Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46889 * 109.47278 * 2 1 4 4 C 1.47482 * 111.00090 * 294.26882 * 3 2 1 5 5 C 1.53514 * 87.93564 * 221.29643 * 4 3 2 6 6 C 1.47477 * 111.00230 * 198.30063 * 3 2 1 7 7 H 1.09007 * 113.47518 * 23.93518 * 6 3 2 8 8 C 1.53005 * 113.47680 * 253.53318 * 6 3 2 9 9 N 1.46897 * 109.47383 * 54.99379 * 8 6 3 10 10 C 1.46895 * 110.99930 * 180.02562 * 9 8 6 11 11 C 1.53008 * 109.46930 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46984 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46816 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46796 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99733 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47053 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46798 * 120.00314 * 18 16 14 21 21 H 1.48501 * 109.46976 * 239.99727 * 18 16 14 22 22 H 1.09007 * 109.47558 * 185.07696 * 1 2 3 23 23 H 1.08997 * 109.47256 * 305.07868 * 1 2 3 24 24 H 1.09000 * 109.46882 * 65.08105 * 1 2 3 25 25 H 1.09007 * 109.47070 * 239.99672 * 2 1 3 26 26 H 1.09003 * 109.46704 * 120.00239 * 2 1 3 27 27 H 1.08994 * 113.47459 * 336.06656 * 4 3 2 28 28 H 1.09003 * 113.47231 * 106.52937 * 4 3 2 29 29 H 1.08994 * 114.16919 * 139.66833 * 5 4 3 30 30 H 1.08996 * 114.17399 * 272.38286 * 5 4 3 31 31 H 1.09002 * 109.47530 * 174.99975 * 8 6 3 32 32 H 1.09003 * 109.46822 * 294.99584 * 8 6 3 33 33 H 1.00900 * 110.99726 * 303.95873 * 9 8 6 34 34 H 1.08999 * 109.47279 * 299.99582 * 10 9 8 35 35 H 1.08995 * 109.47650 * 60.00142 * 10 9 8 36 36 H 1.08993 * 109.46923 * 300.00286 * 11 10 9 37 37 H 1.09005 * 109.46759 * 59.99704 * 11 10 9 38 38 H 1.08999 * 109.47187 * 300.00114 * 12 11 10 39 39 H 1.08994 * 109.46548 * 60.00409 * 12 11 10 40 40 H 1.08999 * 109.47358 * 300.00037 * 13 12 11 41 41 H 1.08997 * 109.47409 * 60.00341 * 13 12 11 42 42 H 0.96995 * 120.00449 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6623 2.0718 -1.2552 5 6 3.0647 2.6963 -1.2477 6 6 3.4282 1.4474 -0.4323 7 1 3.7317 0.6003 -1.0476 8 6 4.4050 1.7277 0.7115 9 7 4.2163 0.7293 1.7724 10 6 5.1392 0.9679 2.8901 11 6 4.9136 -0.0898 3.9724 12 6 5.8752 0.1583 5.1363 13 6 5.6492 -0.8990 6.2188 14 6 6.5960 -0.6542 7.3654 15 1 7.2898 0.1724 7.3258 16 6 6.5771 -1.4864 8.4647 17 7 5.7326 -2.4933 8.5128 18 14 7.7512 -1.1834 9.8857 19 1 8.5928 0.0033 9.5880 20 1 6.9734 -0.9405 11.1272 21 1 8.6210 -2.3726 10.0713 22 1 -0.3634 -1.0237 0.0909 23 1 -0.3633 0.5906 0.8410 24 1 -0.3633 0.4330 -0.9320 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4944 1.3914 -2.0899 28 1 0.8613 2.8018 -1.1378 29 1 3.5379 2.7423 -2.2284 30 1 3.1347 3.6297 -0.6893 31 1 5.4276 1.6722 0.3381 32 1 4.2184 2.7239 1.1128 33 1 3.2589 0.7166 2.0907 34 1 6.1669 0.9072 2.5320 35 1 4.9573 1.9587 3.3063 36 1 3.8859 -0.0297 4.3305 37 1 5.0957 -1.0805 3.5558 38 1 6.9028 0.0979 4.7778 39 1 5.6934 1.1489 5.5529 40 1 4.6216 -0.8381 6.5773 41 1 5.8307 -1.8899 5.8025 42 1 5.7195 -3.0789 9.2859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712562916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = 7.713723 kcal Electronic energy + Delta-G solvation = -16935.738983 eV Core-core repulsion = 14336.685311 eV Total energy + Delta-G solvation = -2599.053671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53940 -36.42510 -34.06878 -33.00047 -32.02853 -29.15817 -27.54667 -26.78791 -24.17916 -22.79156 -21.87581 -21.30601 -20.02692 -19.73445 -16.66865 -16.22686 -15.91314 -15.36542 -15.03449 -14.48091 -14.33166 -14.18062 -13.75268 -13.09783 -12.85334 -12.51672 -12.33327 -12.13732 -11.96659 -11.64382 -11.57418 -11.47267 -11.10423 -10.96772 -10.87962 -10.58243 -10.48372 -10.37227 -10.33507 -9.57388 -9.22492 -9.10086 -8.93035 -8.29848 -8.25564 -5.94238 -3.96178 3.34276 3.41383 3.45957 3.70614 4.10176 4.33668 4.50827 4.67946 4.83487 4.94588 5.03888 5.05587 5.15253 5.32403 5.40476 5.41236 5.44270 5.52738 5.55342 5.58821 5.67633 5.71593 5.84205 5.90409 5.98106 5.99908 6.20948 6.23191 6.33478 6.58568 6.87481 6.89548 7.03220 7.13534 7.31107 7.57267 7.75881 7.92106 8.07438 8.50467 9.11676 9.67466 11.17205 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.003248 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.639400 B = 8618.642512 C = 9107.526044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.016 3.984 3 N -0.469 5.469 4 C -0.002 4.002 5 C -0.144 4.144 6 C 0.032 3.968 7 H 0.082 0.918 8 C 0.076 3.924 9 N -0.690 5.690 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.345 0.655 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 8.587 -21.208 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 N -0.192 5.192 4 C -0.131 4.131 5 C -0.182 4.182 6 C -0.077 4.077 7 H 0.099 0.901 8 C -0.054 4.054 9 N -0.322 5.322 10 C -0.069 4.069 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.890 8.205 -20.728 23.648 hybrid contribution 0.376 0.329 0.512 0.715 sum -7.515 8.535 -20.216 23.195 Atomic orbital electron populations 1.21767 0.94970 1.01962 1.02032 1.22642 0.96040 0.90573 1.01964 1.68914 1.04816 1.13985 1.31482 1.23660 0.98231 0.98556 0.92650 1.23248 0.96366 0.98146 1.00430 1.23477 0.90624 0.97824 0.95821 0.90051 1.21843 0.98135 0.93674 0.91757 1.60508 1.10089 1.49768 1.11825 1.22058 0.96517 0.97565 0.90785 1.21626 1.00199 0.98401 0.95037 1.21586 0.97273 1.00454 0.95371 1.19098 0.96888 0.93470 0.92203 1.21340 1.19358 1.12661 1.02339 0.92727 1.25041 0.95809 0.95249 0.98499 1.69976 1.36783 1.16827 1.30004 0.86558 0.81017 0.78098 0.82460 1.19767 1.21053 1.21045 0.92132 0.91792 0.93166 0.94312 0.89524 0.91563 0.89923 0.90676 0.88901 0.91027 0.94903 0.83632 0.91491 0.95681 0.92829 0.91800 0.93487 0.93699 0.96731 0.96629 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.82 37.16 0.36 -0.90 16 2 C 0.02 0.16 5.52 -3.83 -0.02 0.14 16 3 N -0.47 -4.67 5.63 -236.51 -1.33 -6.00 16 4 C 0.00 -0.02 6.68 -7.55 -0.05 -0.07 16 5 C -0.14 -1.09 8.00 -26.20 -0.21 -1.30 16 6 C 0.03 0.31 3.37 -71.44 -0.24 0.07 16 7 H 0.08 0.79 7.63 -51.92 -0.40 0.39 16 8 C 0.08 0.85 5.86 -3.82 -0.02 0.83 16 9 N -0.69 -9.30 6.50 -113.78 -0.74 -10.04 16 10 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 11 C -0.11 -2.06 5.48 -26.73 -0.15 -2.21 16 12 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 18 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.38 7.54 -51.93 -0.39 -0.01 16 25 H 0.04 0.36 7.56 -51.93 -0.39 -0.03 16 26 H 0.09 0.96 7.44 -51.93 -0.39 0.57 16 27 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.38 7.88 -51.93 -0.41 -0.03 16 33 H 0.35 4.74 7.26 -39.29 -0.29 4.45 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -30.58 334.35 -10.47 -41.05 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.12 Total: -1.61 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.03 Total: -18.62 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -1.33 Total: -42.97 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.58 -10.47 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712562916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.760 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds