Wall clock time and date at job start Mon Mar 30 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47250 * 2 1 4 4 C 1.46893 * 111.00602 * 188.93049 * 3 2 1 5 5 H 1.08998 * 109.47416 * 184.97032 * 4 3 2 6 6 C 1.53001 * 109.46828 * 304.96858 * 4 3 2 7 7 C 1.53003 * 109.47353 * 64.96624 * 4 3 2 8 8 C 1.50698 * 109.46871 * 65.00543 * 7 4 3 9 9 H 1.08000 * 120.00180 * 359.97438 * 8 7 4 10 10 C 1.37871 * 119.99829 * 180.02562 * 8 7 4 11 11 N 1.31514 * 120.00102 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00116 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46754 * 90.00509 * 12 10 8 14 14 H 1.48497 * 109.47243 * 210.00187 * 12 10 8 15 15 H 1.48496 * 109.47145 * 330.00429 * 12 10 8 16 16 C 1.46904 * 111.00151 * 64.96785 * 3 2 1 17 17 C 1.53123 * 109.52352 * 162.29106 * 16 3 2 18 18 C 1.53038 * 109.27331 * 182.50751 * 17 16 3 19 19 N 1.46847 * 109.57536 * 59.08736 * 18 17 16 20 20 C 1.46850 * 111.19719 * 298.28339 * 19 18 17 21 21 C 1.53043 * 109.52150 * 61.74518 * 20 19 18 22 22 H 1.09001 * 109.47623 * 54.29351 * 1 2 3 23 23 H 1.09007 * 109.47025 * 174.28867 * 1 2 3 24 24 H 1.09000 * 109.47267 * 294.28906 * 1 2 3 25 25 H 1.09000 * 109.47844 * 240.00007 * 2 1 3 26 26 H 1.09004 * 109.47300 * 119.99238 * 2 1 3 27 27 H 1.09003 * 109.47252 * 277.87982 * 6 4 3 28 28 H 1.08996 * 109.47293 * 37.87988 * 6 4 3 29 29 H 1.08998 * 109.47369 * 157.87883 * 6 4 3 30 30 H 1.09000 * 109.46835 * 185.00575 * 7 4 3 31 31 H 1.08994 * 109.46734 * 305.00387 * 7 4 3 32 32 H 0.97005 * 120.00222 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.52498 * 282.42056 * 16 3 2 34 34 H 1.09001 * 109.49847 * 302.38497 * 17 16 3 35 35 H 1.09002 * 109.50167 * 62.50242 * 17 16 3 36 36 H 1.08994 * 109.41090 * 299.07020 * 18 17 16 37 37 H 1.08997 * 109.45350 * 179.12729 * 18 17 16 38 38 H 1.00897 * 111.00228 * 62.38639 * 19 18 17 39 39 H 1.08999 * 109.46323 * 301.73323 * 20 19 18 40 40 H 1.09003 * 109.45587 * 181.75167 * 20 19 18 41 41 H 1.09002 * 109.50424 * 180.88003 * 21 20 19 42 42 H 1.09003 * 109.53282 * 60.77690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4724 1.4298 -0.2129 5 1 3.8216 2.4582 -0.1206 6 6 4.1684 0.5590 0.8350 7 6 3.7993 0.9038 -1.6119 8 6 3.2161 1.8315 -2.6464 9 1 2.6668 2.7084 -2.3370 10 6 3.3829 1.5603 -3.9878 11 7 2.8735 2.3696 -4.8907 12 14 4.3324 0.0432 -4.5231 13 1 3.3976 -1.1023 -4.6621 14 1 4.9908 0.3060 -5.8279 15 1 5.3636 -0.2802 -3.5046 16 6 1.6480 2.0748 1.2426 17 6 2.5180 3.3231 1.4148 18 6 2.1696 4.0026 2.7411 19 7 2.3988 3.0662 3.8488 20 6 1.5387 1.8820 3.7296 21 6 1.8693 1.1382 2.4335 22 1 -0.3634 0.5998 -0.8345 23 1 -0.3633 -1.0226 -0.1023 24 1 -0.3634 0.4227 0.9367 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 4.2751 1.1217 1.7624 28 1 3.5721 -0.3347 1.0189 29 1 5.1539 0.2695 0.4703 30 1 4.8809 0.8534 -1.7375 31 1 3.3726 -0.0916 -1.7346 32 1 2.9912 2.1790 -5.8345 33 1 0.5985 2.3656 1.1980 34 1 3.5695 3.0359 1.4192 35 1 2.3319 4.0127 0.5915 36 1 1.1218 4.3027 2.7301 37 1 2.7982 4.8831 2.8739 38 1 3.3712 2.8028 3.9043 39 1 0.4939 2.1920 3.7139 40 1 1.7092 1.2223 4.5804 41 1 1.2201 0.2679 2.3376 42 1 2.9102 0.8152 2.4540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709975227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:16 Heat of formation + Delta-G solvation = -6.559686 kcal Electronic energy + Delta-G solvation = -19034.172887 eV Core-core repulsion = 16434.500274 eV Total energy + Delta-G solvation = -2599.672613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32049 -37.88505 -35.09591 -33.52240 -32.33245 -31.52771 -29.69785 -28.94909 -25.12595 -24.66780 -23.62731 -22.54181 -21.69593 -19.52897 -18.78282 -17.41360 -16.88186 -16.26192 -16.09130 -15.75215 -15.50371 -15.15622 -14.68265 -14.35535 -14.00326 -13.76597 -13.60813 -13.50138 -13.14249 -12.97796 -12.81756 -12.76775 -12.61454 -12.43746 -12.05712 -11.86265 -11.82252 -11.65355 -11.41649 -11.17531 -10.97509 -10.86750 -10.65793 -9.36213 -8.74688 -8.18694 -6.17274 1.34194 1.35767 1.46535 2.39853 3.07464 3.22305 3.46926 3.77347 3.93533 4.10283 4.18698 4.26322 4.30816 4.35032 4.44562 4.50201 4.53635 4.61243 4.67794 4.74184 4.81355 4.85659 4.95370 5.00587 5.04900 5.09426 5.12348 5.15115 5.21439 5.25347 5.30965 5.43563 5.48452 5.60310 5.75064 6.09468 6.39629 6.48627 6.53726 6.59848 6.91021 7.43283 8.98861 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.007071 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.834895 B = 3959.049380 C = 4116.677574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.094 3.906 5 H 0.069 0.931 6 C -0.182 4.182 7 C -0.005 4.005 8 C -0.487 4.487 9 H 0.033 0.967 10 C -0.003 4.003 11 N -0.958 5.958 12 Si 0.942 3.058 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.248 1.248 16 C 0.092 3.908 17 C -0.154 4.154 18 C 0.067 3.933 19 N -0.685 5.685 20 C 0.065 3.935 21 C -0.199 4.199 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.344 0.656 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -4.522 18.197 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 N -0.256 5.256 4 C -0.014 4.014 5 H 0.087 0.913 6 C -0.240 4.240 7 C -0.043 4.043 8 C -0.525 4.525 9 H 0.052 0.948 10 C -0.198 4.198 11 N -0.601 5.601 12 Si 0.767 3.233 13 H -0.198 1.198 14 H -0.214 1.214 15 H -0.172 1.172 16 C -0.016 4.016 17 C -0.194 4.194 18 C -0.064 4.064 19 N -0.314 5.314 20 C -0.065 4.065 21 C -0.239 4.239 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.162 0.838 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.308 -3.915 18.059 18.525 hybrid contribution 0.940 -1.143 -1.387 2.028 sum -0.368 -5.058 16.672 17.426 Atomic orbital electron populations 1.21714 0.94732 1.01706 1.01498 1.22161 0.96097 0.89643 1.00292 1.62255 1.13061 1.15863 1.34383 1.21573 0.86851 0.98958 0.94067 0.91313 1.22770 1.01115 1.00749 0.99360 1.19687 0.95360 0.95675 0.93536 1.21280 1.31795 1.08934 0.90539 0.94821 1.25936 0.97080 0.99715 0.97054 1.70085 1.48734 1.40134 1.01150 0.85781 0.79764 0.79963 0.77810 1.19803 1.21449 1.17191 1.21662 0.98738 0.93776 0.87464 1.22499 1.00027 0.97397 0.99466 1.21943 1.02078 0.95438 0.86900 1.60727 1.11028 1.15841 1.43760 1.21971 0.97705 0.90984 0.95856 1.23361 1.03848 1.00011 0.96682 0.94405 0.91197 0.91891 0.92965 0.92659 0.91039 0.91586 0.92578 0.96496 0.96706 0.93099 0.91769 0.91398 0.93250 0.91209 0.89817 0.83840 0.91383 0.89492 0.90745 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.49 71.98 0.68 -3.36 16 2 C 0.05 1.48 4.32 86.30 0.37 1.85 16 3 N -0.53 -19.32 4.38 -845.44 -3.71 -23.02 16 4 C 0.09 3.54 1.74 44.92 0.08 3.62 16 5 H 0.07 2.77 5.62 -2.39 -0.01 2.76 16 6 C -0.18 -5.21 7.45 71.98 0.54 -4.68 16 7 C -0.01 -0.24 3.36 29.85 0.10 -0.14 16 8 C -0.49 -28.42 9.39 25.60 0.24 -28.18 16 9 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 10 C 0.00 -0.19 5.47 84.65 0.46 0.28 16 11 N -0.96 -61.99 13.96 21.44 0.30 -61.69 16 12 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 16 C 0.09 2.65 1.95 45.00 0.09 2.74 16 17 C -0.15 -4.32 4.36 30.65 0.13 -4.18 16 18 C 0.07 1.47 6.55 86.33 0.57 2.03 16 19 N -0.69 -13.45 6.87 -513.99 -3.53 -16.97 16 20 C 0.07 1.22 6.55 86.33 0.57 1.78 16 21 C -0.20 -4.37 3.92 30.65 0.12 -4.25 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 1.59 6.47 -2.39 -0.02 1.58 16 25 H 0.05 1.98 5.98 -2.39 -0.01 1.97 16 26 H 0.06 1.52 4.25 -2.38 -0.01 1.51 16 27 H 0.07 1.73 5.45 -2.39 -0.01 1.72 16 28 H 0.07 1.78 5.14 -2.39 -0.01 1.77 16 29 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 30 H 0.02 0.78 7.08 -2.39 -0.02 0.77 16 31 H 0.01 0.69 5.57 -2.39 -0.01 0.68 16 32 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 33 H 0.06 1.97 7.52 -2.39 -0.02 1.95 16 34 H 0.07 1.91 5.10 -2.39 -0.01 1.90 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.34 6.12 8.86 -89.70 -0.79 5.33 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.60 5.58 -2.39 -0.01 1.59 16 42 H 0.08 1.83 3.93 -2.39 -0.01 1.82 16 Total: -1.00 -66.76 295.69 -0.94 -67.71 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.16 Total: 19.02 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 3.95 Total: -32.48 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -6.94 Total: -101.69 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -66.76 -0.94 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds