Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 110.99828 * 2 1 4 4 H 1.08996 * 109.47811 * 34.99953 * 3 2 1 5 5 C 1.53004 * 109.47233 * 274.99447 * 3 2 1 6 6 C 1.52997 * 109.47570 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46770 * 60.00064 * 6 5 3 8 8 C 1.52993 * 109.47307 * 300.00056 * 7 6 5 9 9 H 1.08999 * 109.47709 * 299.99901 * 8 7 6 10 10 N 1.46898 * 109.47078 * 179.97438 * 8 7 6 11 11 C 1.46902 * 111.00283 * 306.05159 * 10 8 7 12 12 C 1.46906 * 110.99888 * 70.00120 * 10 8 7 13 13 H 1.09000 * 109.47033 * 300.00113 * 12 10 8 14 14 C 1.52997 * 109.46907 * 59.99949 * 12 10 8 15 15 C 1.50699 * 109.47140 * 180.02562 * 12 10 8 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 12 10 18 18 N 1.31522 * 119.99835 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00496 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47183 * 60.00274 * 19 17 15 21 21 H 1.48496 * 109.47425 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47216 * 300.00267 * 19 17 15 23 23 C 1.53005 * 109.47097 * 154.99949 * 3 2 1 24 24 H 1.08996 * 109.47036 * 299.99667 * 1 2 3 25 25 H 1.08992 * 109.46965 * 60.00423 * 1 2 3 26 26 H 1.08999 * 109.46641 * 180.02562 * 1 2 3 27 27 H 1.00900 * 111.00033 * 123.95135 * 2 1 3 28 28 H 1.08996 * 109.47135 * 300.00920 * 5 3 2 29 29 H 1.09006 * 109.46665 * 59.99903 * 5 3 2 30 30 H 1.08996 * 109.47420 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.47039 * 300.00903 * 6 5 3 32 32 H 1.08996 * 109.46786 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.46655 * 60.00603 * 7 6 5 34 34 H 1.09004 * 109.47457 * 183.95363 * 11 10 8 35 35 H 1.09001 * 109.46615 * 303.95014 * 11 10 8 36 36 H 1.08990 * 109.47358 * 63.94680 * 11 10 8 37 37 H 1.09001 * 109.47230 * 179.97438 * 14 12 10 38 38 H 1.09001 * 109.47375 * 300.00212 * 14 12 10 39 39 H 1.09000 * 109.47140 * 60.00230 * 14 12 10 40 40 H 0.96992 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46940 * 60.00133 * 23 3 2 42 42 H 1.08996 * 109.46820 * 299.99752 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 2.6086 3.3212 -1.4371 7 6 4.0118 3.3294 -0.8271 8 6 3.9463 2.8083 0.6098 9 1 3.2903 3.4489 1.1992 10 7 5.2936 2.8156 1.1952 11 6 6.2400 2.0781 0.3476 12 6 5.7579 4.1894 1.4305 13 1 5.7847 4.7308 0.4848 14 6 4.8004 4.8932 2.3942 15 6 7.1403 4.1568 2.0294 16 1 7.6254 3.2102 2.2170 17 6 7.7860 5.3353 2.3380 18 7 7.1951 6.4880 2.1101 19 14 9.4993 5.2949 3.0811 20 1 10.4285 4.6111 2.1460 21 1 9.9686 6.6835 3.3188 22 1 9.4627 4.5578 4.3698 23 6 3.3987 1.3790 0.6097 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.7165 1.2516 -2.0264 29 1 1.0612 1.8870 -1.8714 30 1 2.6548 3.6926 -2.4608 31 1 1.9525 3.9617 -0.8477 32 1 4.4021 4.3471 -0.8276 33 1 4.6678 2.6888 -1.4165 34 1 7.2128 2.0391 0.8378 35 1 5.8720 1.0644 0.1892 36 1 6.3372 2.5835 -0.6132 37 1 5.1451 5.9124 2.5692 38 1 3.8006 4.9168 1.9606 39 1 4.7736 4.3518 3.3398 40 1 7.6494 7.3171 2.3268 41 1 4.0544 0.7382 0.0202 42 1 3.3521 1.0078 1.6334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712702044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -4.359937 kcal Electronic energy + Delta-G solvation = -18538.695840 eV Core-core repulsion = 15939.118615 eV Total energy + Delta-G solvation = -2599.577225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29062 -36.56756 -34.10070 -32.54493 -30.08050 -29.10439 -28.39528 -25.35072 -24.77021 -24.03159 -22.00884 -21.31651 -19.71168 -18.45405 -16.27303 -15.91329 -15.19205 -14.96108 -14.56374 -14.13520 -14.07749 -13.52167 -13.21662 -13.16444 -12.87754 -12.30218 -11.99094 -11.73127 -11.60733 -11.52871 -11.09690 -10.91517 -10.90661 -10.78643 -10.59829 -10.38027 -10.03071 -9.99928 -9.99647 -9.88846 -9.52328 -8.81732 -8.46427 -8.38061 -7.03651 -5.98288 -4.02381 3.33556 3.37823 3.40788 4.16630 4.43079 4.81656 5.00724 5.24559 5.31589 5.32231 5.37542 5.43388 5.50734 5.57405 5.69897 5.76588 5.81825 5.86863 6.00197 6.15820 6.19687 6.26199 6.38863 6.44959 6.46930 6.53344 6.69204 6.74334 6.86373 6.94057 7.07163 7.09997 7.21786 7.36296 7.58476 7.78903 7.86494 8.26306 8.37555 8.66898 9.04356 9.62407 11.08452 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044328 B = 0.005546 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.506105 B = 5047.653859 C = 5182.627269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.087 3.913 4 H 0.042 0.958 5 C -0.102 4.102 6 C -0.114 4.114 7 C -0.152 4.152 8 C 0.085 3.915 9 H 0.079 0.921 10 N -0.532 5.532 11 C 0.034 3.966 12 C 0.212 3.788 13 H 0.002 0.998 14 C -0.133 4.133 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.109 4.109 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.341 0.659 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.015 0.985 37 H 0.084 0.916 38 H 0.008 0.992 39 H 0.032 0.968 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 -8.659 -4.971 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.023 4.023 4 H 0.060 0.940 5 C -0.140 4.140 6 C -0.153 4.153 7 C -0.191 4.191 8 C -0.025 4.025 9 H 0.097 0.903 10 N -0.255 5.255 11 C -0.114 4.114 12 C 0.106 3.894 13 H 0.019 0.981 14 C -0.191 4.191 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.147 4.147 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.102 0.898 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.444 -8.765 -5.152 14.576 hybrid contribution 0.742 0.797 0.530 1.212 sum -9.702 -7.967 -4.622 13.378 Atomic orbital electron populations 1.22210 0.88356 1.01352 1.00249 1.60445 1.07297 1.14653 1.49971 1.21575 0.95900 0.88278 0.96512 0.94029 1.21489 1.00420 0.96026 0.96075 1.21476 0.97155 0.96291 1.00383 1.22231 0.96391 1.02170 0.98340 1.21653 0.93338 0.94869 0.92671 0.90331 1.62325 0.99996 1.18852 1.44319 1.22246 0.97772 0.96162 0.95259 1.19233 0.93816 0.82120 0.94251 0.98070 1.21851 0.95167 1.03366 0.98715 1.21148 0.99561 0.92507 1.40940 0.92003 1.24924 0.97969 0.95482 0.95859 1.69884 1.37574 0.97219 1.48690 0.86603 0.84447 0.76841 0.79748 1.20377 1.21408 1.20273 1.21743 0.94460 0.98075 1.00428 0.96170 0.91902 0.91815 0.84074 0.91589 0.92877 0.92395 0.92417 0.91483 0.91948 0.90993 0.93772 0.96625 0.89766 0.97359 0.94851 0.93009 0.91320 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.50 60.07 0.63 0.91 16 2 N -0.69 -8.10 6.66 -114.01 -0.76 -8.86 16 3 C 0.09 1.14 2.49 -67.71 -0.17 0.97 16 4 H 0.04 0.57 7.80 -51.93 -0.41 0.16 16 5 C -0.10 -1.32 5.42 -26.73 -0.15 -1.46 16 6 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 7 C -0.15 -2.57 4.45 -26.73 -0.12 -2.69 16 8 C 0.08 1.51 2.01 -67.69 -0.14 1.38 16 9 H 0.08 1.50 5.83 -51.93 -0.30 1.19 16 10 N -0.53 -11.36 4.57 -228.26 -1.04 -12.40 16 11 C 0.03 0.67 8.36 60.07 0.50 1.18 16 12 C 0.21 5.32 1.85 -68.86 -0.13 5.19 16 13 H 0.00 0.05 6.62 -51.93 -0.34 -0.30 16 14 C -0.13 -3.27 8.77 37.16 0.33 -2.94 16 15 C -0.50 -13.78 7.93 -34.44 -0.27 -14.06 16 16 H 0.06 1.69 6.39 -52.48 -0.34 1.36 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.64 4.41 -26.70 -0.12 -1.75 16 24 H 0.02 0.19 8.05 -51.93 -0.42 -0.23 16 25 H 0.06 0.61 7.43 -51.93 -0.39 0.23 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.34 3.71 8.43 -39.29 -0.33 3.38 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.63 7.45 -51.93 -0.39 0.24 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.29 6.69 -51.93 -0.35 0.95 16 33 H 0.06 1.05 6.41 -51.93 -0.33 0.72 16 34 H 0.07 1.53 6.23 -51.93 -0.32 1.20 16 35 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 36 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 37 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 38 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 42 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -27.96 306.82 -8.67 -36.63 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.22 Total: 2.03 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.12 Total: -13.49 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.18 Total: -46.18 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.96 -8.67 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712702044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.271 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds