Wall clock time and date at job start Mon Mar 30 2020 03:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47100 * 2 1 4 4 C 1.47962 * 111.00067 * 64.92159 * 3 2 1 5 5 C 1.53934 * 86.18058 * 137.58463 * 4 3 2 6 6 C 1.47963 * 111.00090 * 164.27844 * 3 2 1 7 7 H 1.08998 * 113.75972 * 336.74059 * 6 3 2 8 8 C 1.53001 * 113.75496 * 108.09803 * 6 3 2 9 9 N 1.46898 * 109.47208 * 301.06594 * 8 6 3 10 10 C 1.46901 * 110.99637 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47340 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47087 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47352 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00482 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00459 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47054 * 59.99553 * 18 16 14 20 20 H 1.48493 * 109.47314 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46823 * 300.00099 * 18 16 14 22 22 H 1.08996 * 109.46976 * 174.85812 * 1 2 3 23 23 H 1.09003 * 109.47321 * 294.85757 * 1 2 3 24 24 H 1.09000 * 109.46741 * 54.85274 * 1 2 3 25 25 H 1.08999 * 109.47235 * 239.99654 * 2 1 3 26 26 H 1.08997 * 109.46750 * 119.99608 * 2 1 3 27 27 H 1.08997 * 113.75853 * 23.26587 * 4 3 2 28 28 H 1.09002 * 113.75820 * 251.89818 * 4 3 2 29 29 H 1.08998 * 113.73415 * 90.63901 * 5 4 3 30 30 H 1.09008 * 113.73039 * 221.92267 * 5 4 3 31 31 H 1.09000 * 109.47443 * 61.06912 * 8 6 3 32 32 H 1.08998 * 109.46763 * 181.06491 * 8 6 3 33 33 H 1.00900 * 110.99867 * 56.05442 * 9 8 6 34 34 H 1.09006 * 109.47370 * 299.99519 * 10 9 8 35 35 H 1.08999 * 109.47795 * 60.00159 * 10 9 8 36 36 H 1.09003 * 109.47247 * 299.99925 * 11 10 9 37 37 H 1.09000 * 109.47479 * 59.99849 * 11 10 9 38 38 H 1.08997 * 109.46990 * 299.99411 * 12 11 10 39 39 H 1.09002 * 109.47254 * 59.99981 * 12 11 10 40 40 H 1.08998 * 109.47219 * 300.00201 * 13 12 11 41 41 H 1.09002 * 109.46855 * 60.00023 * 13 12 11 42 42 H 0.96996 * 119.99498 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6444 2.0801 1.2511 5 6 3.0703 2.6598 1.2355 6 6 3.4501 1.4417 0.3743 7 1 3.7868 0.5820 0.9536 8 6 4.3798 1.7780 -0.7934 9 7 4.2237 0.7694 -1.8498 10 6 5.1037 1.0604 -2.9895 11 6 4.9128 -0.0088 -4.0672 12 6 5.8298 0.2938 -5.2540 13 6 5.6394 -0.7757 -6.3313 14 6 6.5421 -0.4773 -7.5006 15 1 7.1875 0.3884 -7.4774 16 6 6.5443 -1.3094 -8.5999 17 7 5.7587 -2.3639 -8.6280 18 14 7.6638 -0.9399 -10.0489 19 1 9.0777 -0.9415 -9.5951 20 1 7.4780 -1.9772 -11.0951 21 1 7.3251 0.3932 -10.6087 22 1 -0.3633 -1.0235 -0.0921 23 1 -0.3634 0.4320 0.9325 24 1 -0.3633 0.5916 -0.8403 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4531 1.4072 2.0869 28 1 0.8642 2.8298 1.1199 29 1 3.1514 3.6112 0.7098 30 1 3.5499 2.6716 2.2143 31 1 4.1251 2.7612 -1.1891 32 1 5.4128 1.7829 -0.4454 33 1 3.2611 0.7003 -2.1443 34 1 4.8543 2.0386 -3.4007 35 1 6.1416 1.0600 -2.6567 36 1 5.1619 -0.9873 -3.6564 37 1 3.8749 -0.0080 -4.4001 38 1 5.5812 1.2723 -5.6650 39 1 6.8677 0.2927 -4.9208 40 1 5.8882 -1.7540 -5.9201 41 1 4.6016 -0.7750 -6.6646 42 1 5.7605 -2.9495 -9.4012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712562912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:42 Heat of formation + Delta-G solvation = -15.522987 kcal Electronic energy + Delta-G solvation = -16909.217832 eV Core-core repulsion = 14309.156541 eV Total energy + Delta-G solvation = -2600.061291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03183 -37.72778 -35.83251 -34.14327 -33.49353 -30.69363 -28.24076 -28.11054 -25.89574 -23.75160 -22.85483 -22.62186 -21.72369 -20.41831 -18.44219 -17.48858 -16.84618 -16.54343 -16.41729 -15.94532 -15.53457 -15.12017 -14.71079 -14.56498 -14.14301 -13.83135 -13.60524 -13.25868 -13.16030 -12.87327 -12.77141 -12.69680 -12.39304 -12.23900 -12.18395 -12.06458 -11.93166 -11.49259 -11.43142 -11.37345 -11.30146 -10.94065 -10.55111 -9.72572 -9.33114 -8.19802 -6.31715 1.39294 1.43124 1.51102 2.41041 2.87910 3.12624 3.25197 3.65451 3.93574 4.05920 4.12814 4.19101 4.25760 4.29477 4.42238 4.43618 4.54472 4.65363 4.65918 4.71574 4.79009 4.83907 4.89111 4.92671 4.93844 4.98262 5.14503 5.21704 5.23704 5.27313 5.31520 5.34620 5.53438 5.54510 5.77350 5.86375 6.11516 6.16818 6.25568 6.47717 6.85610 7.37596 8.92045 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044891 B = 0.003223 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.588701 B = 8684.304570 C = 9163.099569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 N -0.495 5.495 4 C 0.004 3.996 5 C -0.133 4.133 6 C 0.033 3.967 7 H 0.082 0.918 8 C 0.079 3.921 9 N -0.694 5.694 10 C 0.071 3.929 11 C -0.104 4.104 12 C -0.096 4.096 13 C 0.023 3.977 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.342 0.658 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.052 0.948 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 9.572 22.179 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 N -0.219 5.219 4 C -0.124 4.124 5 C -0.171 4.171 6 C -0.076 4.076 7 H 0.099 0.901 8 C -0.050 4.050 9 N -0.326 5.326 10 C -0.058 4.058 11 C -0.142 4.142 12 C -0.135 4.135 13 C -0.014 4.014 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.356 9.221 21.733 24.728 hybrid contribution 0.105 -0.065 -0.745 0.755 sum -7.251 9.156 20.988 24.019 Atomic orbital electron populations 1.21722 0.94166 1.02184 1.02133 1.22569 0.96725 0.90717 1.01007 1.68517 1.05102 1.14056 1.34224 1.23832 0.98227 0.98519 0.91840 1.23379 0.95667 0.97623 1.00416 1.23522 0.89784 0.98927 0.95413 0.90052 1.21862 0.99256 0.92703 0.91219 1.60474 1.11666 1.49213 1.11217 1.21845 0.97698 0.96119 0.90125 1.21451 0.99098 0.99002 0.94675 1.21397 0.98702 0.98548 0.94813 1.19017 0.94948 0.93954 0.93479 1.21726 1.23565 1.10550 1.02631 0.92135 1.26044 0.97388 0.94777 1.01877 1.70107 1.40325 1.15757 1.31344 0.85467 0.79178 0.78136 0.78066 1.19048 1.20728 1.19091 0.91646 0.92063 0.92816 0.91589 0.94052 0.90464 0.89146 0.89180 0.89313 0.95030 0.90313 0.83948 0.95344 0.90885 0.92683 0.93310 0.93196 0.92926 0.99257 0.99345 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.81 71.98 0.71 -1.60 16 2 C 0.02 0.34 5.52 86.30 0.48 0.82 16 3 N -0.50 -9.24 5.59 -883.79 -4.94 -14.19 16 4 C 0.00 0.06 6.92 86.41 0.60 0.66 16 5 C -0.13 -1.73 7.84 31.24 0.24 -1.49 16 6 C 0.03 0.59 3.57 45.02 0.16 0.75 16 7 H 0.08 1.47 7.70 -2.39 -0.02 1.45 16 8 C 0.08 1.66 5.84 86.30 0.50 2.16 16 9 N -0.69 -18.12 6.50 -513.88 -3.34 -21.46 16 10 C 0.07 2.07 5.69 86.30 0.49 2.56 16 11 C -0.10 -3.76 5.47 30.59 0.17 -3.59 16 12 C -0.10 -4.15 5.15 30.59 0.16 -3.99 16 13 C 0.02 1.28 4.97 29.85 0.15 1.43 16 14 C -0.55 -32.36 9.11 25.60 0.23 -32.12 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 18 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.83 7.50 -2.39 -0.02 0.81 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.46 7.49 -2.39 -0.02 1.44 16 26 H 0.04 0.72 7.68 -2.39 -0.02 0.70 16 27 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.20 7.94 -2.39 -0.02 1.19 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.03 0.68 7.91 -2.39 -0.02 0.66 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.34 9.26 7.48 -89.69 -0.67 8.59 16 34 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -65.36 335.03 -1.35 -66.70 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.28 Total: 14.22 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 4.35 Total: -34.15 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -8.00 Total: -94.08 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.36 -1.35 -66.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712562912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.181 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds