Wall clock time and date at job start Mon Mar 30 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47119 * 119.99631 * 2 1 3 5 5 H 1.08000 * 119.99958 * 119.99776 * 4 2 1 6 6 C 1.37878 * 119.99872 * 300.00020 * 4 2 1 7 7 N 1.31510 * 119.99869 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00214 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47302 * 89.99559 * 8 6 4 10 10 H 1.48501 * 109.47067 * 209.99654 * 8 6 4 11 11 H 1.48501 * 109.46788 * 329.99296 * 8 6 4 12 12 N 1.46896 * 109.47336 * 239.99577 * 2 1 3 13 13 C 1.46897 * 111.00141 * 211.49032 * 12 2 1 14 14 C 1.46908 * 110.99653 * 87.54226 * 12 2 1 15 15 C 1.53007 * 109.46669 * 186.74536 * 14 12 2 16 16 N 1.46895 * 109.47237 * 58.04478 * 15 14 12 17 17 C 1.52991 * 109.47512 * 66.74148 * 14 12 2 18 18 C 1.52995 * 109.47396 * 180.02562 * 17 14 12 19 19 C 1.52997 * 109.47116 * 59.99948 * 18 17 14 20 20 C 1.53000 * 109.47172 * 300.00211 * 19 18 17 21 21 C 1.52995 * 109.47273 * 59.99885 * 20 19 18 22 22 H 1.09002 * 109.46794 * 174.06242 * 1 2 3 23 23 H 1.08995 * 109.47082 * 54.06633 * 1 2 3 24 24 H 1.09002 * 109.47226 * 294.06182 * 1 2 3 25 25 H 0.97001 * 120.00691 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47112 * 70.57155 * 13 12 2 27 27 H 1.08994 * 109.47039 * 190.57372 * 13 12 2 28 28 H 1.09005 * 109.47307 * 310.57424 * 13 12 2 29 29 H 1.08994 * 109.46625 * 178.04495 * 15 14 12 30 30 H 1.08999 * 109.46290 * 298.03988 * 15 14 12 31 31 H 1.00899 * 110.99911 * 56.04590 * 16 15 14 32 32 H 1.00900 * 110.99873 * 180.02562 * 16 15 14 33 33 H 1.08999 * 109.47275 * 300.00352 * 17 14 12 34 34 H 1.09007 * 109.46998 * 59.99667 * 17 14 12 35 35 H 1.09011 * 109.46801 * 300.00144 * 18 17 14 36 36 H 1.08999 * 109.47455 * 180.02562 * 18 17 14 37 37 H 1.09005 * 109.47068 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47526 * 60.00303 * 19 18 17 39 39 H 1.09011 * 109.47245 * 300.00110 * 20 19 18 40 40 H 1.09001 * 109.47492 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47455 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47126 * 59.99740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6926 -1.1993 13 6 3.2978 -1.3662 -0.9333 14 6 2.1398 0.2361 -2.3313 15 6 2.4884 -0.5471 -3.5986 16 7 1.4514 -1.5563 -3.8515 17 6 3.2441 1.2543 -2.0409 18 6 3.3687 2.2218 -3.2195 19 6 2.0404 2.9538 -3.4210 20 6 0.9359 1.9356 -3.7115 21 6 0.8114 0.9681 -2.5329 22 1 -0.3633 -1.0222 -0.1063 23 1 -0.3633 0.6031 -0.8321 24 1 -0.3634 0.4190 0.9384 25 1 1.9026 -0.5282 4.4376 26 1 3.1287 -2.2204 -0.2777 27 1 3.7300 -1.7094 -1.8732 28 1 3.9829 -0.6685 -0.4516 29 1 2.5434 0.1374 -4.4451 30 1 3.4515 -1.0405 -3.4672 31 1 0.5391 -1.1298 -3.9127 32 1 1.6592 -2.0876 -4.6837 33 1 2.9957 1.8121 -1.1380 34 1 4.1904 0.7327 -1.8968 35 1 3.6169 1.6641 -4.1227 36 1 4.1558 2.9469 -3.0128 37 1 2.1290 3.6428 -4.2610 38 1 1.7921 3.5114 -2.5180 39 1 1.1841 1.3779 -4.6146 40 1 -0.0104 2.4570 -3.8555 41 1 0.0242 0.2429 -2.7396 42 1 0.5632 1.5256 -1.6297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713344584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:54 Heat of formation + Delta-G solvation = -1.430478 kcal Electronic energy + Delta-G solvation = -19523.273619 eV Core-core repulsion = 16923.823426 eV Total energy + Delta-G solvation = -2599.450194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.35031 -37.26690 -35.08825 -34.17939 -32.65500 -31.06973 -30.32703 -27.07703 -25.98973 -25.57731 -23.43136 -22.53488 -21.34567 -19.11890 -18.62559 -17.14379 -16.90697 -16.74286 -15.84226 -15.59226 -15.28705 -14.97365 -14.61196 -14.37598 -14.30108 -13.96324 -13.90179 -13.48369 -13.19391 -12.84470 -12.70140 -12.63160 -12.53804 -12.23629 -12.02741 -11.73140 -11.57593 -11.46683 -11.22812 -11.13936 -10.75341 -10.73427 -10.59084 -9.18042 -8.70765 -8.25948 -6.28278 1.27835 1.31636 1.41977 2.31669 3.07264 3.26480 3.73699 3.84314 3.99440 4.07549 4.25301 4.37269 4.41184 4.49721 4.52975 4.60206 4.63749 4.74421 4.76473 4.79318 4.85657 4.93751 5.00557 5.05095 5.12323 5.13247 5.20734 5.27228 5.29163 5.33332 5.40648 5.49180 5.53760 5.67209 5.75296 6.14123 6.49168 6.50892 6.80178 6.88348 6.92784 7.37269 8.88845 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.009371 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.671316 B = 2987.196498 C = 3321.004743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.184 3.816 3 H -0.003 1.003 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.302 1.302 11 H -0.253 1.253 12 N -0.505 5.505 13 C 0.060 3.940 14 C 0.114 3.886 15 C 0.084 3.916 16 N -0.843 5.843 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.117 4.117 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.002 0.998 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.342 0.658 32 H 0.343 0.657 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 7.165 -18.905 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 H 0.014 0.986 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.195 1.195 10 H -0.230 1.230 11 H -0.178 1.178 12 N -0.227 5.227 13 C -0.088 4.088 14 C 0.023 3.977 15 C -0.047 4.047 16 N -0.375 5.375 17 C -0.189 4.189 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.154 4.154 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.566 6.469 -18.152 19.333 hybrid contribution 0.222 1.377 0.677 1.551 sum -1.344 7.846 -17.474 19.202 Atomic orbital electron populations 1.22429 0.97519 1.01316 0.99134 1.19527 0.92521 0.92231 0.88176 0.98556 1.21806 1.30743 1.12859 0.90486 0.92594 1.25771 0.97358 0.99729 0.95617 1.70035 1.48074 1.42505 0.98428 0.85893 0.79413 0.80415 0.76853 1.19452 1.22993 1.17754 1.62098 1.26934 1.29074 1.04621 1.22004 0.90341 0.97493 0.98976 1.21162 0.94535 0.90261 0.91705 1.21787 0.95179 0.92922 0.94765 1.58396 1.05059 1.29044 1.45027 1.22202 0.99271 0.98455 0.98937 1.21510 0.97870 0.97742 0.97606 1.21551 0.94655 0.97899 1.01555 1.21600 0.99184 0.96788 0.97521 1.21931 0.96601 0.98072 0.98842 0.93332 0.90657 0.95916 0.92785 0.94308 0.91388 0.97906 0.93039 0.92285 0.84375 0.84347 0.94356 0.92898 0.90405 0.91919 0.89996 0.93558 0.90662 0.90788 0.90846 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 8.36 71.98 0.60 -5.86 16 2 C 0.18 8.74 1.25 44.17 0.06 8.80 16 3 H 0.00 -0.14 4.58 -2.39 -0.01 -0.16 16 4 C -0.52 -30.25 8.32 25.60 0.21 -30.04 16 5 H 0.06 3.56 5.38 -2.91 -0.02 3.55 16 6 C 0.01 0.72 5.45 84.66 0.46 1.18 16 7 N -0.95 -60.76 13.96 21.45 0.30 -60.47 16 8 Si 0.95 46.78 24.42 68.60 1.67 48.45 16 9 H -0.27 -12.71 6.82 99.48 0.68 -12.03 16 10 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 11 H -0.25 -11.73 6.53 99.48 0.65 -11.08 16 12 N -0.50 -20.62 4.28 -851.87 -3.65 -24.26 16 13 C 0.06 2.55 7.34 127.69 0.94 3.49 16 14 C 0.11 3.54 0.20 3.53 0.00 3.54 16 15 C 0.08 2.12 4.77 86.31 0.41 2.53 16 16 N -0.84 -20.49 9.41 -186.72 -1.76 -22.25 16 17 C -0.15 -4.67 4.10 30.59 0.13 -4.55 16 18 C -0.11 -2.48 5.65 30.59 0.17 -2.31 16 19 C -0.12 -2.47 5.92 30.59 0.18 -2.28 16 20 C -0.11 -2.30 5.65 30.59 0.17 -2.13 16 21 C -0.12 -3.28 2.85 30.59 0.09 -3.20 16 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.07 2.79 4.38 -2.39 -0.01 2.78 16 24 H 0.02 1.04 3.21 -2.39 -0.01 1.03 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.04 1.87 6.32 -2.39 -0.02 1.85 16 27 H 0.07 2.44 5.83 -2.39 -0.01 2.43 16 28 H 0.00 0.11 6.81 -2.38 -0.02 0.09 16 29 H 0.05 1.04 4.81 -2.39 -0.01 1.03 16 30 H 0.06 1.59 6.28 -2.39 -0.02 1.57 16 31 H 0.34 7.78 7.11 -89.69 -0.64 7.14 16 32 H 0.34 6.53 9.08 -89.69 -0.81 5.71 16 33 H 0.04 1.44 6.28 -2.39 -0.01 1.42 16 34 H 0.05 1.73 6.70 -2.38 -0.02 1.72 16 35 H 0.08 1.50 6.47 -2.38 -0.02 1.49 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.29 6.39 -2.38 -0.02 1.28 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 2.03 6.23 -2.39 -0.01 2.02 16 42 H 0.05 1.76 5.17 -2.39 -0.01 1.75 16 Total: -1.00 -67.18 282.43 -0.50 -67.67 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.49 Total: 21.67 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 3.42 Total: -30.82 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -5.10 Total: -106.98 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -67.18 -0.50 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713344584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.242 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds