Wall clock time and date at job start Mon Mar 30 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47250 * 2 1 4 4 C 1.46893 * 111.00602 * 188.93049 * 3 2 1 5 5 H 1.08998 * 109.47416 * 184.97032 * 4 3 2 6 6 C 1.53001 * 109.46828 * 304.96858 * 4 3 2 7 7 C 1.53003 * 109.47353 * 64.96624 * 4 3 2 8 8 C 1.50698 * 109.46871 * 65.00543 * 7 4 3 9 9 H 1.08000 * 120.00180 * 359.97438 * 8 7 4 10 10 C 1.37871 * 119.99829 * 180.02562 * 8 7 4 11 11 N 1.31514 * 120.00102 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00116 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46754 * 90.00509 * 12 10 8 14 14 H 1.48497 * 109.47243 * 210.00187 * 12 10 8 15 15 H 1.48496 * 109.47145 * 330.00429 * 12 10 8 16 16 C 1.46904 * 111.00151 * 64.96785 * 3 2 1 17 17 C 1.53123 * 109.52352 * 162.29106 * 16 3 2 18 18 C 1.53038 * 109.27331 * 182.50751 * 17 16 3 19 19 N 1.46847 * 109.57536 * 59.08736 * 18 17 16 20 20 C 1.46850 * 111.19719 * 298.28339 * 19 18 17 21 21 C 1.53043 * 109.52150 * 61.74518 * 20 19 18 22 22 H 1.09001 * 109.47623 * 54.29351 * 1 2 3 23 23 H 1.09007 * 109.47025 * 174.28867 * 1 2 3 24 24 H 1.09000 * 109.47267 * 294.28906 * 1 2 3 25 25 H 1.09000 * 109.47844 * 240.00007 * 2 1 3 26 26 H 1.09004 * 109.47300 * 119.99238 * 2 1 3 27 27 H 1.09003 * 109.47252 * 277.87982 * 6 4 3 28 28 H 1.08996 * 109.47293 * 37.87988 * 6 4 3 29 29 H 1.08998 * 109.47369 * 157.87883 * 6 4 3 30 30 H 1.09000 * 109.46835 * 185.00575 * 7 4 3 31 31 H 1.08994 * 109.46734 * 305.00387 * 7 4 3 32 32 H 0.97005 * 120.00222 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.52498 * 282.42056 * 16 3 2 34 34 H 1.09001 * 109.49847 * 302.38497 * 17 16 3 35 35 H 1.09002 * 109.50167 * 62.50242 * 17 16 3 36 36 H 1.08994 * 109.41090 * 299.07020 * 18 17 16 37 37 H 1.08997 * 109.45350 * 179.12729 * 18 17 16 38 38 H 1.00897 * 111.00228 * 62.38639 * 19 18 17 39 39 H 1.08999 * 109.46323 * 301.73323 * 20 19 18 40 40 H 1.09003 * 109.45587 * 181.75167 * 20 19 18 41 41 H 1.09002 * 109.50424 * 180.88003 * 21 20 19 42 42 H 1.09003 * 109.53282 * 60.77690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4724 1.4298 -0.2129 5 1 3.8216 2.4582 -0.1206 6 6 4.1684 0.5590 0.8350 7 6 3.7993 0.9038 -1.6119 8 6 3.2161 1.8315 -2.6464 9 1 2.6668 2.7084 -2.3370 10 6 3.3829 1.5603 -3.9878 11 7 2.8735 2.3696 -4.8907 12 14 4.3324 0.0432 -4.5231 13 1 3.3976 -1.1023 -4.6621 14 1 4.9908 0.3060 -5.8279 15 1 5.3636 -0.2802 -3.5046 16 6 1.6480 2.0748 1.2426 17 6 2.5180 3.3231 1.4148 18 6 2.1696 4.0026 2.7411 19 7 2.3988 3.0662 3.8488 20 6 1.5387 1.8820 3.7296 21 6 1.8693 1.1382 2.4335 22 1 -0.3634 0.5998 -0.8345 23 1 -0.3633 -1.0226 -0.1023 24 1 -0.3634 0.4227 0.9367 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 4.2751 1.1217 1.7624 28 1 3.5721 -0.3347 1.0189 29 1 5.1539 0.2695 0.4703 30 1 4.8809 0.8534 -1.7375 31 1 3.3726 -0.0916 -1.7346 32 1 2.9912 2.1790 -5.8345 33 1 0.5985 2.3656 1.1980 34 1 3.5695 3.0359 1.4192 35 1 2.3319 4.0127 0.5915 36 1 1.1218 4.3027 2.7301 37 1 2.7982 4.8831 2.8739 38 1 3.3712 2.8028 3.9043 39 1 0.4939 2.1920 3.7139 40 1 1.7092 1.2223 4.5804 41 1 1.2201 0.2679 2.3376 42 1 2.9102 0.8152 2.4540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709975227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:16 Heat of formation + Delta-G solvation = 15.360660 kcal Electronic energy + Delta-G solvation = -19033.222349 eV Core-core repulsion = 16434.500274 eV Total energy + Delta-G solvation = -2598.722075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09156 -36.70348 -33.19510 -31.83001 -31.08519 -30.46553 -27.90382 -27.69258 -23.74052 -23.36567 -22.17752 -21.26569 -20.49666 -18.12652 -16.57697 -16.21193 -15.52033 -15.06190 -14.64127 -14.46700 -14.06113 -13.92824 -13.17798 -12.71540 -12.66009 -12.46793 -12.08603 -12.02094 -11.91503 -11.85652 -11.54944 -11.44691 -11.08807 -10.91310 -10.74275 -10.60222 -10.28345 -10.09883 -9.76605 -9.61794 -9.37203 -9.01370 -8.43262 -8.39211 -7.43955 -5.91395 -3.85304 3.34167 3.42093 3.44041 4.29451 4.50393 4.53697 4.85795 5.00446 5.21405 5.40232 5.41830 5.46356 5.48120 5.48479 5.61202 5.63372 5.74786 5.81310 5.88362 5.88598 5.93985 6.00295 6.03892 6.13323 6.16355 6.33461 6.36845 6.43710 6.56867 6.65974 6.68343 6.81472 7.03058 7.14794 7.33310 7.36042 7.82863 7.86380 7.98914 8.71963 9.21281 9.71771 11.22642 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.007071 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.834895 B = 3959.049380 C = 4116.677574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.501 5.501 4 C 0.088 3.912 5 H 0.084 0.916 6 C -0.194 4.194 7 C -0.007 4.007 8 C -0.489 4.489 9 H 0.078 0.922 10 C 0.062 3.938 11 N -0.908 5.908 12 Si 0.871 3.129 13 H -0.280 1.280 14 H -0.290 1.290 15 H -0.269 1.269 16 C 0.090 3.910 17 C -0.160 4.160 18 C 0.058 3.942 19 N -0.688 5.688 20 C 0.061 3.939 21 C -0.211 4.211 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.337 0.663 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -2.645 15.729 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.223 5.223 4 C -0.020 4.020 5 H 0.101 0.899 6 C -0.252 4.252 7 C -0.045 4.045 8 C -0.527 4.527 9 H 0.097 0.903 10 C -0.138 4.138 11 N -0.548 5.548 12 Si 0.700 3.300 13 H -0.206 1.206 14 H -0.216 1.216 15 H -0.194 1.194 16 C -0.019 4.019 17 C -0.199 4.199 18 C -0.073 4.073 19 N -0.316 5.316 20 C -0.069 4.069 21 C -0.251 4.251 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.080 -2.032 15.556 15.826 hybrid contribution 1.253 -1.831 -0.625 2.305 sum -0.826 -3.863 14.931 15.445 Atomic orbital electron populations 1.21771 0.95866 1.00840 1.01850 1.22170 0.95164 0.90333 1.00626 1.62381 1.13554 1.14665 1.31675 1.21822 0.85534 0.99224 0.95397 0.89854 1.22918 1.01549 1.00992 0.99756 1.19733 0.95927 0.96661 0.92153 1.21044 1.32903 1.09653 0.89147 0.90343 1.25007 0.95706 0.96139 0.96922 1.69911 1.46509 1.37630 1.00748 0.86918 0.80835 0.84325 0.77957 1.20610 1.21613 1.19390 1.21679 0.99325 0.93263 0.87599 1.22556 1.00315 0.97997 0.99027 1.22025 1.01924 0.95130 0.88172 1.60720 1.10413 1.15768 1.44682 1.21950 0.97776 0.91059 0.96129 1.23490 1.03728 1.00530 0.97364 0.91457 0.93250 0.93616 0.90113 0.95126 0.93341 0.92481 0.92748 0.96611 0.97050 0.93090 0.90806 0.91152 0.90235 0.91112 0.90852 0.84620 0.91324 0.91461 0.91182 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.49 37.15 0.35 -1.84 16 2 C 0.04 0.75 4.32 -3.83 -0.02 0.74 16 3 N -0.50 -9.09 4.38 -218.57 -0.96 -10.05 16 4 C 0.09 1.69 1.74 -67.71 -0.12 1.57 16 5 H 0.08 1.65 5.62 -51.93 -0.29 1.36 16 6 C -0.19 -3.04 7.45 37.16 0.28 -2.76 16 7 C -0.01 -0.17 3.36 -27.88 -0.09 -0.27 16 8 C -0.49 -13.80 9.39 -34.44 -0.32 -14.12 16 9 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 10 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 11 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 12 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 16 C 0.09 1.34 1.95 -67.58 -0.13 1.21 16 17 C -0.16 -2.25 4.36 -26.65 -0.12 -2.37 16 18 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 19 N -0.69 -7.77 6.87 -113.81 -0.78 -8.55 16 20 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 21 C -0.21 -2.63 3.92 -26.65 -0.10 -2.74 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.04 0.62 6.47 -51.93 -0.34 0.28 16 25 H 0.08 1.56 5.98 -51.93 -0.31 1.25 16 26 H 0.03 0.47 4.25 -51.93 -0.22 0.25 16 27 H 0.05 0.67 5.45 -51.93 -0.28 0.39 16 28 H 0.06 0.87 5.14 -51.93 -0.27 0.60 16 29 H 0.05 0.86 7.87 -51.93 -0.41 0.45 16 30 H 0.02 0.38 7.08 -51.93 -0.37 0.01 16 31 H 0.01 0.27 5.57 -51.93 -0.29 -0.02 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.14 7.52 -51.93 -0.39 0.75 16 34 H 0.07 1.02 5.10 -51.93 -0.26 0.76 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.34 3.58 8.86 -39.29 -0.35 3.23 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.88 5.58 -51.93 -0.29 0.59 16 42 H 0.08 1.05 3.93 -51.93 -0.20 0.85 16 LS Contribution 295.69 15.07 4.46 4.46 Total: -1.00 -29.93 295.69 -8.42 -38.35 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.82 Total: 3.64 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.42 Total: -17.57 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.97 Total: -46.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.93 -8.42 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.707 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds