4220 7 6 0.3187 2.5452 1.3258 8 6 0.1166 3.5542 0.2249 9 1 0.9348 3.8061 -0.4335 10 6 -1.1130 4.1551 0.0576 11 7 -2.1111 3.8436 0.8554 12 14 -1.3637 5.4053 -1.3075 13 1 -1.0529 6.7647 -0.7969 14 1 -0.4624 5.0852 -2.4435 15 1 -2.7749 5.3599 -1.7673 16 6 3.4479 1.4383 -0.3391 17 6 3.8742 2.8964 -0.5313 18 6 5.3468 2.9419 -0.9454 19 7 5.5306 2.1896 -2.1931 20 6 5.1730 0.7761 -2.0183 21 6 3.6947 0.6658 -1.6379 22 1 -0.3633 -0.9610 -0.3639 23 1 -0.3634 0.1654 1.0143 24 1 -0.3633 0.7957 -0.6504 25 1 1.8933 -0.5139 -0.8898 26 1 1.8932 -0.5139 0.8901 27 1 1.7787 1.5076 3.3803 28 1 1.2863 0.1875 2.2930 29 1 2.9987 0.6620 2.3976 30 1 0.1221 3.0147 2.2896 31 1 -0.3660 1.7092 1.1827 32 1 -1.9811 3.1941 1.5640 33 1 4.0306 0.9918 0.4666 34 1 3.2638 3.3543 -1.3098 35 1 3.7409 3.4408 0.4036 36 1 5.9578 2.4973 -0.1599 37 1 5.6491 3.9779 -1.0981 38 1 5.0042 2.6053 -2.9468 39 1 5.7848 0.3417 -1.2278 40 1 5.3491 0.2392 -2.9505 41 1 3.4334 -0.3825 -1.4931 42 1 3.0810 1.0872 -2.4341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709975226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:14 Heat of formation + Delta-G solvation = -16.992352 kcal Electronic energy + Delta-G solvation = -18984.509185 eV Core-core repulsion = 16384.384178 eV Total energy + Delta-G solvation = -2600.125007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84890 -38.39756 -35.28395 -33.00555 -32.66952 -31.46818 -29.29536 -28.65930 -25.31709 -24.40826 -23.82950 -22.46468 -21.40397 -20.26568 -18.80222 -17.67395 -16.98112 -15.98975 -15.67149 -15.56935 -15.33153 -15.22175 -14.84069 -14.37191 -14.00357 -13.99048 -13.50751 -13.39538 -13.07698 -12.97058 -12.85718 -12.69777 -12.51627 -12.27280 -12.18940 -12.05628 -11.94572 -11.60602 -11.48603 -11.17741 -10.87971 -10.51838 -10.30046 -9.35248 -8.88295 -8.49354 -6.12139 1.51177 1.60539 1.77309 2.62665 2.98303 3.33352 3.45255 3.77537 3.86774 4.03186 4.17909 4.25841 4.29689 4.35020 4.37779 4.43721 4.48392 4.51252 4.64974 4.69853 4.80983 4.84138 4.91090 4.97269 5.00398 5.06671 5.07437 5.11741 5.22069 5.23907 5.31138 5.38448 5.51211 5.71115 6.06924 6.20650 6.40089 6.43219 6.48476 6.52178 6.83144 7.62543 8.91493 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.008565 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.463150 B = 3268.424952 C = 3918.925421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 N -0.526 5.526 4 C 0.099 3.901 5 H 0.057 0.943 6 C -0.174 4.174 7 C 0.005 3.995 8 C -0.556 4.556 9 H 0.046 0.954 10 C -0.049 4.049 11 N -0.954 5.954 12 Si 1.111 2.889 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.289 1.289 16 C 0.089 3.911 17 C -0.142 4.142 18 C 0.068 3.932 19 N -0.687 5.687 20 C 0.065 3.935 21 C -0.145 4.145 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.061 0.939 30 H -0.029 1.029 31 H 0.025 0.975 32 H 0.251 0.749 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.344 0.656 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.592 -7.842 -4.130 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.250 5.250 4 C -0.009 4.009 5 H 0.075 0.925 6 C -0.233 4.233 7 C -0.032 4.032 8 C -0.595 4.595 9 H 0.064 0.936 10 C -0.244 4.244 11 N -0.594 5.594 12 Si 0.935 3.065 13 H -0.205 1.205 14 H -0.200 1.200 15 H -0.215 1.215 16 C -0.019 4.019 17 C -0.182 4.182 18 C -0.063 4.063 19 N -0.315 5.315 20 C -0.065 4.065 21 C -0.185 4.185 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H -0.011 1.011 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.931 -6.694 -5.100 16.276 hybrid contribution -0.132 -1.108 1.854 2.164 sum 13.800 -7.802 -3.245 16.181 Atomic orbital electron populations 1.21893 0.96292 1.00689 1.00798 1.22246 0.95211 0.89337 1.01235 1.62168 1.15630 1.16369 1.30787 1.21479 0.97391 0.95157 0.86900 0.92527 1.22410 1.01307 1.00366 0.99212 1.19589 0.93638 0.96024 0.93932 1.22192 0.98273 1.23524 1.15517 0.93615 1.27059 0.92990 1.01683 1.02663 1.70888 1.34176 1.34749 1.19566 0.82990 0.75691 0.74218 0.73614 1.20466 1.19961 1.21486 1.21601 0.87860 0.95815 0.96670 1.22288 0.98309 0.96199 1.01404 1.21963 0.92746 0.99213 0.92329 1.60744 1.60684 1.03104 1.07002 1.22040 0.92291 0.89677 1.02537 1.22398 0.98987 1.00552 0.96529 0.91525 0.94170 0.94229 0.89558 0.93687 0.92932 0.91961 0.92018 1.01080 0.95753 0.93937 0.94819 0.93313 0.93015 0.90656 0.89977 0.83878 0.90666 0.89015 0.90418 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.21 71.98 0.59 -4.57 16 2 C 0.05 1.51 4.92 86.30 0.42 1.94 16 3 N -0.53 -19.24 3.82 -845.46 -3.23 -22.47 16 4 C 0.10 4.04 2.08 44.91 0.09 4.13 16 5 H 0.06 2.40 5.75 -2.39 -0.01 2.39 16 6 C -0.17 -5.88 7.98 71.98 0.57 -5.30 16 7 C 0.01 0.27 3.44 29.85 0.10 0.37 16 8 C -0.56 -31.73 8.75 25.60 0.22 -31.51 16 9 H 0.05 2.62 7.69 -2.91 -0.02 2.60 16 10 C -0.05 -2.89 5.46 84.66 0.46 -2.43 16 11 N -0.95 -60.54 13.65 21.45 0.29 -60.25 16 12 Si 1.11 52.91 29.90 68.60 2.05 54.96 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 16 C 0.09 2.63 1.95 44.99 0.09 2.72 16 17 C -0.14 -4.31 5.26 30.65 0.16 -4.15 16 18 C 0.07 1.57 6.55 86.33 0.57 2.14 16 19 N -0.69 -14.79 6.87 -513.99 -3.53 -18.31 16 20 C 0.06 1.27 6.55 86.33 0.57 1.84 16 21 C -0.15 -3.53 4.82 30.65 0.15 -3.38 16 22 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 1.60 5.34 -2.39 -0.01 1.59 16 24 H 0.04 1.78 7.79 -2.39 -0.02 1.77 16 25 H 0.09 2.41 5.46 -2.39 -0.01 2.40 16 26 H 0.05 1.34 5.58 -2.38 -0.01 1.32 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 2.07 5.27 -2.39 -0.01 2.05 16 29 H 0.06 1.79 7.47 -2.39 -0.02 1.77 16 30 H -0.03 -1.64 8.01 -2.39 -0.02 -1.66 16 31 H 0.02 1.30 3.98 -2.39 -0.01 1.29 16 32 H 0.25 16.15 7.22 -92.71 -0.67 15.48 16 33 H 0.03 0.97 7.44 -2.39 -0.02 0.95 16 34 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.05 1.73 6.25 -2.39 -0.01 1.72 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.34 7.28 8.86 -89.70 -0.79 6.49 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.71 6.18 -2.39 -0.01 1.70 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.46 304.97 -0.12 -65.57 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.30 Total: 18.70 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.00 Total: -38.21 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -6.47 Total: -101.03 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.05 Total: 54.96 kcal Total: -65.46 -0.12 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.582 kcal (2) G-P(sol) polarization free energy of solvation -65.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds