Wall clock time and date at job start Mon Mar 30 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47415 * 2 1 4 4 C 1.50712 * 109.46763 * 119.99351 * 2 1 3 5 5 H 1.07994 * 119.99481 * 120.00226 * 4 2 1 6 6 C 1.37871 * 119.99842 * 300.00098 * 4 2 1 7 7 N 1.31513 * 120.00316 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00361 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47108 * 89.99555 * 8 6 4 10 10 H 1.48496 * 109.47238 * 210.00049 * 8 6 4 11 11 H 1.48509 * 109.46615 * 329.99946 * 8 6 4 12 12 N 1.46897 * 109.47338 * 239.98967 * 2 1 3 13 13 C 1.44569 * 111.00440 * 306.05031 * 12 2 1 14 14 C 1.54200 * 108.84959 * 220.34984 * 13 12 2 15 15 N 1.40011 * 112.08101 * 281.17680 * 14 13 12 16 16 C 1.46908 * 111.00000 * 188.09361 * 15 14 13 17 17 C 1.47914 * 114.06781 * 61.81344 * 15 14 13 18 18 C 1.52997 * 109.63267 * 39.77713 * 17 15 14 19 19 C 1.52995 * 109.63366 * 160.17541 * 17 15 14 20 20 C 1.50802 * 108.66060 * 279.97612 * 17 15 14 21 21 C 1.48066 * 110.99685 * 73.73811 * 12 2 1 22 22 H 1.09003 * 109.46469 * 60.00618 * 1 2 3 23 23 H 1.09005 * 109.47445 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47486 * 300.00903 * 1 2 3 25 25 H 0.96993 * 120.00501 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.57851 * 100.53654 * 13 12 2 27 27 H 1.09001 * 109.67660 * 340.21779 * 13 12 2 28 28 H 1.08999 * 108.95698 * 160.51498 * 14 13 12 29 29 H 1.08992 * 108.96371 * 41.85219 * 14 13 12 30 30 H 1.08998 * 109.47301 * 292.04017 * 16 15 14 31 31 H 1.09001 * 109.46720 * 52.03161 * 16 15 14 32 32 H 1.08997 * 109.47189 * 172.03227 * 16 15 14 33 33 H 1.08994 * 109.46862 * 188.85671 * 18 17 15 34 34 H 1.09000 * 109.46972 * 68.85497 * 18 17 15 35 35 H 1.08995 * 109.47096 * 308.85990 * 18 17 15 36 36 H 1.09001 * 109.47509 * 299.60234 * 19 17 15 37 37 H 1.09001 * 109.47367 * 59.60430 * 19 17 15 38 38 H 1.09003 * 109.46888 * 179.59912 * 19 17 15 39 39 H 1.08997 * 108.95909 * 213.32173 * 20 17 15 40 40 H 1.09001 * 108.95651 * 331.97337 * 20 17 15 41 41 H 1.08998 * 108.88199 * 312.96712 * 21 12 2 42 42 H 1.09002 * 108.88330 * 71.52782 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 2.1378 -0.8586 3.5567 8 14 0.6246 1.2793 2.6540 9 1 -0.8030 0.8729 2.6996 10 1 0.9756 1.9955 3.9066 11 1 0.8470 2.1766 1.4918 12 7 2.0197 -0.6927 -1.1993 13 6 1.4436 -2.0144 -1.3058 14 6 2.5326 -2.9953 -1.7851 15 7 2.7518 -2.9052 -3.1650 16 6 3.6480 -3.9739 -3.6265 17 6 3.2317 -1.5802 -3.6143 18 6 4.2408 -1.0295 -2.6048 19 6 3.8965 -1.7123 -4.9859 20 6 2.0511 -0.6469 -3.7113 21 6 1.8316 0.1417 -2.4079 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 1.9031 -0.5274 4.4376 26 1 0.6243 -1.9988 -2.0245 27 1 1.0695 -2.3313 -0.3323 28 1 2.2254 -4.0122 -1.5410 29 1 3.4635 -2.7735 -1.2634 30 1 4.6474 -3.8092 -3.2239 31 1 3.2719 -4.9373 -3.2823 32 1 3.6895 -3.9681 -4.7157 33 1 4.4736 0.0062 -2.8519 34 1 5.1528 -1.6255 -2.6407 35 1 3.8150 -1.0770 -1.6026 36 1 4.7450 -2.3928 -4.9145 37 1 3.1755 -2.1047 -5.7030 38 1 4.2427 -0.7334 -5.3176 39 1 2.2187 0.0520 -4.5307 40 1 1.1551 -1.2302 -3.9232 41 1 0.8185 0.5438 -2.4048 42 1 2.5395 0.9700 -2.3784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712632231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:09 Heat of formation + Delta-G solvation = 38.977492 kcal Electronic energy + Delta-G solvation = -19365.299507 eV Core-core repulsion = 16767.601534 eV Total energy + Delta-G solvation = -2597.697973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.08629 -36.67842 -33.58857 -32.62330 -30.59699 -28.59706 -27.57699 -26.83293 -25.12993 -24.26167 -23.16881 -21.08304 -18.82286 -17.98043 -16.65307 -16.06924 -15.55950 -15.06139 -14.86783 -14.17092 -13.67063 -13.23238 -13.11561 -13.01381 -12.65516 -12.26617 -12.17291 -11.85549 -11.71043 -11.50463 -11.26350 -11.21365 -10.90126 -10.69458 -10.60715 -10.48387 -10.27592 -10.13818 -10.02758 -9.86806 -9.47247 -9.02947 -8.57482 -7.71596 -7.07412 -6.06158 -4.03861 3.25871 3.36452 3.38592 4.29923 4.39966 4.75496 5.12054 5.19447 5.25652 5.38007 5.54579 5.63704 5.69088 5.75399 5.86309 5.91522 5.94916 6.02286 6.08567 6.12533 6.17360 6.20533 6.23364 6.31030 6.33791 6.46912 6.48687 6.50973 6.68025 6.69834 6.77659 6.91274 7.18655 7.35388 7.55881 7.70520 7.83382 8.02868 8.23764 8.67426 9.02548 9.56628 11.06925 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.007596 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.654419 B = 3685.245488 C = 3970.227049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.182 3.818 3 H 0.037 0.963 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.526 5.526 13 C 0.071 3.929 14 C 0.068 3.932 15 N -0.545 5.545 16 C 0.028 3.972 17 C 0.124 3.876 18 C -0.201 4.201 19 C -0.144 4.144 20 C -0.106 4.106 21 C 0.057 3.943 22 H 0.028 0.972 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.263 0.737 26 H 0.033 0.967 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.135 0.865 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -1.480 -14.543 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.250 5.250 13 C -0.058 4.058 14 C -0.062 4.062 15 N -0.270 5.270 16 C -0.120 4.120 17 C 0.036 3.964 18 C -0.259 4.259 19 C -0.202 4.202 20 C -0.144 4.144 21 C -0.070 4.070 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.152 0.848 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.643 -1.605 -14.491 14.594 hybrid contribution -0.718 1.077 0.479 1.380 sum -0.075 -0.528 -14.012 14.022 Atomic orbital electron populations 1.22833 1.01657 1.00999 0.98785 1.19808 0.88652 0.95274 0.88838 0.94521 1.20944 1.31410 1.13716 0.87735 0.89997 1.24908 0.95884 0.96512 0.95870 1.69875 1.45762 1.40338 0.97850 0.86900 0.80554 0.84028 0.76847 1.20870 1.22537 1.19427 1.60929 1.59362 1.02534 1.02126 1.21825 0.94149 0.89029 1.00818 1.21078 0.99492 0.98683 0.86974 1.59617 1.47940 1.03218 1.16221 1.22365 0.94639 0.94529 1.00471 1.20572 0.93709 0.88271 0.93888 1.23036 0.97740 0.99263 1.05860 1.22101 1.00094 1.01427 0.96570 1.21506 0.98607 0.97612 0.96708 1.22390 0.98848 0.96024 0.89747 0.95319 0.92605 0.93847 0.92688 0.94875 0.89148 0.92138 0.94155 0.95941 0.92251 0.91691 0.93479 0.95227 0.84778 0.92665 0.92511 0.92600 0.91965 0.91524 0.95438 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.18 37.16 0.30 -3.65 16 2 C 0.18 4.17 1.86 -68.86 -0.13 4.04 16 3 H 0.04 0.89 7.09 -51.93 -0.37 0.52 16 4 C -0.50 -13.55 8.15 -34.44 -0.28 -13.83 16 5 H 0.08 2.43 7.85 -52.49 -0.41 2.01 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 8 Si 0.89 21.77 24.37 -169.99 -4.14 17.62 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.53 -10.38 1.77 -227.58 -0.40 -10.79 16 13 C 0.07 1.33 3.88 -4.45 -0.02 1.32 16 14 C 0.07 1.16 4.80 -6.75 -0.03 1.13 16 15 N -0.55 -8.26 4.24 -232.28 -0.98 -9.24 16 16 C 0.03 0.36 8.30 60.07 0.50 0.86 16 17 C 0.12 1.80 0.72 -132.15 -0.09 1.71 16 18 C -0.20 -3.28 6.66 37.16 0.25 -3.04 16 19 C -0.14 -1.73 7.07 37.16 0.26 -1.47 16 20 C -0.11 -1.55 4.80 -27.36 -0.13 -1.68 16 21 C 0.06 0.97 4.56 -2.71 -0.01 0.96 16 22 H 0.03 0.54 6.65 -51.93 -0.35 0.20 16 23 H 0.05 1.17 6.54 -51.93 -0.34 0.83 16 24 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 27 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 28 H 0.06 0.98 7.85 -51.93 -0.41 0.58 16 29 H 0.04 0.78 6.19 -51.93 -0.32 0.45 16 30 H 0.02 0.30 7.69 -51.93 -0.40 -0.10 16 31 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 32 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 33 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.03 0.47 7.82 -51.93 -0.41 0.06 16 35 H 0.13 2.62 3.64 -51.93 -0.19 2.43 16 36 H 0.05 0.63 6.52 -51.93 -0.34 0.30 16 37 H 0.06 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 40 H 0.07 1.01 7.25 -51.93 -0.38 0.64 16 41 H 0.03 0.47 6.43 -51.93 -0.33 0.13 16 42 H 0.06 1.06 7.61 -51.93 -0.40 0.67 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -28.22 288.49 -6.91 -35.13 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.02 Total: 1.02 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 0.52 Total: -11.77 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.61 Total: -46.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.22 -6.91 -35.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712632231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.106 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds