Wall clock time and date at job start Mon Mar 30 2020 03:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47271 * 2 1 4 4 C 1.50699 * 109.46995 * 239.99799 * 2 1 3 5 5 H 1.07998 * 120.00479 * 240.00556 * 4 2 1 6 6 C 1.37876 * 119.99815 * 60.00304 * 4 2 1 7 7 N 1.31517 * 120.00342 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47257 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.47384 * 209.99946 * 8 6 4 11 11 H 1.48504 * 109.47313 * 330.00064 * 8 6 4 12 12 N 1.46895 * 109.46917 * 120.00507 * 2 1 3 13 13 C 1.46902 * 111.00374 * 55.08026 * 12 2 1 14 14 C 1.46908 * 110.99950 * 291.12661 * 12 2 1 15 15 C 1.53004 * 109.47096 * 204.80293 * 14 12 2 16 16 N 1.46902 * 109.46926 * 54.24595 * 15 14 12 17 17 C 1.53002 * 109.47069 * 84.80129 * 14 12 2 18 18 C 1.52996 * 109.47112 * 179.97438 * 17 14 12 19 19 C 1.53011 * 109.46861 * 60.00132 * 18 17 14 20 20 C 1.52997 * 109.47218 * 300.00165 * 19 18 17 21 21 C 1.52995 * 109.47336 * 59.99440 * 20 19 18 22 22 H 1.09003 * 109.47582 * 195.91912 * 1 2 3 23 23 H 1.09004 * 109.47332 * 315.92179 * 1 2 3 24 24 H 1.09007 * 109.47102 * 75.91943 * 1 2 3 25 25 H 0.96996 * 120.00566 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.46888 * 56.13678 * 13 12 2 27 27 H 1.09004 * 109.46672 * 176.13715 * 13 12 2 28 28 H 1.09000 * 109.46871 * 296.13654 * 13 12 2 29 29 H 1.08998 * 109.46657 * 174.24408 * 15 14 12 30 30 H 1.08998 * 109.47277 * 294.24228 * 15 14 12 31 31 H 1.00896 * 111.00546 * 56.04017 * 16 15 14 32 32 H 1.00901 * 110.99403 * 180.02562 * 16 15 14 33 33 H 1.09003 * 109.46939 * 300.00278 * 17 14 12 34 34 H 1.09001 * 109.47013 * 60.00218 * 17 14 12 35 35 H 1.09000 * 109.47263 * 300.00470 * 18 17 14 36 36 H 1.09000 * 109.47444 * 180.02562 * 18 17 14 37 37 H 1.08999 * 109.46729 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46906 * 60.00120 * 19 18 17 39 39 H 1.09003 * 109.46643 * 299.99842 * 20 19 18 40 40 H 1.09001 * 109.47081 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.47042 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46926 * 60.00575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0196 -0.6926 1.1993 13 6 1.4549 -2.0455 1.2935 14 6 1.7290 0.0847 2.4116 15 6 2.7272 -0.2898 3.5090 16 7 4.0963 -0.1228 3.0033 17 6 0.3081 -0.2247 2.8874 18 6 0.0057 0.5843 4.1503 19 6 0.1259 2.0778 3.8401 20 6 1.5467 2.3872 3.3643 21 6 1.8492 1.5781 2.1015 22 1 -0.3634 -0.9882 0.2819 23 1 -0.3634 0.7383 0.7149 24 1 -0.3634 0.2500 -0.9968 25 1 0.7087 1.1613 -3.4844 26 1 1.6860 -2.5997 0.3839 27 1 1.8862 -2.5602 2.1521 28 1 0.3736 -1.9802 1.4144 29 1 2.5774 0.3580 4.3728 30 1 2.5723 -1.3281 3.8023 31 1 4.2449 0.8160 2.6650 32 1 4.7747 -0.3645 3.7100 33 1 -0.4030 0.0421 2.1055 34 1 0.2226 -1.2886 3.1087 35 1 0.7169 0.3172 4.9319 36 1 -1.0064 0.3636 4.4895 37 1 -0.0900 2.6542 4.7398 38 1 -0.5853 2.3449 3.0585 39 1 2.2578 2.1200 4.1460 40 1 1.6324 3.4512 3.1438 41 1 2.8612 1.7988 1.7623 42 1 1.1380 1.8452 1.3198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713344582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:53 Heat of formation + Delta-G solvation = -4.937508 kcal Electronic energy + Delta-G solvation = -19481.065186 eV Core-core repulsion = 16881.462916 eV Total energy + Delta-G solvation = -2599.602270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40523 -37.18680 -35.01974 -34.23959 -31.96511 -30.66472 -29.80406 -27.32488 -26.43623 -25.45602 -23.27652 -22.53323 -21.03178 -19.00428 -18.08671 -17.34491 -16.78105 -16.52776 -15.78304 -15.69441 -15.10094 -14.74887 -14.52947 -14.36531 -13.93896 -13.87236 -13.63545 -13.12678 -12.92574 -12.72220 -12.61172 -12.49499 -12.43110 -12.26717 -12.05169 -12.00059 -11.75254 -11.59367 -11.13657 -11.08526 -10.70851 -10.61759 -10.27470 -9.13578 -8.48548 -8.03673 -6.12838 1.41507 1.42824 1.53518 2.46524 3.24218 3.44665 3.79847 3.87729 4.04504 4.12743 4.32584 4.40752 4.49687 4.54590 4.60811 4.66767 4.73062 4.76301 4.78636 4.91012 4.97732 4.99665 5.06262 5.15429 5.22231 5.26369 5.28308 5.32995 5.35046 5.42296 5.53973 5.58977 5.73149 5.83884 5.95422 6.35175 6.53070 6.69095 6.88253 7.03150 7.05737 7.55985 9.00856 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.008001 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.167628 B = 3498.560711 C = 3730.230104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.216 3.784 3 H 0.020 0.980 4 C -0.506 4.506 5 H 0.048 0.952 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.514 5.514 13 C 0.040 3.960 14 C 0.117 3.883 15 C 0.089 3.911 16 N -0.843 5.843 17 C -0.159 4.159 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.113 4.113 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.258 0.742 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.337 0.663 32 H 0.341 0.659 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 0.951 14.882 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.108 3.892 3 H 0.038 0.962 4 C -0.545 4.545 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.236 5.236 13 C -0.109 4.109 14 C 0.027 3.973 15 C -0.042 4.042 16 N -0.374 5.374 17 C -0.198 4.198 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.151 4.151 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.126 0.443 14.161 14.168 hybrid contribution -0.651 0.392 -0.654 1.002 sum -0.524 0.835 13.507 13.543 Atomic orbital electron populations 1.22490 1.01106 0.97666 1.00827 1.19095 0.89294 0.93682 0.87108 0.96243 1.21472 1.29593 1.12007 0.91410 0.93375 1.25607 0.95768 0.95944 1.01501 1.70022 1.38258 1.24248 1.23579 0.85658 0.78707 0.78298 0.79540 1.20423 1.21037 1.19792 1.62328 1.58115 1.01734 1.01427 1.22211 0.96564 0.91647 1.00465 1.21037 0.92778 0.92706 0.90767 1.21735 0.88542 0.99824 0.94080 1.58371 1.03534 1.32966 1.42528 1.22593 0.97900 1.00263 0.99053 1.21514 1.01796 0.94702 0.96767 1.21524 0.96377 0.96502 1.01020 1.21580 0.97549 0.99284 0.96613 1.21731 1.00729 0.94664 0.97950 0.94881 0.95078 0.92882 0.93298 0.93810 0.92078 0.95846 0.93651 0.92358 0.84952 0.84640 0.92061 0.91924 0.90802 0.91482 0.90111 0.93651 0.90787 0.91741 0.93005 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 7.25 71.98 0.52 -7.40 16 2 C 0.22 10.92 1.80 44.17 0.08 11.00 16 3 H 0.02 1.11 5.68 -2.39 -0.01 1.09 16 4 C -0.51 -28.67 7.90 25.60 0.20 -28.47 16 5 H 0.05 2.79 7.04 -2.91 -0.02 2.77 16 6 C 0.01 0.53 5.22 84.65 0.44 0.97 16 7 N -0.92 -53.94 11.34 21.45 0.24 -53.70 16 8 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.51 -21.89 4.27 -851.88 -3.64 -25.53 16 13 C 0.04 1.58 7.67 127.69 0.98 2.56 16 14 C 0.12 3.96 0.22 3.53 0.00 3.96 16 15 C 0.09 2.51 5.01 86.30 0.43 2.95 16 16 N -0.84 -24.46 9.33 -186.71 -1.74 -26.21 16 17 C -0.16 -4.91 3.36 30.59 0.10 -4.81 16 18 C -0.11 -2.59 5.65 30.60 0.17 -2.42 16 19 C -0.12 -2.75 5.92 30.60 0.18 -2.57 16 20 C -0.11 -2.86 5.65 30.59 0.17 -2.68 16 21 C -0.11 -3.89 3.27 30.59 0.10 -3.79 16 22 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 23 H 0.03 1.40 4.87 -2.38 -0.01 1.39 16 24 H 0.05 2.95 5.82 -2.38 -0.01 2.93 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.04 1.94 6.68 -2.39 -0.02 1.92 16 27 H 0.06 2.15 7.28 -2.38 -0.02 2.13 16 28 H 0.02 0.91 4.36 -2.39 -0.01 0.90 16 29 H 0.05 1.07 4.83 -2.39 -0.01 1.06 16 30 H 0.06 1.66 7.38 -2.39 -0.02 1.64 16 31 H 0.34 9.89 7.28 -89.70 -0.65 9.24 16 32 H 0.34 7.83 9.08 -89.69 -0.81 7.02 16 33 H 0.06 2.20 4.27 -2.39 -0.01 2.19 16 34 H 0.06 1.89 6.42 -2.39 -0.02 1.88 16 35 H 0.07 1.52 6.56 -2.39 -0.02 1.51 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.63 6.30 -2.39 -0.02 1.61 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.91 6.63 -2.39 -0.02 1.89 16 42 H 0.04 1.84 5.04 -2.39 -0.01 1.82 16 Total: -1.00 -61.74 286.57 -0.15 -61.89 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.42 Total: 26.91 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 3.39 Total: -30.68 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.14 Total: -105.43 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -61.74 -0.15 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713344582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -61.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds