Wall clock time and date at job start Mon Mar 30 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47249 * 119.99966 * 2 1 3 5 5 N 1.46893 * 109.47666 * 175.00290 * 4 2 1 6 6 C 1.46897 * 111.00029 * 66.04028 * 5 4 2 7 7 C 1.46890 * 111.00405 * 189.99927 * 5 4 2 8 8 N 1.46503 * 109.47288 * 240.00052 * 2 1 3 9 9 C 1.36928 * 120.00081 * 114.95867 * 8 2 1 10 10 H 1.08004 * 119.99981 * 150.17868 * 9 8 2 11 11 C 1.38814 * 120.00433 * 330.17677 * 9 8 2 12 12 N 1.31618 * 119.99572 * 344.71678 * 11 9 8 13 13 Si 1.86799 * 120.00359 * 164.71566 * 11 9 8 14 14 H 1.48502 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46918 * 120.00210 * 13 11 9 16 16 H 1.48496 * 109.47100 * 240.00093 * 13 11 9 17 17 C 1.46503 * 119.99767 * 294.95922 * 8 2 1 18 18 C 1.54888 * 110.75826 * 125.48563 * 17 8 2 19 19 C 1.54259 * 104.31427 * 156.32218 * 18 17 8 20 20 C 1.53879 * 106.60017 * 336.32514 * 19 18 17 21 21 C 1.54269 * 106.59497 * 359.97438 * 20 19 18 22 22 H 1.08989 * 109.46937 * 300.00101 * 1 2 3 23 23 H 1.08997 * 109.46713 * 60.00640 * 1 2 3 24 24 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46596 * 295.00453 * 4 2 1 26 26 H 1.08998 * 109.46952 * 54.99550 * 4 2 1 27 27 H 1.09006 * 109.46965 * 60.00805 * 6 5 4 28 28 H 1.08996 * 109.47329 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.47599 * 300.00673 * 6 5 4 30 30 H 1.09010 * 109.47328 * 60.00002 * 7 5 4 31 31 H 1.09002 * 109.47375 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.47117 * 299.99795 * 7 5 4 33 33 H 0.97002 * 119.99759 * 179.97438 * 12 11 9 34 34 H 1.09005 * 110.81494 * 2.14794 * 17 8 2 35 35 H 1.09002 * 110.48237 * 37.57197 * 18 17 8 36 36 H 1.08995 * 110.48428 * 275.07331 * 18 17 8 37 37 H 1.09002 * 110.03174 * 95.61015 * 19 18 17 38 38 H 1.09002 * 110.03074 * 217.04060 * 19 18 17 39 39 H 1.08996 * 110.03164 * 119.28639 * 20 19 18 40 40 H 1.09001 * 110.02855 * 240.66963 * 20 19 18 41 41 H 1.09002 * 110.48078 * 142.28556 * 21 20 19 42 42 H 1.09001 * 110.48837 * 264.79690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1905 6 6 4.1310 0.4993 1.2720 7 6 4.0107 -1.7143 2.2455 8 7 2.0184 -0.6906 -1.1962 9 6 2.7184 0.0011 -2.1483 10 1 3.4649 -0.5042 -2.7432 11 6 2.4687 1.3518 -2.3490 12 7 1.3775 1.8993 -1.8571 13 14 3.6811 2.3922 -3.3170 14 1 4.8183 1.5452 -3.7581 15 1 3.0013 2.9673 -4.5053 16 1 4.1877 3.4911 -2.4564 17 6 1.7578 -2.1213 -1.3737 18 6 1.0621 -2.3883 -2.7315 19 6 1.3996 -3.8594 -3.0503 20 6 2.6864 -4.1930 -2.2752 21 6 3.0863 -2.9128 -1.5130 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -0.1583 2.1369 26 1 1.6054 -1.7197 1.2952 27 1 3.8524 0.9758 2.2120 28 1 5.2147 0.3923 1.2258 29 1 3.7911 1.1139 0.4385 30 1 3.5834 -2.7092 2.1197 31 1 5.0970 -1.7748 2.1789 32 1 3.7278 -1.3180 3.2207 33 1 1.2031 2.8432 -1.9970 34 1 1.1598 -2.5112 -0.5499 35 1 1.4631 -1.7293 -3.5016 36 1 -0.0158 -2.2552 -2.6405 37 1 0.5875 -4.5082 -2.7225 38 1 1.5664 -3.9807 -4.1206 39 1 2.4987 -5.0038 -1.5714 40 1 3.4773 -4.4771 -2.9694 41 1 3.4853 -3.1630 -0.5300 42 1 3.8160 -2.3401 -2.0855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713995608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:56 Heat of formation + Delta-G solvation = 18.782704 kcal Electronic energy + Delta-G solvation = -19350.070334 eV Core-core repulsion = 16751.496649 eV Total energy + Delta-G solvation = -2598.573684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.05954 -36.53440 -34.28116 -31.37343 -29.67018 -27.72278 -27.00737 -26.22297 -25.87861 -23.41007 -21.50332 -19.80584 -19.37400 -18.80329 -16.18099 -15.35096 -14.88592 -14.55477 -14.38344 -13.95003 -13.75242 -13.46009 -12.71891 -12.41162 -11.95037 -11.88608 -11.71289 -11.61822 -11.11966 -10.97993 -10.87918 -10.76704 -10.66582 -10.64030 -10.41542 -10.18535 -10.06815 -9.86543 -9.82078 -9.63579 -9.29158 -9.05963 -8.26524 -7.50433 -6.37512 -5.63899 -3.03996 3.43085 3.52607 3.54765 4.59791 4.72340 5.41050 5.45038 5.52803 5.62270 5.66258 5.76680 5.80563 5.95414 6.07675 6.20751 6.21570 6.30251 6.33100 6.35101 6.39843 6.51682 6.58143 6.62499 6.69618 6.72266 6.74952 6.82261 6.93013 7.00820 7.02284 7.21963 7.35827 7.45781 7.63108 7.71049 7.90015 7.94905 8.02755 8.66820 9.42362 10.06496 10.60714 11.43378 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.012675 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.747296 B = 2208.499759 C = 2988.431343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.191 3.809 3 H 0.100 0.900 4 C 0.039 3.961 5 N -0.515 5.515 6 C 0.032 3.968 7 C 0.027 3.973 8 N -0.558 5.558 9 C -0.218 4.218 10 H 0.062 0.938 11 C -0.002 4.002 12 N -0.904 5.904 13 Si 0.890 3.110 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.293 1.293 17 C 0.185 3.815 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.126 4.126 22 H 0.023 0.977 23 H 0.080 0.920 24 H 0.020 0.980 25 H 0.013 0.987 26 H 0.055 0.945 27 H 0.007 0.993 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.010 0.990 33 H 0.248 0.752 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -7.002 4.776 8.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.084 3.916 3 H 0.118 0.882 4 C -0.090 4.090 5 N -0.238 5.238 6 C -0.117 4.117 7 C -0.122 4.122 8 N -0.276 5.276 9 C -0.348 4.348 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.551 5.551 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.220 1.220 17 C 0.076 3.924 18 C -0.173 4.173 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.166 4.166 22 H 0.042 0.958 23 H 0.099 0.901 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.582 -7.022 4.310 8.390 hybrid contribution 0.381 0.907 0.325 1.036 sum 1.962 -6.115 4.635 7.920 Atomic orbital electron populations 1.22148 0.98666 0.98351 1.01198 1.20281 0.91094 0.97449 0.82786 0.88237 1.22904 0.87036 1.00012 0.99060 1.61804 1.06065 1.11288 1.44667 1.22346 0.98529 0.90729 1.00066 1.22353 1.00050 0.97511 0.92247 1.43574 1.62754 1.02865 1.18382 1.19022 1.11897 0.91612 1.12310 0.92024 1.24943 0.96477 0.98611 0.99897 1.69996 1.23831 1.11490 1.49744 0.86387 0.81252 0.80658 0.79534 1.20475 1.22192 1.22009 1.21129 0.92300 0.85561 0.93399 1.22761 0.99409 0.93905 1.01219 1.22073 0.96959 0.98091 0.98926 1.22095 0.97088 0.98495 0.98488 1.22730 1.00459 0.94600 0.98816 0.95824 0.90125 0.96050 0.96873 0.92667 0.97503 0.92861 0.89601 0.92286 0.92377 0.97197 0.94151 0.93306 0.90622 0.93581 0.93375 0.93233 0.93392 0.93308 0.92904 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.04 37.16 0.34 -2.78 16 2 C 0.19 4.27 1.49 -67.93 -0.10 4.16 16 3 H 0.10 2.53 4.62 -51.93 -0.24 2.29 16 4 C 0.04 0.76 4.15 -3.83 -0.02 0.74 16 5 N -0.52 -9.61 4.74 -251.27 -1.19 -10.80 16 6 C 0.03 0.58 9.32 60.06 0.56 1.14 16 7 C 0.03 0.42 9.57 60.06 0.57 0.99 16 8 N -0.56 -12.87 2.17 -155.67 -0.34 -13.21 16 9 C -0.22 -5.59 7.95 -15.06 -0.12 -5.71 16 10 H 0.06 1.64 6.66 -52.48 -0.35 1.29 16 11 C 0.00 -0.06 4.92 -17.43 -0.09 -0.15 16 12 N -0.90 -24.66 9.93 55.49 0.55 -24.11 16 13 Si 0.89 21.41 29.58 -169.99 -5.03 16.39 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.18 3.78 2.55 -65.74 -0.17 3.61 16 18 C -0.13 -2.66 6.34 -25.08 -0.16 -2.82 16 19 C -0.12 -2.02 6.80 -25.61 -0.17 -2.20 16 20 C -0.12 -2.00 6.80 -25.61 -0.17 -2.18 16 21 C -0.13 -2.40 6.39 -24.87 -0.16 -2.55 16 22 H 0.02 0.46 8.14 -51.94 -0.42 0.04 16 23 H 0.08 1.98 7.06 -51.93 -0.37 1.62 16 24 H 0.02 0.42 7.34 -51.93 -0.38 0.04 16 25 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 26 H 0.05 1.04 6.96 -51.93 -0.36 0.68 16 27 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 30 H 0.06 0.86 8.12 -51.92 -0.42 0.44 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.05 0.99 6.28 -51.93 -0.33 0.67 16 35 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.43 6.58 -51.93 -0.34 1.09 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -26.11 316.33 -8.63 -34.74 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.70 Total: -0.05 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.31 Total: -7.72 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.98 Total: -48.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.11 -8.63 -34.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713995608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.524 kcal (2) G-P(sol) polarization free energy of solvation -26.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds