Wall clock time and date at job start Mon Mar 30 2020 03:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47271 * 2 1 4 4 C 1.50699 * 109.46995 * 239.99799 * 2 1 3 5 5 H 1.07998 * 120.00479 * 240.00556 * 4 2 1 6 6 C 1.37876 * 119.99815 * 60.00304 * 4 2 1 7 7 N 1.31517 * 120.00342 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47257 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.47384 * 209.99946 * 8 6 4 11 11 H 1.48504 * 109.47313 * 330.00064 * 8 6 4 12 12 N 1.46895 * 109.46917 * 120.00507 * 2 1 3 13 13 C 1.46902 * 111.00374 * 55.08026 * 12 2 1 14 14 C 1.46908 * 110.99950 * 291.12661 * 12 2 1 15 15 C 1.53004 * 109.47096 * 204.80293 * 14 12 2 16 16 N 1.46902 * 109.46926 * 54.24595 * 15 14 12 17 17 C 1.53002 * 109.47069 * 84.80129 * 14 12 2 18 18 C 1.52996 * 109.47112 * 179.97438 * 17 14 12 19 19 C 1.53011 * 109.46861 * 60.00132 * 18 17 14 20 20 C 1.52997 * 109.47218 * 300.00165 * 19 18 17 21 21 C 1.52995 * 109.47336 * 59.99440 * 20 19 18 22 22 H 1.09003 * 109.47582 * 195.91912 * 1 2 3 23 23 H 1.09004 * 109.47332 * 315.92179 * 1 2 3 24 24 H 1.09007 * 109.47102 * 75.91943 * 1 2 3 25 25 H 0.96996 * 120.00566 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.46888 * 56.13678 * 13 12 2 27 27 H 1.09004 * 109.46672 * 176.13715 * 13 12 2 28 28 H 1.09000 * 109.46871 * 296.13654 * 13 12 2 29 29 H 1.08998 * 109.46657 * 174.24408 * 15 14 12 30 30 H 1.08998 * 109.47277 * 294.24228 * 15 14 12 31 31 H 1.00896 * 111.00546 * 56.04017 * 16 15 14 32 32 H 1.00901 * 110.99403 * 180.02562 * 16 15 14 33 33 H 1.09003 * 109.46939 * 300.00278 * 17 14 12 34 34 H 1.09001 * 109.47013 * 60.00218 * 17 14 12 35 35 H 1.09000 * 109.47263 * 300.00470 * 18 17 14 36 36 H 1.09000 * 109.47444 * 180.02562 * 18 17 14 37 37 H 1.08999 * 109.46729 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46906 * 60.00120 * 19 18 17 39 39 H 1.09003 * 109.46643 * 299.99842 * 20 19 18 40 40 H 1.09001 * 109.47081 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.47042 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46926 * 60.00575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0196 -0.6926 1.1993 13 6 1.4549 -2.0455 1.2935 14 6 1.7290 0.0847 2.4116 15 6 2.7272 -0.2898 3.5090 16 7 4.0963 -0.1228 3.0033 17 6 0.3081 -0.2247 2.8874 18 6 0.0057 0.5843 4.1503 19 6 0.1259 2.0778 3.8401 20 6 1.5467 2.3872 3.3643 21 6 1.8492 1.5781 2.1015 22 1 -0.3634 -0.9882 0.2819 23 1 -0.3634 0.7383 0.7149 24 1 -0.3634 0.2500 -0.9968 25 1 0.7087 1.1613 -3.4844 26 1 1.6860 -2.5997 0.3839 27 1 1.8862 -2.5602 2.1521 28 1 0.3736 -1.9802 1.4144 29 1 2.5774 0.3580 4.3728 30 1 2.5723 -1.3281 3.8023 31 1 4.2449 0.8160 2.6650 32 1 4.7747 -0.3645 3.7100 33 1 -0.4030 0.0421 2.1055 34 1 0.2226 -1.2886 3.1087 35 1 0.7169 0.3172 4.9319 36 1 -1.0064 0.3636 4.4895 37 1 -0.0900 2.6542 4.7398 38 1 -0.5853 2.3449 3.0585 39 1 2.2578 2.1200 4.1460 40 1 1.6324 3.4512 3.1438 41 1 2.8612 1.7988 1.7623 42 1 1.1380 1.8452 1.3198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713344582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:53 Heat of formation + Delta-G solvation = 14.785693 kcal Electronic energy + Delta-G solvation = -19480.209923 eV Core-core repulsion = 16881.462916 eV Total energy + Delta-G solvation = -2598.747008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98313 -35.60786 -33.66049 -32.39886 -30.62484 -29.08602 -28.21499 -25.37494 -24.74048 -24.13434 -21.96199 -21.11310 -19.43178 -17.57572 -16.14292 -15.83927 -15.41296 -14.71914 -14.42197 -14.17181 -13.55213 -13.33306 -13.21462 -12.92854 -12.55002 -12.35850 -11.95877 -11.72674 -11.32220 -11.10787 -10.94031 -10.82696 -10.78054 -10.57032 -10.52519 -10.29769 -10.10133 -10.02401 -9.70294 -9.68864 -9.20168 -8.64693 -8.21208 -7.94398 -6.81213 -5.90320 -3.92574 3.36837 3.43378 3.48752 4.50160 4.85083 5.05083 5.05900 5.21593 5.36731 5.40741 5.54200 5.63420 5.72182 5.77720 5.86159 5.89221 5.99515 6.09943 6.19833 6.28820 6.32863 6.40380 6.46169 6.51555 6.58339 6.63725 6.73260 6.82651 6.90410 7.01278 7.06295 7.27443 7.61040 7.71488 7.87073 7.96931 8.00312 8.32129 8.58789 8.81092 9.15268 9.71616 11.15926 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.008001 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.167628 B = 3498.560711 C = 3730.230104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.205 3.795 3 H 0.048 0.952 4 C -0.489 4.489 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.503 5.503 13 C 0.033 3.967 14 C 0.121 3.879 15 C 0.082 3.918 16 N -0.826 5.826 17 C -0.162 4.162 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.118 4.118 22 H 0.028 0.972 23 H 0.017 0.983 24 H 0.086 0.914 25 H 0.258 0.742 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.337 0.663 32 H 0.324 0.676 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 1.173 12.839 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.721 3.279 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.224 5.224 13 C -0.115 4.115 14 C 0.030 3.970 15 C -0.050 4.050 16 N -0.355 5.355 17 C -0.201 4.201 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.155 4.155 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.086 0.672 12.095 12.114 hybrid contribution -0.608 0.315 -0.044 0.686 sum -0.694 0.988 12.051 12.111 Atomic orbital electron populations 1.22712 1.01538 0.97164 1.02531 1.19422 0.89230 0.95214 0.86272 0.93482 1.21193 1.29634 1.12192 0.89770 0.92112 1.24909 0.95533 0.95248 0.98843 1.69896 1.37516 1.23229 1.23091 0.86588 0.79267 0.79261 0.82815 1.21040 1.21480 1.19902 1.62428 1.57835 1.01167 1.00979 1.22282 0.96231 0.92199 1.00813 1.20882 0.91076 0.93298 0.91721 1.21820 0.89283 0.99360 0.94503 1.58417 1.02926 1.32793 1.41383 1.22707 0.99613 0.99552 0.98241 1.21539 1.00408 0.95282 0.98156 1.21510 0.97464 0.96173 1.00339 1.21627 0.96509 0.99502 0.98160 1.21845 1.02720 0.93909 0.97057 0.95309 0.96439 0.89569 0.93263 0.91348 0.94296 0.96206 0.96194 0.92354 0.84893 0.86511 0.89543 0.92146 0.92531 0.92932 0.92908 0.92057 0.92646 0.92479 0.91449 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.29 7.25 37.16 0.27 -4.02 16 2 C 0.20 5.04 1.80 -68.87 -0.12 4.92 16 3 H 0.05 1.27 5.68 -51.93 -0.30 0.97 16 4 C -0.49 -13.49 7.90 -34.44 -0.27 -13.77 16 5 H 0.06 1.72 7.04 -52.49 -0.37 1.35 16 6 C 0.05 1.52 5.22 -17.82 -0.09 1.42 16 7 N -0.90 -25.62 11.34 55.43 0.63 -24.99 16 8 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.50 -10.65 4.27 -220.61 -0.94 -11.60 16 13 C 0.03 0.67 7.67 60.07 0.46 1.13 16 14 C 0.12 2.11 0.22 -131.60 -0.03 2.08 16 15 C 0.08 1.26 5.01 -3.82 -0.02 1.24 16 16 N -0.83 -12.74 9.33 -10.37 -0.10 -12.84 16 17 C -0.16 -2.64 3.36 -26.73 -0.09 -2.73 16 18 C -0.12 -1.56 5.65 -26.73 -0.15 -1.71 16 19 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 20 C -0.12 -1.66 5.65 -26.74 -0.15 -1.81 16 21 C -0.12 -2.04 3.27 -26.74 -0.09 -2.13 16 22 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 23 H 0.02 0.38 4.87 -51.93 -0.25 0.12 16 24 H 0.09 2.32 5.82 -51.93 -0.30 2.02 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.50 6.68 -51.93 -0.35 1.16 16 27 H 0.04 0.71 7.28 -51.93 -0.38 0.33 16 28 H 0.02 0.39 4.36 -51.93 -0.23 0.16 16 29 H 0.02 0.28 4.83 -51.93 -0.25 0.03 16 30 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 31 H 0.34 5.16 7.28 -39.29 -0.29 4.87 16 32 H 0.32 4.12 9.08 -39.29 -0.36 3.76 16 33 H 0.09 1.58 4.27 -51.93 -0.22 1.35 16 34 H 0.06 0.98 6.42 -51.93 -0.33 0.64 16 35 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.71 6.30 -51.93 -0.33 0.39 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.22 6.63 -51.93 -0.34 0.88 16 42 H 0.08 1.62 5.04 -51.93 -0.26 1.35 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -28.28 286.57 -7.94 -36.23 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.39 Total: 9.24 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.44 Total: -17.08 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.41 Total: -49.43 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.28 -7.94 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713344582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.011 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds