Wall clock time and date at job start Mon Mar 30 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47119 * 119.99631 * 2 1 3 5 5 H 1.08000 * 119.99958 * 119.99776 * 4 2 1 6 6 C 1.37878 * 119.99872 * 300.00020 * 4 2 1 7 7 N 1.31510 * 119.99869 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00214 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47302 * 89.99559 * 8 6 4 10 10 H 1.48501 * 109.47067 * 209.99654 * 8 6 4 11 11 H 1.48501 * 109.46788 * 329.99296 * 8 6 4 12 12 N 1.46896 * 109.47336 * 239.99577 * 2 1 3 13 13 C 1.46897 * 111.00141 * 211.49032 * 12 2 1 14 14 C 1.46908 * 110.99653 * 87.54226 * 12 2 1 15 15 C 1.53007 * 109.46669 * 186.74536 * 14 12 2 16 16 N 1.46895 * 109.47237 * 58.04478 * 15 14 12 17 17 C 1.52991 * 109.47512 * 66.74148 * 14 12 2 18 18 C 1.52995 * 109.47396 * 180.02562 * 17 14 12 19 19 C 1.52997 * 109.47116 * 59.99948 * 18 17 14 20 20 C 1.53000 * 109.47172 * 300.00211 * 19 18 17 21 21 C 1.52995 * 109.47273 * 59.99885 * 20 19 18 22 22 H 1.09002 * 109.46794 * 174.06242 * 1 2 3 23 23 H 1.08995 * 109.47082 * 54.06633 * 1 2 3 24 24 H 1.09002 * 109.47226 * 294.06182 * 1 2 3 25 25 H 0.97001 * 120.00691 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47112 * 70.57155 * 13 12 2 27 27 H 1.08994 * 109.47039 * 190.57372 * 13 12 2 28 28 H 1.09005 * 109.47307 * 310.57424 * 13 12 2 29 29 H 1.08994 * 109.46625 * 178.04495 * 15 14 12 30 30 H 1.08999 * 109.46290 * 298.03988 * 15 14 12 31 31 H 1.00899 * 110.99911 * 56.04590 * 16 15 14 32 32 H 1.00900 * 110.99873 * 180.02562 * 16 15 14 33 33 H 1.08999 * 109.47275 * 300.00352 * 17 14 12 34 34 H 1.09007 * 109.46998 * 59.99667 * 17 14 12 35 35 H 1.09011 * 109.46801 * 300.00144 * 18 17 14 36 36 H 1.08999 * 109.47455 * 180.02562 * 18 17 14 37 37 H 1.09005 * 109.47068 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47526 * 60.00303 * 19 18 17 39 39 H 1.09011 * 109.47245 * 300.00110 * 20 19 18 40 40 H 1.09001 * 109.47492 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47455 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47126 * 59.99740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6926 -1.1993 13 6 3.2978 -1.3662 -0.9333 14 6 2.1398 0.2361 -2.3313 15 6 2.4884 -0.5471 -3.5986 16 7 1.4514 -1.5563 -3.8515 17 6 3.2441 1.2543 -2.0409 18 6 3.3687 2.2218 -3.2195 19 6 2.0404 2.9538 -3.4210 20 6 0.9359 1.9356 -3.7115 21 6 0.8114 0.9681 -2.5329 22 1 -0.3633 -1.0222 -0.1063 23 1 -0.3633 0.6031 -0.8321 24 1 -0.3634 0.4190 0.9384 25 1 1.9026 -0.5282 4.4376 26 1 3.1287 -2.2204 -0.2777 27 1 3.7300 -1.7094 -1.8732 28 1 3.9829 -0.6685 -0.4516 29 1 2.5434 0.1374 -4.4451 30 1 3.4515 -1.0405 -3.4672 31 1 0.5391 -1.1298 -3.9127 32 1 1.6592 -2.0876 -4.6837 33 1 2.9957 1.8121 -1.1380 34 1 4.1904 0.7327 -1.8968 35 1 3.6169 1.6641 -4.1227 36 1 4.1558 2.9469 -3.0128 37 1 2.1290 3.6428 -4.2610 38 1 1.7921 3.5114 -2.5180 39 1 1.1841 1.3779 -4.6146 40 1 -0.0104 2.4570 -3.8555 41 1 0.0242 0.2429 -2.7396 42 1 0.5632 1.5256 -1.6297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713344584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:55 Heat of formation + Delta-G solvation = 21.672654 kcal Electronic energy + Delta-G solvation = -19522.271793 eV Core-core repulsion = 16923.823426 eV Total energy + Delta-G solvation = -2598.448367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01099 -35.71838 -33.80524 -32.30444 -31.13565 -29.61213 -28.96499 -25.15191 -24.50851 -24.12423 -22.23362 -21.15460 -19.78290 -17.73529 -16.66751 -15.80557 -15.47969 -15.02286 -14.61988 -14.11973 -13.70948 -13.52830 -13.38885 -12.87836 -12.61191 -12.54246 -12.35032 -12.04245 -11.73148 -11.45648 -11.19794 -11.07521 -10.95853 -10.66662 -10.38580 -10.21969 -10.11359 -9.99805 -9.88029 -9.55537 -9.21014 -8.67560 -8.51812 -8.13898 -7.02719 -6.00755 -3.99132 3.30854 3.39827 3.42232 4.45120 4.66255 4.91909 4.93352 5.05650 5.19285 5.31894 5.38233 5.49982 5.58100 5.64459 5.71798 5.75452 5.87036 5.94998 6.05321 6.17259 6.22026 6.28511 6.41526 6.45323 6.49655 6.52138 6.60315 6.67275 6.71091 6.75450 6.90588 6.98500 7.16059 7.49980 7.55518 7.64959 7.80057 8.16638 8.32475 8.76066 9.05212 9.61964 11.11126 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.009371 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.671316 B = 2987.196498 C = 3321.004743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.176 3.824 3 H 0.005 0.995 4 C -0.519 4.519 5 H 0.090 0.910 6 C 0.070 3.930 7 N -0.902 5.902 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.301 1.301 11 H -0.270 1.270 12 N -0.500 5.500 13 C 0.048 3.952 14 C 0.119 3.881 15 C 0.076 3.924 16 N -0.829 5.829 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.117 4.117 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.262 0.738 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.337 0.663 32 H 0.327 0.673 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 5.488 -15.721 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.069 3.931 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.108 0.892 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.229 1.229 11 H -0.195 1.195 12 N -0.223 5.223 13 C -0.100 4.100 14 C 0.028 3.972 15 C -0.055 4.055 16 N -0.358 5.358 17 C -0.190 4.190 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.155 4.155 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.534 4.793 -14.927 15.687 hybrid contribution -0.181 1.985 -0.271 2.012 sum -0.716 6.778 -15.198 16.656 Atomic orbital electron populations 1.22496 0.98846 1.01251 0.98316 1.19730 0.91601 0.93208 0.88574 0.97753 1.21459 1.31879 1.13893 0.88417 0.89234 1.24966 0.95736 0.96524 0.95930 1.69887 1.45964 1.40344 0.97829 0.86875 0.80855 0.83916 0.76577 1.20655 1.22856 1.19484 1.62118 1.27305 1.28026 1.04810 1.22194 0.90255 0.99080 0.98475 1.20953 0.93429 0.90407 0.92407 1.21907 0.95499 0.92604 0.95470 1.58463 1.04903 1.28812 1.43647 1.22262 1.00068 0.98078 0.98613 1.21533 0.96890 0.98205 0.98730 1.21526 0.95357 0.97653 1.01092 1.21639 0.98219 0.97401 0.98638 1.21982 0.97521 0.97694 0.98304 0.92437 0.94046 0.94804 0.92791 0.91038 0.94268 0.95971 0.95822 0.91510 0.84949 0.86163 0.91094 0.91802 0.92274 0.92656 0.92700 0.92097 0.92488 0.92422 0.91056 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.36 37.16 0.31 -3.10 16 2 C 0.18 4.17 1.25 -68.86 -0.09 4.08 16 3 H 0.01 0.12 4.58 -51.93 -0.24 -0.11 16 4 C -0.52 -14.51 8.32 -34.44 -0.29 -14.79 16 5 H 0.09 2.68 5.38 -52.49 -0.28 2.40 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 8 Si 0.89 22.42 24.42 -169.99 -4.15 18.27 16 9 H -0.28 -6.94 6.82 56.52 0.39 -6.55 16 10 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 N -0.50 -10.24 4.28 -220.61 -0.94 -11.19 16 13 C 0.05 0.99 7.34 60.06 0.44 1.43 16 14 C 0.12 1.96 0.20 -131.60 -0.03 1.94 16 15 C 0.08 1.08 4.77 -3.82 -0.02 1.06 16 16 N -0.83 -11.33 9.41 -10.37 -0.10 -11.43 16 17 C -0.15 -2.45 4.10 -26.74 -0.11 -2.56 16 18 C -0.12 -1.50 5.65 -26.74 -0.15 -1.65 16 19 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 20 C -0.12 -1.50 5.65 -26.73 -0.15 -1.65 16 21 C -0.12 -1.82 2.85 -26.73 -0.08 -1.89 16 22 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.04 0.81 4.38 -51.93 -0.23 0.58 16 24 H 0.03 0.80 3.21 -51.93 -0.17 0.63 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.07 1.63 6.32 -51.93 -0.33 1.31 16 27 H 0.04 0.71 5.83 -51.93 -0.30 0.40 16 28 H 0.02 0.47 6.81 -51.93 -0.35 0.12 16 29 H 0.02 0.30 4.81 -51.93 -0.25 0.05 16 30 H 0.07 0.99 6.28 -51.93 -0.33 0.67 16 31 H 0.34 4.41 7.11 -39.29 -0.28 4.13 16 32 H 0.33 3.66 9.08 -39.29 -0.36 3.30 16 33 H 0.07 1.33 6.28 -51.93 -0.33 1.01 16 34 H 0.06 1.06 6.70 -51.92 -0.35 0.71 16 35 H 0.06 0.71 6.47 -51.92 -0.34 0.37 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.65 6.39 -51.92 -0.33 0.32 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.10 6.23 -51.93 -0.32 0.78 16 42 H 0.08 1.38 5.17 -51.93 -0.27 1.11 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -29.99 282.43 -6.91 -36.90 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.34 Total: 7.01 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.41 Total: -16.82 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.27 Total: -49.62 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.15 Total: 18.27 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.99 -6.91 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713344584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.577 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds