Wall clock time and date at job start Mon Mar 30 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47415 * 2 1 4 4 C 1.50712 * 109.46763 * 119.99351 * 2 1 3 5 5 H 1.07994 * 119.99481 * 120.00226 * 4 2 1 6 6 C 1.37871 * 119.99842 * 300.00098 * 4 2 1 7 7 N 1.31513 * 120.00316 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00361 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47108 * 89.99555 * 8 6 4 10 10 H 1.48496 * 109.47238 * 210.00049 * 8 6 4 11 11 H 1.48509 * 109.46615 * 329.99946 * 8 6 4 12 12 N 1.46897 * 109.47338 * 239.98967 * 2 1 3 13 13 C 1.44569 * 111.00440 * 306.05031 * 12 2 1 14 14 C 1.54200 * 108.84959 * 220.34984 * 13 12 2 15 15 N 1.40011 * 112.08101 * 281.17680 * 14 13 12 16 16 C 1.46908 * 111.00000 * 188.09361 * 15 14 13 17 17 C 1.47914 * 114.06781 * 61.81344 * 15 14 13 18 18 C 1.52997 * 109.63267 * 39.77713 * 17 15 14 19 19 C 1.52995 * 109.63366 * 160.17541 * 17 15 14 20 20 C 1.50802 * 108.66060 * 279.97612 * 17 15 14 21 21 C 1.48066 * 110.99685 * 73.73811 * 12 2 1 22 22 H 1.09003 * 109.46469 * 60.00618 * 1 2 3 23 23 H 1.09005 * 109.47445 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47486 * 300.00903 * 1 2 3 25 25 H 0.96993 * 120.00501 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.57851 * 100.53654 * 13 12 2 27 27 H 1.09001 * 109.67660 * 340.21779 * 13 12 2 28 28 H 1.08999 * 108.95698 * 160.51498 * 14 13 12 29 29 H 1.08992 * 108.96371 * 41.85219 * 14 13 12 30 30 H 1.08998 * 109.47301 * 292.04017 * 16 15 14 31 31 H 1.09001 * 109.46720 * 52.03161 * 16 15 14 32 32 H 1.08997 * 109.47189 * 172.03227 * 16 15 14 33 33 H 1.08994 * 109.46862 * 188.85671 * 18 17 15 34 34 H 1.09000 * 109.46972 * 68.85497 * 18 17 15 35 35 H 1.08995 * 109.47096 * 308.85990 * 18 17 15 36 36 H 1.09001 * 109.47509 * 299.60234 * 19 17 15 37 37 H 1.09001 * 109.47367 * 59.60430 * 19 17 15 38 38 H 1.09003 * 109.46888 * 179.59912 * 19 17 15 39 39 H 1.08997 * 108.95909 * 213.32173 * 20 17 15 40 40 H 1.09001 * 108.95651 * 331.97337 * 20 17 15 41 41 H 1.08998 * 108.88199 * 312.96712 * 21 12 2 42 42 H 1.09002 * 108.88330 * 71.52782 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 2.1378 -0.8586 3.5567 8 14 0.6246 1.2793 2.6540 9 1 -0.8030 0.8729 2.6996 10 1 0.9756 1.9955 3.9066 11 1 0.8470 2.1766 1.4918 12 7 2.0197 -0.6927 -1.1993 13 6 1.4436 -2.0144 -1.3058 14 6 2.5326 -2.9953 -1.7851 15 7 2.7518 -2.9052 -3.1650 16 6 3.6480 -3.9739 -3.6265 17 6 3.2317 -1.5802 -3.6143 18 6 4.2408 -1.0295 -2.6048 19 6 3.8965 -1.7123 -4.9859 20 6 2.0511 -0.6469 -3.7113 21 6 1.8316 0.1417 -2.4079 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 1.9031 -0.5274 4.4376 26 1 0.6243 -1.9988 -2.0245 27 1 1.0695 -2.3313 -0.3323 28 1 2.2254 -4.0122 -1.5410 29 1 3.4635 -2.7735 -1.2634 30 1 4.6474 -3.8092 -3.2239 31 1 3.2719 -4.9373 -3.2823 32 1 3.6895 -3.9681 -4.7157 33 1 4.4736 0.0062 -2.8519 34 1 5.1528 -1.6255 -2.6407 35 1 3.8150 -1.0770 -1.6026 36 1 4.7450 -2.3928 -4.9145 37 1 3.1755 -2.1047 -5.7030 38 1 4.2427 -0.7334 -5.3176 39 1 2.2187 0.0520 -4.5307 40 1 1.1551 -1.2302 -3.9232 41 1 0.8185 0.5438 -2.4048 42 1 2.5395 0.9700 -2.3784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712632231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:08 Heat of formation + Delta-G solvation = 20.522708 kcal Electronic energy + Delta-G solvation = -19366.099766 eV Core-core repulsion = 16767.601534 eV Total energy + Delta-G solvation = -2598.498232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40322 -38.22295 -34.98097 -34.46636 -32.31656 -29.87545 -28.93361 -28.09889 -27.12291 -25.54748 -24.43590 -22.76323 -20.42603 -19.22545 -18.62718 -17.51502 -17.01087 -16.69503 -16.17090 -15.66990 -15.29437 -14.91630 -14.44299 -14.30940 -14.20221 -13.95482 -13.49947 -13.13752 -13.00786 -12.95946 -12.78336 -12.67505 -12.37802 -12.12034 -12.04174 -11.98928 -11.75898 -11.59264 -11.52655 -11.28149 -11.22288 -11.01219 -10.72870 -8.97420 -8.60550 -8.25281 -6.26611 1.30042 1.35762 1.45345 2.33188 3.07619 3.11095 3.26305 3.95893 4.04976 4.14858 4.33910 4.42923 4.46535 4.48682 4.58453 4.59951 4.60575 4.68386 4.72578 4.79232 4.85898 4.89521 4.95412 5.01040 5.04583 5.08327 5.16619 5.17540 5.22625 5.35627 5.36473 5.42561 5.50960 5.66421 5.95928 6.14217 6.38829 6.55363 6.60442 6.78489 6.83316 7.38019 8.91590 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.007596 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.654419 B = 3685.245488 C = 3970.227049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.186 3.814 3 H 0.030 0.970 4 C -0.494 4.494 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.948 3.052 9 H -0.271 1.271 10 H -0.301 1.301 11 H -0.250 1.250 12 N -0.534 5.534 13 C 0.079 3.921 14 C 0.080 3.920 15 N -0.547 5.547 16 C 0.028 3.972 17 C 0.120 3.880 18 C -0.195 4.195 19 C -0.138 4.138 20 C -0.100 4.100 21 C 0.056 3.944 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -0.496 -17.444 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.078 3.922 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.058 0.942 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.229 1.229 11 H -0.174 1.174 12 N -0.258 5.258 13 C -0.050 4.050 14 C -0.050 4.050 15 N -0.271 5.271 16 C -0.120 4.120 17 C 0.032 3.968 18 C -0.254 4.254 19 C -0.195 4.195 20 C -0.138 4.138 21 C -0.071 4.071 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.229 -0.625 -17.434 17.446 hybrid contribution -0.352 0.687 1.347 1.553 sum -0.580 0.062 -16.086 16.097 Atomic orbital electron populations 1.22702 1.00015 1.01244 0.99689 1.19576 0.89758 0.94329 0.88558 0.95189 1.21159 1.30000 1.12309 0.89810 0.94238 1.25718 0.97518 0.99751 0.95487 1.70031 1.48014 1.42557 0.98473 0.85881 0.79024 0.80407 0.77120 1.19724 1.22902 1.17431 1.60887 1.59566 1.02903 1.02403 1.21681 0.94946 0.88997 0.99357 1.20861 0.97594 0.98331 0.88235 1.59644 1.48762 1.04325 1.14371 1.22443 0.93764 0.93978 1.01776 1.20689 0.93417 0.87803 0.94870 1.22906 0.98050 0.99729 1.04667 1.22038 1.00271 1.02506 0.94691 1.21495 0.98443 0.97872 0.95971 1.22490 0.99148 0.95996 0.89491 0.92379 0.92807 0.94759 0.92726 0.93763 0.92389 0.91642 0.97029 0.96599 0.91638 0.89412 0.92991 0.95478 0.88090 0.92272 0.91227 0.91314 0.89172 0.91630 0.94945 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.34 8.18 71.98 0.59 -6.76 16 2 C 0.19 8.49 1.86 44.17 0.08 8.58 16 3 H 0.03 1.42 7.09 -2.39 -0.02 1.41 16 4 C -0.49 -27.74 8.15 25.60 0.21 -27.53 16 5 H 0.04 2.49 7.85 -2.91 -0.02 2.47 16 6 C 0.01 0.70 5.45 84.65 0.46 1.16 16 7 N -0.95 -59.36 13.96 21.44 0.30 -59.06 16 8 Si 0.95 44.99 24.37 68.60 1.67 46.66 16 9 H -0.27 -12.32 6.87 99.48 0.68 -11.64 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 12 N -0.53 -20.94 1.77 -873.94 -1.54 -22.48 16 13 C 0.08 2.99 3.88 87.15 0.34 3.33 16 14 C 0.08 2.77 4.80 87.95 0.42 3.19 16 15 N -0.55 -15.58 4.24 -888.80 -3.77 -19.34 16 16 C 0.03 0.65 8.30 127.69 1.06 1.71 16 17 C 0.12 3.20 0.72 2.62 0.00 3.21 16 18 C -0.19 -6.20 6.66 71.98 0.48 -5.72 16 19 C -0.14 -2.76 7.07 71.98 0.51 -2.25 16 20 C -0.10 -2.58 4.80 30.19 0.15 -2.44 16 21 C 0.06 1.76 4.56 86.39 0.39 2.16 16 22 H 0.06 2.04 6.65 -2.39 -0.02 2.03 16 23 H 0.05 2.22 6.54 -2.38 -0.02 2.20 16 24 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.04 1.55 6.94 -2.39 -0.02 1.54 16 27 H 0.06 2.55 5.83 -2.39 -0.01 2.53 16 28 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 29 H 0.01 0.47 6.19 -2.39 -0.01 0.45 16 30 H 0.02 0.39 7.69 -2.39 -0.02 0.37 16 31 H 0.06 1.46 7.89 -2.39 -0.02 1.44 16 32 H 0.09 1.68 6.35 -2.39 -0.02 1.67 16 33 H 0.05 1.55 7.68 -2.39 -0.02 1.54 16 34 H 0.03 0.84 7.82 -2.39 -0.02 0.82 16 35 H 0.10 4.00 3.64 -2.39 -0.01 3.99 16 36 H 0.06 1.15 6.52 -2.39 -0.02 1.14 16 37 H 0.07 1.25 8.00 -2.39 -0.02 1.23 16 38 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.09 1.87 7.71 -2.39 -0.02 1.85 16 40 H 0.07 1.75 7.25 -2.39 -0.02 1.73 16 41 H 0.03 1.00 6.43 -2.39 -0.02 0.98 16 42 H 0.06 2.02 7.61 -2.39 -0.02 2.00 16 Total: -1.00 -62.57 288.49 2.26 -60.32 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.90 Total: 15.28 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.69 Total: -21.37 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -5.01 Total: -100.89 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -62.57 2.26 -60.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712632231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.838 kcal (2) G-P(sol) polarization free energy of solvation -62.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds