Wall clock time and date at job start Mon Mar 30 2020 03:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46503 * 2 1 4 4 C 1.53002 * 109.46932 * 240.00287 * 2 1 3 5 5 N 1.46892 * 109.47183 * 184.99625 * 4 2 1 6 6 C 1.46899 * 111.00203 * 169.99962 * 5 4 2 7 7 C 1.46907 * 111.00028 * 293.95665 * 5 4 2 8 8 N 1.46495 * 109.47337 * 120.00218 * 2 1 3 9 9 C 1.36930 * 120.00132 * 65.68767 * 8 2 1 10 10 H 1.08000 * 120.00706 * 121.67016 * 9 8 2 11 11 C 1.38814 * 119.99894 * 301.94773 * 9 8 2 12 12 N 1.31620 * 120.00012 * 324.64610 * 11 9 8 13 13 Si 1.86804 * 120.00325 * 144.65323 * 11 9 8 14 14 H 1.48496 * 109.46670 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47342 * 119.99878 * 13 11 9 16 16 H 1.48504 * 109.46743 * 239.99784 * 13 11 9 17 17 C 1.46503 * 119.99813 * 245.68467 * 8 2 1 18 18 C 1.54266 * 110.03193 * 237.55607 * 17 8 2 19 19 C 1.54887 * 104.19875 * 217.10921 * 18 17 8 20 20 C 1.54883 * 102.74834 * 37.94159 * 19 18 17 21 21 C 1.53877 * 110.03213 * 120.39108 * 17 8 2 22 22 H 1.09000 * 109.46696 * 170.86747 * 1 2 3 23 23 H 1.09003 * 109.46853 * 290.86123 * 1 2 3 24 24 H 1.08993 * 109.47629 * 50.86362 * 1 2 3 25 25 H 1.08999 * 109.47259 * 305.00088 * 4 2 1 26 26 H 1.09004 * 109.47185 * 64.99703 * 4 2 1 27 27 H 1.09008 * 109.46728 * 60.00390 * 6 5 4 28 28 H 1.09003 * 109.47309 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46993 * 300.00424 * 6 5 4 30 30 H 1.08996 * 109.47270 * 60.00064 * 7 5 4 31 31 H 1.09002 * 109.47248 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.47077 * 299.99596 * 7 5 4 33 33 H 0.96999 * 120.00723 * 185.24851 * 12 11 9 34 34 H 1.08996 * 110.01508 * 358.99851 * 17 8 2 35 35 H 1.09001 * 110.48663 * 335.78698 * 18 17 8 36 36 H 1.09004 * 110.48892 * 98.42457 * 18 17 8 37 37 H 1.09007 * 110.75168 * 279.62975 * 19 18 17 38 38 H 1.08997 * 110.75794 * 156.25895 * 19 18 17 39 39 H 1.09007 * 110.48628 * 203.38500 * 20 19 18 40 40 H 1.08998 * 110.60164 * 80.79530 * 20 19 18 41 41 H 1.08998 * 110.03121 * 238.56630 * 21 17 8 42 42 H 1.09002 * 110.02727 * 0.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.0107 -1.7142 -2.2457 7 6 4.1309 0.4995 -1.2721 8 7 2.0184 -0.6906 1.1961 9 6 1.7864 -2.0306 1.3557 10 1 2.6158 -2.7119 1.4752 11 6 0.4852 -2.5143 1.3580 12 7 -0.4825 -1.7970 1.8886 13 14 0.1076 -4.1831 0.6084 14 1 1.3594 -4.7839 0.0821 15 1 -0.4706 -5.0730 1.6471 16 1 -0.8664 -4.0186 -0.5005 17 6 2.7551 0.0525 2.2215 18 6 4.1453 -0.5808 2.4365 19 6 4.3899 -0.4516 3.9605 20 6 2.9860 -0.7219 4.5562 21 6 2.0180 -0.0372 3.5692 22 1 -0.3633 -1.0147 -0.1631 23 1 -0.3633 0.3660 0.9603 24 1 -0.3634 0.6486 -0.7970 25 1 1.6054 -1.7197 -1.2953 26 1 1.7516 -0.1582 -2.1370 27 1 3.7276 -1.3178 -3.2209 28 1 5.0970 -1.7747 -2.1790 29 1 3.5833 -2.7090 -2.1198 30 1 3.7911 1.1139 -0.4385 31 1 5.2147 0.3925 -1.2259 32 1 3.8523 0.9760 -2.2121 33 1 -1.3769 -2.1657 1.9591 34 1 2.8612 1.0952 1.9225 35 1 4.1370 -1.6294 2.1391 36 1 4.9049 -0.0315 1.8802 37 1 4.7300 0.5527 4.2133 38 1 5.1050 -1.2001 4.3018 39 1 2.8995 -0.2755 5.5469 40 1 2.7889 -1.7929 4.6028 41 1 1.7672 0.9621 3.9248 42 1 1.1124 -0.6340 3.4604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713995606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:54 Heat of formation + Delta-G solvation = 28.076038 kcal Electronic energy + Delta-G solvation = -19423.774206 eV Core-core repulsion = 16825.603511 eV Total energy + Delta-G solvation = -2598.170695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.95430 -36.54527 -34.25828 -31.31133 -29.70663 -27.50500 -27.06362 -26.24286 -25.71388 -23.43433 -21.49352 -19.72603 -19.27926 -18.74033 -15.94548 -15.28281 -14.84559 -14.48778 -14.34235 -14.14874 -14.03826 -13.31350 -12.50061 -12.33288 -12.07743 -11.91316 -11.63718 -11.56008 -11.21237 -11.05493 -10.92973 -10.75738 -10.65251 -10.33344 -10.13009 -10.05257 -10.00769 -9.86096 -9.82610 -9.47089 -9.34228 -9.17549 -7.87443 -7.50155 -6.17465 -5.50383 -3.29621 3.35916 3.48697 3.54569 4.54983 4.71429 5.27804 5.47221 5.68580 5.72385 5.74163 5.75829 5.88047 5.90950 5.99900 6.18814 6.30499 6.35335 6.40374 6.43547 6.48846 6.49633 6.59531 6.73946 6.81607 6.82490 6.88195 6.93189 6.97683 7.06683 7.23274 7.34842 7.44222 7.53790 7.76808 7.82683 7.92929 7.98045 8.10621 8.94373 9.44456 9.96527 10.77606 11.21885 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.014153 C = 0.009512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.749018 B = 1977.846347 C = 2942.922647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.188 3.812 3 H 0.034 0.966 4 C 0.059 3.941 5 N -0.515 5.515 6 C 0.030 3.970 7 C 0.032 3.968 8 N -0.558 5.558 9 C -0.256 4.256 10 H 0.046 0.954 11 C 0.049 3.951 12 N -0.853 5.853 13 Si 0.857 3.143 14 H -0.273 1.273 15 H -0.292 1.292 16 H -0.289 1.289 17 C 0.183 3.817 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.138 4.138 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.003 0.997 25 H 0.074 0.926 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.251 0.749 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 3.800 -2.803 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 H 0.052 0.948 4 C -0.071 4.071 5 N -0.237 5.237 6 C -0.119 4.119 7 C -0.117 4.117 8 N -0.278 5.278 9 C -0.386 4.386 10 H 0.063 0.937 11 C -0.154 4.154 12 N -0.491 5.491 13 Si 0.686 3.314 14 H -0.198 1.198 15 H -0.219 1.219 16 H -0.216 1.216 17 C 0.076 3.924 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.177 4.177 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.022 0.978 25 H 0.093 0.907 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.020 3.622 -2.384 7.419 hybrid contribution -0.607 -0.615 -1.245 1.515 sum 5.414 3.007 -3.628 7.177 Atomic orbital electron populations 1.22351 0.97121 1.01200 0.99525 1.20385 0.92560 0.92454 0.86568 0.94785 1.22537 0.86221 1.01492 0.96807 1.61782 1.06558 1.10120 1.45273 1.22314 0.99810 0.97936 0.91795 1.22324 0.98809 0.91328 0.99257 1.43473 1.63775 1.05628 1.14972 1.18292 0.89176 0.82602 1.48545 0.93655 1.25395 0.97797 0.95402 0.96856 1.70267 1.02113 1.37298 1.39430 0.87020 0.78175 0.86247 0.79987 1.19812 1.21914 1.21554 1.20940 0.90123 0.92240 0.89114 1.22675 0.97923 1.02609 0.92946 1.22456 0.96904 0.99174 0.97773 1.22212 0.95186 1.00652 0.97113 1.22730 1.01353 0.98383 0.95265 0.91810 0.91319 0.97802 0.90736 0.97516 0.97252 0.92501 0.91723 0.91370 0.92708 0.97341 0.93829 0.94982 0.90517 0.94219 0.93297 0.93442 0.94238 0.92129 0.95350 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 7.69 37.16 0.29 -2.92 16 2 C 0.19 4.04 2.54 -67.93 -0.17 3.87 16 3 H 0.03 0.70 6.23 -51.93 -0.32 0.38 16 4 C 0.06 1.18 4.10 -3.83 -0.02 1.16 16 5 N -0.51 -9.56 4.74 -251.25 -1.19 -10.75 16 6 C 0.03 0.49 9.57 60.06 0.57 1.06 16 7 C 0.03 0.51 9.32 60.07 0.56 1.07 16 8 N -0.56 -12.78 2.00 -156.88 -0.31 -13.09 16 9 C -0.26 -6.49 6.51 -15.06 -0.10 -6.59 16 10 H 0.05 1.25 6.96 -52.49 -0.37 0.89 16 11 C 0.05 1.27 3.55 -17.43 -0.06 1.21 16 12 N -0.85 -22.60 9.84 55.49 0.55 -22.06 16 13 Si 0.86 20.55 29.67 -169.99 -5.04 15.51 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 C 0.18 3.88 3.44 -66.81 -0.23 3.65 16 18 C -0.12 -2.39 6.41 -25.07 -0.16 -2.55 16 19 C -0.13 -2.19 6.91 -24.74 -0.17 -2.36 16 20 C -0.11 -2.17 6.83 -25.07 -0.17 -2.34 16 21 C -0.14 -2.96 6.28 -25.61 -0.16 -3.12 16 22 H 0.06 1.57 5.72 -51.93 -0.30 1.27 16 23 H 0.07 1.69 7.38 -51.93 -0.38 1.31 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 26 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 27 H 0.01 0.14 8.14 -51.92 -0.42 -0.29 16 28 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 30 H 0.07 1.15 6.58 -51.93 -0.34 0.81 16 31 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 32 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.25 6.56 8.32 -40.82 -0.34 6.22 16 34 H 0.03 0.66 7.59 -51.93 -0.39 0.27 16 35 H 0.08 1.70 6.41 -51.93 -0.33 1.37 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 2.72 6.40 -51.93 -0.33 2.38 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -25.58 315.71 -8.86 -34.44 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.79 Total: -0.94 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.18 Total: -7.87 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.96 Total: -45.90 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.04 Total: 15.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.58 -8.86 -34.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713995606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.513 kcal (2) G-P(sol) polarization free energy of solvation -25.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds