Wall clock time and date at job start Mon Mar 30 2020 03:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 H 1.08994 * 109.47465 * 35.00194 * 3 2 1 5 5 C 1.53000 * 109.47140 * 275.00023 * 3 2 1 6 6 C 1.53002 * 109.47349 * 300.00081 * 5 3 2 7 7 C 1.53006 * 109.46994 * 300.00261 * 6 5 3 8 8 C 1.53000 * 109.47286 * 59.99701 * 7 6 5 9 9 H 1.09006 * 109.47131 * 59.99671 * 8 7 6 10 10 N 1.46895 * 109.47144 * 179.97438 * 8 7 6 11 11 C 1.46905 * 111.00110 * 176.04702 * 10 8 7 12 12 C 1.46905 * 111.00165 * 300.00066 * 10 8 7 13 13 H 1.08998 * 109.46923 * 54.99812 * 12 10 8 14 14 C 1.52995 * 109.46936 * 295.00051 * 12 10 8 15 15 C 1.50692 * 109.47000 * 174.99982 * 12 10 8 16 16 H 1.08001 * 120.00626 * 359.97438 * 15 12 10 17 17 C 1.37883 * 120.00040 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99385 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00199 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47175 * 90.00151 * 19 17 15 21 21 H 1.48503 * 109.47006 * 209.99870 * 19 17 15 22 22 H 1.48502 * 109.47206 * 329.99782 * 19 17 15 23 23 C 1.52997 * 109.47045 * 300.00178 * 8 7 6 24 24 H 1.08992 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47040 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47033 * 59.99886 * 1 2 3 27 27 H 1.00904 * 110.99860 * 236.04904 * 2 1 3 28 28 H 1.08994 * 109.47134 * 60.00288 * 5 3 2 29 29 H 1.09006 * 109.47131 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47070 * 59.99833 * 6 5 3 31 31 H 1.08994 * 109.47329 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46538 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46863 * 299.99699 * 7 6 5 34 34 H 1.08994 * 109.47079 * 59.99548 * 11 10 8 35 35 H 1.08999 * 109.46808 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.46672 * 300.00205 * 11 10 8 37 37 H 1.08997 * 109.47008 * 179.97438 * 14 12 10 38 38 H 1.08998 * 109.47119 * 299.99641 * 14 12 10 39 39 H 1.08996 * 109.47128 * 59.99909 * 14 12 10 40 40 H 0.97004 * 119.99522 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47143 * 300.00026 * 23 8 7 42 42 H 1.09004 * 109.47469 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0123 0.5894 5 6 2.0608 1.8926 -1.4370 6 6 2.9812 0.9931 -2.2645 7 6 4.3846 1.0006 -1.6548 8 6 4.3192 0.4795 -0.2178 9 1 3.9285 -0.5382 -0.2178 10 7 5.6666 0.4862 0.3673 11 6 5.6297 0.0801 1.7786 12 6 6.5793 -0.3693 -0.4029 13 1 6.5734 -0.0587 -1.4477 14 6 6.1211 -1.8255 -0.3012 15 6 7.9748 -0.2418 0.1512 16 1 8.1649 0.4098 0.9913 17 6 9.0093 -0.9563 -0.4149 18 7 8.7781 -1.7486 -1.4388 19 14 10.7393 -0.7978 0.2716 20 1 10.9463 -1.8163 1.3323 21 1 11.7256 -1.0105 -0.8181 22 1 10.9215 0.5594 0.8461 23 6 3.3988 1.3790 0.6096 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.0612 1.8872 -1.8713 29 1 2.4519 2.9101 -1.4370 30 1 2.5906 -0.0246 -2.2645 31 1 3.0274 1.3641 -3.2883 32 1 5.0401 0.3594 -2.2441 33 1 4.7752 2.0183 -1.6548 34 1 5.2199 -0.9268 1.8564 35 1 6.6401 0.0942 2.1872 36 1 5.0016 0.7723 2.3395 37 1 6.7981 -2.4601 -0.8730 38 1 6.1270 -2.1360 0.7436 39 1 5.1117 -1.9176 -0.7020 40 1 9.5058 -2.2516 -1.8368 41 1 3.7894 2.3966 0.6096 42 1 3.3518 1.0075 1.6333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712702040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:54 Heat of formation + Delta-G solvation = -18.496601 kcal Electronic energy + Delta-G solvation = -18780.269851 eV Core-core repulsion = 16180.079614 eV Total energy + Delta-G solvation = -2600.190236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74311 -38.17852 -35.10331 -34.18227 -31.72380 -30.37236 -29.63775 -27.25458 -26.27993 -25.61829 -23.43301 -22.87655 -20.86579 -19.60780 -18.26407 -17.45389 -16.75197 -16.21485 -15.92656 -15.51986 -15.18731 -15.05366 -14.74066 -14.30971 -13.99418 -13.59571 -13.29143 -13.22298 -13.10767 -12.95864 -12.85442 -12.52474 -12.48407 -12.35627 -12.25078 -11.97945 -11.94026 -11.84258 -11.42453 -11.11345 -10.80755 -10.72173 -10.38867 -9.24931 -8.72644 -8.07774 -6.17627 1.42727 1.43419 1.54195 2.44883 3.21193 3.38808 3.42450 3.82191 3.95045 4.11002 4.33294 4.40435 4.54242 4.55115 4.59778 4.60630 4.70079 4.75695 4.79027 4.81506 4.90079 4.95977 5.00631 5.08140 5.11575 5.17608 5.21189 5.24133 5.29555 5.36883 5.46162 5.54601 5.62341 5.77726 5.87028 6.20675 6.28103 6.48139 6.57893 6.88287 6.97802 7.51342 8.98366 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041873 B = 0.005999 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.528888 B = 4665.951051 C = 4788.400880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.705 5.705 3 C 0.094 3.906 4 H 0.089 0.911 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.110 4.110 8 C 0.090 3.910 9 H 0.028 0.972 10 N -0.543 5.543 11 C 0.041 3.959 12 C 0.215 3.785 13 H 0.016 0.984 14 C -0.155 4.155 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.094 4.094 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.339 0.661 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.009 0.991 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.368 5.521 1.120 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.338 5.338 3 C -0.017 4.017 4 H 0.108 0.892 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.019 4.019 9 H 0.046 0.954 10 N -0.266 5.266 11 C -0.107 4.107 12 C 0.108 3.892 13 H 0.033 0.967 14 C -0.214 4.214 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.132 4.132 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.160 0.840 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.052 5.817 1.673 16.223 hybrid contribution 0.847 -0.929 -0.768 1.474 sum -14.205 4.888 0.905 15.049 Atomic orbital electron populations 1.22241 0.86985 1.02128 1.00721 1.60596 1.08568 1.14039 1.50566 1.21546 0.95292 0.89438 0.95383 0.89247 1.22126 0.99645 1.00136 0.95982 1.21472 0.94050 0.99917 0.99438 1.21553 0.97097 1.00797 0.95300 1.21514 0.88720 0.97379 0.94238 0.95385 1.62304 1.08304 1.53555 1.02478 1.22180 1.01018 0.97406 0.90122 1.19053 0.90336 0.86976 0.92878 0.96667 1.22158 0.97776 1.02427 0.99043 1.21443 0.93350 1.24778 1.15655 0.92714 1.25679 1.02620 0.95129 0.95377 1.70022 1.32909 1.29136 1.24139 0.85569 0.79766 0.78476 0.77879 1.20300 1.20987 1.19444 1.21590 0.93576 0.99338 0.98700 0.91316 0.91415 0.95233 0.84040 0.90745 0.90831 0.92390 0.90900 0.94427 0.92344 0.97253 0.92969 0.90947 0.92288 0.95573 0.95895 0.93115 0.91492 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.50 127.69 1.34 1.84 16 2 N -0.71 -16.56 6.12 -514.61 -3.15 -19.71 16 3 C 0.09 2.15 2.86 44.92 0.13 2.27 16 4 H 0.09 1.79 7.80 -2.39 -0.02 1.77 16 5 C -0.14 -2.92 5.52 30.59 0.17 -2.75 16 6 C -0.11 -2.79 5.67 30.60 0.17 -2.62 16 7 C -0.11 -3.75 4.98 30.60 0.15 -3.60 16 8 C 0.09 3.22 1.42 44.92 0.06 3.29 16 9 H 0.03 1.09 5.50 -2.38 -0.01 1.08 16 10 N -0.54 -23.70 4.61 -876.21 -4.04 -27.74 16 11 C 0.04 1.66 8.34 127.69 1.06 2.73 16 12 C 0.21 11.11 2.08 44.16 0.09 11.20 16 13 H 0.02 0.88 6.05 -2.39 -0.01 0.87 16 14 C -0.15 -7.82 8.27 71.98 0.60 -7.22 16 15 C -0.51 -28.89 7.88 25.60 0.20 -28.69 16 16 H 0.05 3.08 6.77 -2.91 -0.02 3.07 16 17 C 0.01 0.56 5.30 84.66 0.45 1.01 16 18 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 19 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 C -0.09 -2.72 4.56 30.59 0.14 -2.58 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.11 8.06 -2.38 -0.02 1.09 16 26 H 0.03 0.46 7.44 -2.39 -0.02 0.44 16 27 H 0.34 8.43 5.65 -89.69 -0.51 7.92 16 28 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.06 1.44 6.26 -2.39 -0.01 1.43 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.52 6.30 -2.39 -0.02 1.50 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.01 0.37 6.51 -2.39 -0.02 0.36 16 35 H 0.05 2.28 6.42 -2.39 -0.02 2.26 16 36 H 0.07 2.49 6.24 -2.39 -0.01 2.48 16 37 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 38 H 0.03 1.28 6.47 -2.39 -0.02 1.27 16 39 H 0.02 1.04 6.52 -2.39 -0.02 1.02 16 40 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.84 6.35 -2.39 -0.02 1.82 16 Total: -1.00 -60.71 301.15 0.14 -60.57 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.49 Total: 19.11 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.57 Total: -25.12 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.95 Total: -101.17 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.71 0.14 -60.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712702040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.071 kcal (2) G-P(sol) polarization free energy of solvation -60.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds