Wall clock time and date at job start Mon Mar 30 2020 03:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47100 * 2 1 4 4 C 1.47962 * 111.00067 * 64.92159 * 3 2 1 5 5 C 1.53934 * 86.18058 * 137.58463 * 4 3 2 6 6 C 1.47963 * 111.00090 * 164.27844 * 3 2 1 7 7 H 1.08998 * 113.75972 * 336.74059 * 6 3 2 8 8 C 1.53001 * 113.75496 * 108.09803 * 6 3 2 9 9 N 1.46898 * 109.47208 * 301.06594 * 8 6 3 10 10 C 1.46901 * 110.99637 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47340 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47087 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47352 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00482 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00459 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47054 * 59.99553 * 18 16 14 20 20 H 1.48493 * 109.47314 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46823 * 300.00099 * 18 16 14 22 22 H 1.08996 * 109.46976 * 174.85812 * 1 2 3 23 23 H 1.09003 * 109.47321 * 294.85757 * 1 2 3 24 24 H 1.09000 * 109.46741 * 54.85274 * 1 2 3 25 25 H 1.08999 * 109.47235 * 239.99654 * 2 1 3 26 26 H 1.08997 * 109.46750 * 119.99608 * 2 1 3 27 27 H 1.08997 * 113.75853 * 23.26587 * 4 3 2 28 28 H 1.09002 * 113.75820 * 251.89818 * 4 3 2 29 29 H 1.08998 * 113.73415 * 90.63901 * 5 4 3 30 30 H 1.09008 * 113.73039 * 221.92267 * 5 4 3 31 31 H 1.09000 * 109.47443 * 61.06912 * 8 6 3 32 32 H 1.08998 * 109.46763 * 181.06491 * 8 6 3 33 33 H 1.00900 * 110.99867 * 56.05442 * 9 8 6 34 34 H 1.09006 * 109.47370 * 299.99519 * 10 9 8 35 35 H 1.08999 * 109.47795 * 60.00159 * 10 9 8 36 36 H 1.09003 * 109.47247 * 299.99925 * 11 10 9 37 37 H 1.09000 * 109.47479 * 59.99849 * 11 10 9 38 38 H 1.08997 * 109.46990 * 299.99411 * 12 11 10 39 39 H 1.09002 * 109.47254 * 59.99981 * 12 11 10 40 40 H 1.08998 * 109.47219 * 300.00201 * 13 12 11 41 41 H 1.09002 * 109.46855 * 60.00023 * 13 12 11 42 42 H 0.96996 * 119.99498 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6444 2.0801 1.2511 5 6 3.0703 2.6598 1.2355 6 6 3.4501 1.4417 0.3743 7 1 3.7868 0.5820 0.9536 8 6 4.3798 1.7780 -0.7934 9 7 4.2237 0.7694 -1.8498 10 6 5.1037 1.0604 -2.9895 11 6 4.9128 -0.0088 -4.0672 12 6 5.8298 0.2938 -5.2540 13 6 5.6394 -0.7757 -6.3313 14 6 6.5421 -0.4773 -7.5006 15 1 7.1875 0.3884 -7.4774 16 6 6.5443 -1.3094 -8.5999 17 7 5.7587 -2.3639 -8.6280 18 14 7.6638 -0.9399 -10.0489 19 1 9.0777 -0.9415 -9.5951 20 1 7.4780 -1.9772 -11.0951 21 1 7.3251 0.3932 -10.6087 22 1 -0.3633 -1.0235 -0.0921 23 1 -0.3634 0.4320 0.9325 24 1 -0.3633 0.5916 -0.8403 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4531 1.4072 2.0869 28 1 0.8642 2.8298 1.1199 29 1 3.1514 3.6112 0.7098 30 1 3.5499 2.6716 2.2143 31 1 4.1251 2.7612 -1.1891 32 1 5.4128 1.7829 -0.4454 33 1 3.2611 0.7003 -2.1443 34 1 4.8543 2.0386 -3.4007 35 1 6.1416 1.0600 -2.6567 36 1 5.1619 -0.9873 -3.6564 37 1 3.8749 -0.0080 -4.4001 38 1 5.5812 1.2723 -5.6650 39 1 6.8677 0.2927 -4.9208 40 1 5.8882 -1.7540 -5.9201 41 1 4.6016 -0.7750 -6.6646 42 1 5.7605 -2.9495 -9.4012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712562912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:42 Heat of formation + Delta-G solvation = 4.907337 kcal Electronic energy + Delta-G solvation = -16908.331907 eV Core-core repulsion = 14309.156541 eV Total energy + Delta-G solvation = -2599.175365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32301 -36.42858 -34.07369 -32.95088 -32.02051 -29.17806 -27.45209 -26.84115 -24.22246 -22.81221 -21.88552 -21.30955 -20.00169 -19.65922 -16.66719 -16.21550 -15.91440 -15.37393 -15.04357 -14.48398 -14.32041 -14.17924 -13.78197 -13.09924 -12.86271 -12.50752 -12.32597 -12.08792 -11.98534 -11.66950 -11.57491 -11.44737 -11.09192 -10.93831 -10.79228 -10.69868 -10.48067 -10.41406 -10.36424 -9.56892 -9.21472 -9.03559 -8.92977 -8.29192 -8.25823 -5.93803 -3.95964 3.36882 3.40840 3.43588 3.60762 4.12621 4.36027 4.50890 4.67406 4.84508 4.94942 5.02554 5.07354 5.15702 5.31530 5.40860 5.41449 5.43920 5.52455 5.55149 5.59860 5.67457 5.70915 5.85216 5.91408 5.99389 5.99963 6.22938 6.23843 6.33496 6.58526 6.86871 6.89521 7.03189 7.13367 7.30950 7.56514 7.75474 7.92270 8.07736 8.50537 9.11441 9.67586 11.17582 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044891 B = 0.003223 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.588701 B = 8684.304570 C = 9163.099569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.017 3.983 3 N -0.477 5.477 4 C 0.002 3.998 5 C -0.143 4.143 6 C 0.036 3.964 7 H 0.083 0.917 8 C 0.078 3.922 9 N -0.690 5.690 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.345 0.655 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 8.254 21.354 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 N -0.201 5.201 4 C -0.127 4.127 5 C -0.182 4.182 6 C -0.074 4.074 7 H 0.101 0.899 8 C -0.052 4.052 9 N -0.322 5.322 10 C -0.069 4.069 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.904 7.888 20.886 23.684 hybrid contribution 0.316 0.376 -0.511 0.708 sum -7.588 8.263 20.375 23.260 Atomic orbital electron populations 1.21765 0.94997 1.01916 1.02029 1.22613 0.96042 0.90710 1.01766 1.68523 1.04838 1.13937 1.32757 1.23779 0.97897 0.98552 0.92495 1.23430 0.95999 0.98676 1.00062 1.23537 0.90199 0.97875 0.95778 0.89915 1.21793 0.98346 0.93527 0.91495 1.60499 1.12090 1.48118 1.11470 1.22059 0.96976 0.97424 0.90450 1.21625 1.00351 0.98292 0.95004 1.21588 0.97517 1.00404 0.95185 1.19088 0.96907 0.93399 0.92190 1.21266 1.22956 1.10089 1.01548 0.92832 1.25035 0.95800 0.95171 0.98539 1.69965 1.38727 1.14706 1.30223 0.86669 0.81236 0.77903 0.82243 1.20268 1.21309 1.20290 0.92173 0.93161 0.91803 0.89702 0.94440 0.91492 0.89589 0.89140 0.91040 0.94861 0.90922 0.83693 0.95673 0.91462 0.91789 0.92825 0.93696 0.93487 0.96634 0.96743 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.89 16 2 C 0.02 0.17 5.52 -3.82 -0.02 0.14 16 3 N -0.48 -4.73 5.59 -230.70 -1.29 -6.02 16 4 C 0.00 0.01 6.92 -2.77 -0.02 -0.01 16 5 C -0.14 -1.10 7.84 -25.80 -0.20 -1.30 16 6 C 0.04 0.34 3.57 -66.65 -0.24 0.10 16 7 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 8 C 0.08 0.88 5.84 -3.82 -0.02 0.85 16 9 N -0.69 -9.28 6.50 -113.78 -0.74 -10.02 16 10 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 11 C -0.11 -2.06 5.47 -26.73 -0.15 -2.21 16 12 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.38 7.50 -51.93 -0.39 -0.01 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.93 7.49 -51.93 -0.39 0.54 16 26 H 0.04 0.35 7.68 -51.93 -0.40 -0.05 16 27 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.03 0.38 7.91 -51.93 -0.41 -0.03 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.34 4.71 7.48 -39.29 -0.29 4.42 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -30.54 335.03 -10.40 -40.94 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.14 Total: -1.62 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.99 Total: -18.50 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -1.29 Total: -43.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.54 -10.40 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712562912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.845 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds