Wall clock time and date at job start Mon Mar 30 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 H 1.08994 * 109.47465 * 35.00194 * 3 2 1 5 5 C 1.53000 * 109.47140 * 275.00023 * 3 2 1 6 6 C 1.53002 * 109.47349 * 300.00081 * 5 3 2 7 7 C 1.53006 * 109.46994 * 300.00261 * 6 5 3 8 8 C 1.53000 * 109.47286 * 59.99701 * 7 6 5 9 9 H 1.09006 * 109.47131 * 59.99671 * 8 7 6 10 10 N 1.46895 * 109.47144 * 179.97438 * 8 7 6 11 11 C 1.46905 * 111.00110 * 176.04702 * 10 8 7 12 12 C 1.46905 * 111.00165 * 300.00066 * 10 8 7 13 13 H 1.08998 * 109.46923 * 54.99812 * 12 10 8 14 14 C 1.52995 * 109.46936 * 295.00051 * 12 10 8 15 15 C 1.50692 * 109.47000 * 174.99982 * 12 10 8 16 16 H 1.08001 * 120.00626 * 359.97438 * 15 12 10 17 17 C 1.37883 * 120.00040 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99385 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00199 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47175 * 90.00151 * 19 17 15 21 21 H 1.48503 * 109.47006 * 209.99870 * 19 17 15 22 22 H 1.48502 * 109.47206 * 329.99782 * 19 17 15 23 23 C 1.52997 * 109.47045 * 300.00178 * 8 7 6 24 24 H 1.08992 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47040 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47033 * 59.99886 * 1 2 3 27 27 H 1.00904 * 110.99860 * 236.04904 * 2 1 3 28 28 H 1.08994 * 109.47134 * 60.00288 * 5 3 2 29 29 H 1.09006 * 109.47131 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47070 * 59.99833 * 6 5 3 31 31 H 1.08994 * 109.47329 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46538 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46863 * 299.99699 * 7 6 5 34 34 H 1.08994 * 109.47079 * 59.99548 * 11 10 8 35 35 H 1.08999 * 109.46808 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.46672 * 300.00205 * 11 10 8 37 37 H 1.08997 * 109.47008 * 179.97438 * 14 12 10 38 38 H 1.08998 * 109.47119 * 299.99641 * 14 12 10 39 39 H 1.08996 * 109.47128 * 59.99909 * 14 12 10 40 40 H 0.97004 * 119.99522 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47143 * 300.00026 * 23 8 7 42 42 H 1.09004 * 109.47469 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0123 0.5894 5 6 2.0608 1.8926 -1.4370 6 6 2.9812 0.9931 -2.2645 7 6 4.3846 1.0006 -1.6548 8 6 4.3192 0.4795 -0.2178 9 1 3.9285 -0.5382 -0.2178 10 7 5.6666 0.4862 0.3673 11 6 5.6297 0.0801 1.7786 12 6 6.5793 -0.3693 -0.4029 13 1 6.5734 -0.0587 -1.4477 14 6 6.1211 -1.8255 -0.3012 15 6 7.9748 -0.2418 0.1512 16 1 8.1649 0.4098 0.9913 17 6 9.0093 -0.9563 -0.4149 18 7 8.7781 -1.7486 -1.4388 19 14 10.7393 -0.7978 0.2716 20 1 10.9463 -1.8163 1.3323 21 1 11.7256 -1.0105 -0.8181 22 1 10.9215 0.5594 0.8461 23 6 3.3988 1.3790 0.6096 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.0612 1.8872 -1.8713 29 1 2.4519 2.9101 -1.4370 30 1 2.5906 -0.0246 -2.2645 31 1 3.0274 1.3641 -3.2883 32 1 5.0401 0.3594 -2.2441 33 1 4.7752 2.0183 -1.6548 34 1 5.2199 -0.9268 1.8564 35 1 6.6401 0.0942 2.1872 36 1 5.0016 0.7723 2.3395 37 1 6.7981 -2.4601 -0.8730 38 1 6.1270 -2.1360 0.7436 39 1 5.1117 -1.9176 -0.7020 40 1 9.5058 -2.2516 -1.8368 41 1 3.7894 2.3966 0.6096 42 1 3.3518 1.0075 1.6333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712702040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:55 Heat of formation + Delta-G solvation = 0.109076 kcal Electronic energy + Delta-G solvation = -18779.463048 eV Core-core repulsion = 16180.079614 eV Total energy + Delta-G solvation = -2599.383434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44445 -36.64292 -33.65778 -32.48854 -30.23645 -29.07642 -27.98126 -25.13483 -24.73051 -24.65427 -22.04655 -21.46734 -19.34812 -18.22268 -16.37487 -16.05179 -15.02999 -14.86961 -14.55227 -14.30364 -13.77457 -13.45590 -13.30462 -12.79591 -12.71232 -12.28199 -12.07686 -11.73686 -11.60771 -11.46228 -11.11551 -11.09303 -10.84475 -10.64882 -10.59793 -10.57363 -10.26297 -10.02548 -9.92226 -9.74963 -9.24589 -8.73879 -8.30815 -8.29475 -6.96272 -5.94626 -3.97245 3.34526 3.40992 3.45307 4.34218 4.46558 4.87443 4.92676 5.03306 5.29407 5.35022 5.38119 5.40191 5.55010 5.70807 5.75492 5.79785 5.82148 5.86965 6.03869 6.14715 6.23306 6.26155 6.43372 6.46248 6.57477 6.62542 6.76730 6.83095 6.88918 6.98405 7.02565 7.14366 7.26494 7.46041 7.63808 7.82012 7.93525 8.25610 8.50765 8.73859 9.09360 9.67308 11.12507 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041873 B = 0.005999 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.528888 B = 4665.951051 C = 4788.400880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.089 3.911 4 H 0.071 0.929 5 C -0.148 4.148 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.087 3.913 9 H 0.041 0.959 10 N -0.533 5.533 11 C 0.035 3.965 12 C 0.208 3.792 13 H 0.043 0.957 14 C -0.171 4.171 15 C -0.497 4.497 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.101 4.101 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.344 0.656 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.015 0.985 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.008 0.992 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 4.587 0.612 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.022 4.022 4 H 0.090 0.910 5 C -0.187 4.187 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.022 4.022 9 H 0.059 0.941 10 N -0.257 5.257 11 C -0.114 4.114 12 C 0.102 3.898 13 H 0.061 0.939 14 C -0.230 4.230 15 C -0.535 4.535 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.139 4.139 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.165 0.835 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.575 4.874 1.155 14.470 hybrid contribution 0.430 -0.637 -0.608 0.980 sum -13.145 4.237 0.546 13.822 Atomic orbital electron populations 1.22196 0.88731 1.01399 0.99898 1.60623 1.06848 1.14122 1.50563 1.21605 0.96865 0.88923 0.94783 0.91035 1.22185 0.99037 1.00568 0.96899 1.21527 0.96268 0.99017 0.98743 1.21623 0.95147 1.02280 0.96079 1.21449 0.90269 0.97200 0.93274 0.94140 1.62371 1.06641 1.54583 1.02082 1.22227 1.01594 0.96938 0.90614 1.19324 0.90099 0.86398 0.93981 0.93902 1.22371 0.97703 1.03129 0.99815 1.21166 0.91845 1.24812 1.15726 0.92063 1.24921 0.98886 0.95444 0.95104 1.69894 1.31871 1.28585 1.23195 0.86559 0.84350 0.78383 0.78471 1.20906 1.21387 1.19902 1.21651 0.92479 1.00338 0.99423 0.91869 0.92050 0.96388 0.83498 0.92901 0.91302 0.92672 0.92110 0.91101 0.91605 0.96678 0.91132 0.93794 0.89637 0.95278 0.97340 0.93153 0.91528 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.07 0.63 0.92 16 2 N -0.69 -8.92 6.12 -114.01 -0.70 -9.62 16 3 C 0.09 1.14 2.86 -67.71 -0.19 0.95 16 4 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 5 C -0.15 -1.77 5.52 -26.73 -0.15 -1.92 16 6 C -0.12 -1.58 5.67 -26.73 -0.15 -1.73 16 7 C -0.11 -1.94 4.98 -26.73 -0.13 -2.07 16 8 C 0.09 1.57 1.42 -67.72 -0.10 1.48 16 9 H 0.04 0.79 5.50 -51.93 -0.29 0.50 16 10 N -0.53 -11.53 4.61 -228.30 -1.05 -12.58 16 11 C 0.03 0.71 8.34 60.07 0.50 1.21 16 12 C 0.21 5.24 2.08 -68.87 -0.14 5.09 16 13 H 0.04 1.17 6.05 -51.93 -0.31 0.86 16 14 C -0.17 -4.22 8.27 37.16 0.31 -3.91 16 15 C -0.50 -13.70 7.88 -34.44 -0.27 -13.97 16 16 H 0.06 1.70 6.77 -52.49 -0.36 1.34 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.90 -25.69 11.32 55.43 0.63 -25.06 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.10 -1.55 4.56 -26.73 -0.12 -1.67 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 26 H 0.02 0.17 7.44 -51.93 -0.39 -0.22 16 27 H 0.34 4.60 5.65 -39.29 -0.22 4.37 16 28 H 0.05 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.73 6.26 -51.93 -0.32 0.40 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.38 6.30 -51.93 -0.33 1.05 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.01 0.31 6.51 -51.93 -0.34 -0.03 16 35 H 0.07 1.53 6.42 -51.93 -0.33 1.20 16 36 H 0.04 0.78 6.24 -51.93 -0.32 0.46 16 37 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 38 H 0.03 0.70 6.47 -51.93 -0.34 0.37 16 39 H 0.01 0.18 6.52 -51.93 -0.34 -0.16 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.06 6.35 -51.93 -0.33 0.74 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -28.13 301.15 -8.51 -36.64 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.99 Total: 3.68 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -1.12 Total: -47.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.13 -8.51 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712702040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.745 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds