Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 110.99828 * 2 1 4 4 H 1.08996 * 109.47811 * 34.99953 * 3 2 1 5 5 C 1.53004 * 109.47233 * 274.99447 * 3 2 1 6 6 C 1.52997 * 109.47570 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46770 * 60.00064 * 6 5 3 8 8 C 1.52993 * 109.47307 * 300.00056 * 7 6 5 9 9 H 1.08999 * 109.47709 * 299.99901 * 8 7 6 10 10 N 1.46898 * 109.47078 * 179.97438 * 8 7 6 11 11 C 1.46902 * 111.00283 * 306.05159 * 10 8 7 12 12 C 1.46906 * 110.99888 * 70.00120 * 10 8 7 13 13 H 1.09000 * 109.47033 * 300.00113 * 12 10 8 14 14 C 1.52997 * 109.46907 * 59.99949 * 12 10 8 15 15 C 1.50699 * 109.47140 * 180.02562 * 12 10 8 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 12 10 18 18 N 1.31522 * 119.99835 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00496 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47183 * 60.00274 * 19 17 15 21 21 H 1.48496 * 109.47425 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47216 * 300.00267 * 19 17 15 23 23 C 1.53005 * 109.47097 * 154.99949 * 3 2 1 24 24 H 1.08996 * 109.47036 * 299.99667 * 1 2 3 25 25 H 1.08992 * 109.46965 * 60.00423 * 1 2 3 26 26 H 1.08999 * 109.46641 * 180.02562 * 1 2 3 27 27 H 1.00900 * 111.00033 * 123.95135 * 2 1 3 28 28 H 1.08996 * 109.47135 * 300.00920 * 5 3 2 29 29 H 1.09006 * 109.46665 * 59.99903 * 5 3 2 30 30 H 1.08996 * 109.47420 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.47039 * 300.00903 * 6 5 3 32 32 H 1.08996 * 109.46786 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.46655 * 60.00603 * 7 6 5 34 34 H 1.09004 * 109.47457 * 183.95363 * 11 10 8 35 35 H 1.09001 * 109.46615 * 303.95014 * 11 10 8 36 36 H 1.08990 * 109.47358 * 63.94680 * 11 10 8 37 37 H 1.09001 * 109.47230 * 179.97438 * 14 12 10 38 38 H 1.09001 * 109.47375 * 300.00212 * 14 12 10 39 39 H 1.09000 * 109.47140 * 60.00230 * 14 12 10 40 40 H 0.96992 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46940 * 60.00133 * 23 3 2 42 42 H 1.08996 * 109.46820 * 299.99752 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 2.6086 3.3212 -1.4371 7 6 4.0118 3.3294 -0.8271 8 6 3.9463 2.8083 0.6098 9 1 3.2903 3.4489 1.1992 10 7 5.2936 2.8156 1.1952 11 6 6.2400 2.0781 0.3476 12 6 5.7579 4.1894 1.4305 13 1 5.7847 4.7308 0.4848 14 6 4.8004 4.8932 2.3942 15 6 7.1403 4.1568 2.0294 16 1 7.6254 3.2102 2.2170 17 6 7.7860 5.3353 2.3380 18 7 7.1951 6.4880 2.1101 19 14 9.4993 5.2949 3.0811 20 1 10.4285 4.6111 2.1460 21 1 9.9686 6.6835 3.3188 22 1 9.4627 4.5578 4.3698 23 6 3.3987 1.3790 0.6097 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.7165 1.2516 -2.0264 29 1 1.0612 1.8870 -1.8714 30 1 2.6548 3.6926 -2.4608 31 1 1.9525 3.9617 -0.8477 32 1 4.4021 4.3471 -0.8276 33 1 4.6678 2.6888 -1.4165 34 1 7.2128 2.0391 0.8378 35 1 5.8720 1.0644 0.1892 36 1 6.3372 2.5835 -0.6132 37 1 5.1451 5.9124 2.5692 38 1 3.8006 4.9168 1.9606 39 1 4.7736 4.3518 3.3398 40 1 7.6494 7.3171 2.3268 41 1 4.0544 0.7382 0.0202 42 1 3.3521 1.0078 1.6334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712702044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -23.052371 kcal Electronic energy + Delta-G solvation = -18539.506405 eV Core-core repulsion = 15939.118615 eV Total energy + Delta-G solvation = -2600.387789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65447 -37.96777 -35.50426 -34.29963 -31.62516 -30.63775 -29.79047 -27.25574 -25.97296 -25.55843 -23.20853 -22.92267 -20.99263 -20.03170 -18.32421 -17.20379 -16.79334 -16.16056 -15.95049 -15.63165 -15.36492 -14.94414 -14.79555 -14.54876 -14.23433 -13.66210 -13.36684 -13.28225 -13.00177 -12.92868 -12.72007 -12.64067 -12.49329 -12.20289 -12.16098 -12.02404 -11.92205 -11.66109 -11.37381 -11.24632 -11.04579 -10.80093 -10.47929 -9.37021 -8.78614 -8.09666 -6.21107 1.42408 1.44098 1.51528 2.42950 3.14501 3.19924 3.44508 3.84070 4.00777 4.12907 4.25694 4.29249 4.45569 4.53750 4.58804 4.62584 4.66165 4.69891 4.73498 4.79116 4.87911 4.99624 5.04592 5.06577 5.11292 5.12242 5.19632 5.23185 5.28172 5.34328 5.41703 5.50009 5.57522 5.76935 5.83647 6.12063 6.28508 6.45000 6.50265 6.81817 6.94915 7.48005 8.95988 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044328 B = 0.005546 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.506105 B = 5047.653859 C = 5182.627269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.697 5.697 3 C 0.094 3.906 4 H 0.039 0.961 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.145 4.145 8 C 0.084 3.916 9 H 0.066 0.934 10 N -0.540 5.540 11 C 0.040 3.960 12 C 0.218 3.782 13 H -0.031 1.031 14 C -0.121 4.121 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.097 4.097 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.346 0.654 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.010 0.990 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 -10.196 -5.293 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.328 5.328 3 C -0.016 4.016 4 H 0.057 0.943 5 C -0.134 4.134 6 C -0.147 4.147 7 C -0.185 4.185 8 C -0.025 4.025 9 H 0.084 0.916 10 N -0.263 5.263 11 C -0.109 4.109 12 C 0.111 3.889 13 H -0.014 1.014 14 C -0.179 4.179 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.135 4.135 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.165 0.835 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.284 -10.324 -5.479 16.246 hybrid contribution 0.955 1.253 0.609 1.689 sum -10.329 -9.071 -4.871 14.584 Atomic orbital electron populations 1.22274 0.87005 1.02511 1.00410 1.60446 1.08561 1.13428 1.50325 1.21442 0.94435 0.89344 0.96384 0.94344 1.21430 1.01179 0.94817 0.95932 1.21433 0.94961 0.97457 1.00826 1.22122 0.98387 1.00004 0.97945 1.21711 0.91188 0.96870 0.92780 0.91601 1.62260 1.01730 1.16527 1.45737 1.22206 0.96862 0.97426 0.94370 1.18993 0.93395 0.83954 0.92548 1.01375 1.21663 0.96114 1.01600 0.98492 1.21452 1.00818 0.92478 1.41099 0.92370 1.25700 1.01643 0.95141 0.96259 1.70017 1.38978 0.97680 1.49429 0.85610 0.80036 0.76935 0.79032 1.19698 1.21020 1.19756 1.21610 0.95707 0.95545 1.00666 0.96019 0.91694 0.90223 0.83540 0.91814 0.91181 0.91092 0.92314 0.94729 0.92006 0.92766 0.90772 0.97166 0.92310 0.95366 0.95294 0.93033 0.91270 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.50 127.69 1.34 1.80 16 2 N -0.70 -14.30 6.66 -514.63 -3.43 -17.73 16 3 C 0.09 2.24 2.49 44.92 0.11 2.36 16 4 H 0.04 0.96 7.80 -2.39 -0.02 0.94 16 5 C -0.10 -2.21 5.42 30.59 0.17 -2.05 16 6 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 7 C -0.15 -4.89 4.45 30.59 0.14 -4.75 16 8 C 0.08 2.96 2.01 44.93 0.09 3.05 16 9 H 0.07 2.49 5.83 -2.39 -0.01 2.48 16 10 N -0.54 -23.14 4.57 -876.09 -4.01 -27.15 16 11 C 0.04 1.56 8.36 127.69 1.07 2.63 16 12 C 0.22 11.23 1.85 44.17 0.08 11.32 16 13 H -0.03 -1.79 6.62 -2.39 -0.02 -1.80 16 14 C -0.12 -6.05 8.77 71.98 0.63 -5.42 16 15 C -0.52 -28.99 7.93 25.60 0.20 -28.79 16 16 H 0.06 3.22 6.39 -2.91 -0.02 3.20 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 19 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.10 -2.75 4.41 30.62 0.13 -2.62 16 24 H 0.02 0.36 8.05 -2.39 -0.02 0.34 16 25 H 0.06 1.06 7.43 -2.39 -0.02 1.04 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.35 6.60 8.43 -89.69 -0.76 5.84 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.43 7.45 -2.38 -0.02 1.41 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.37 6.69 -2.39 -0.02 1.35 16 33 H 0.06 2.06 6.41 -2.39 -0.02 2.04 16 34 H 0.05 2.31 6.23 -2.38 -0.01 2.29 16 35 H 0.07 2.45 6.30 -2.39 -0.02 2.43 16 36 H 0.01 0.40 6.46 -2.39 -0.02 0.38 16 37 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 38 H 0.03 1.25 6.20 -2.39 -0.01 1.23 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 41 H 0.07 1.97 6.47 -2.39 -0.02 1.95 16 42 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 Total: -1.00 -60.02 306.82 -0.34 -60.36 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.23 Total: 15.86 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.59 Total: -24.06 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -7.19 Total: -98.34 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.02 -0.34 -60.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712702044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.303 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds