Wall clock time and date at job start Mon Mar 30 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47249 * 119.99966 * 2 1 3 5 5 N 1.46893 * 109.47666 * 175.00290 * 4 2 1 6 6 C 1.46897 * 111.00029 * 66.04028 * 5 4 2 7 7 C 1.46890 * 111.00405 * 189.99927 * 5 4 2 8 8 N 1.46503 * 109.47288 * 240.00052 * 2 1 3 9 9 C 1.36928 * 120.00081 * 114.95867 * 8 2 1 10 10 H 1.08004 * 119.99981 * 150.17868 * 9 8 2 11 11 C 1.38814 * 120.00433 * 330.17677 * 9 8 2 12 12 N 1.31618 * 119.99572 * 344.71678 * 11 9 8 13 13 Si 1.86799 * 120.00359 * 164.71566 * 11 9 8 14 14 H 1.48502 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46918 * 120.00210 * 13 11 9 16 16 H 1.48496 * 109.47100 * 240.00093 * 13 11 9 17 17 C 1.46503 * 119.99767 * 294.95922 * 8 2 1 18 18 C 1.54888 * 110.75826 * 125.48563 * 17 8 2 19 19 C 1.54259 * 104.31427 * 156.32218 * 18 17 8 20 20 C 1.53879 * 106.60017 * 336.32514 * 19 18 17 21 21 C 1.54269 * 106.59497 * 359.97438 * 20 19 18 22 22 H 1.08989 * 109.46937 * 300.00101 * 1 2 3 23 23 H 1.08997 * 109.46713 * 60.00640 * 1 2 3 24 24 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46596 * 295.00453 * 4 2 1 26 26 H 1.08998 * 109.46952 * 54.99550 * 4 2 1 27 27 H 1.09006 * 109.46965 * 60.00805 * 6 5 4 28 28 H 1.08996 * 109.47329 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.47599 * 300.00673 * 6 5 4 30 30 H 1.09010 * 109.47328 * 60.00002 * 7 5 4 31 31 H 1.09002 * 109.47375 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.47117 * 299.99795 * 7 5 4 33 33 H 0.97002 * 119.99759 * 179.97438 * 12 11 9 34 34 H 1.09005 * 110.81494 * 2.14794 * 17 8 2 35 35 H 1.09002 * 110.48237 * 37.57197 * 18 17 8 36 36 H 1.08995 * 110.48428 * 275.07331 * 18 17 8 37 37 H 1.09002 * 110.03174 * 95.61015 * 19 18 17 38 38 H 1.09002 * 110.03074 * 217.04060 * 19 18 17 39 39 H 1.08996 * 110.03164 * 119.28639 * 20 19 18 40 40 H 1.09001 * 110.02855 * 240.66963 * 20 19 18 41 41 H 1.09002 * 110.48078 * 142.28556 * 21 20 19 42 42 H 1.09001 * 110.48837 * 264.79690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1905 6 6 4.1310 0.4993 1.2720 7 6 4.0107 -1.7143 2.2455 8 7 2.0184 -0.6906 -1.1962 9 6 2.7184 0.0011 -2.1483 10 1 3.4649 -0.5042 -2.7432 11 6 2.4687 1.3518 -2.3490 12 7 1.3775 1.8993 -1.8571 13 14 3.6811 2.3922 -3.3170 14 1 4.8183 1.5452 -3.7581 15 1 3.0013 2.9673 -4.5053 16 1 4.1877 3.4911 -2.4564 17 6 1.7578 -2.1213 -1.3737 18 6 1.0621 -2.3883 -2.7315 19 6 1.3996 -3.8594 -3.0503 20 6 2.6864 -4.1930 -2.2752 21 6 3.0863 -2.9128 -1.5130 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -0.1583 2.1369 26 1 1.6054 -1.7197 1.2952 27 1 3.8524 0.9758 2.2120 28 1 5.2147 0.3923 1.2258 29 1 3.7911 1.1139 0.4385 30 1 3.5834 -2.7092 2.1197 31 1 5.0970 -1.7748 2.1789 32 1 3.7278 -1.3180 3.2207 33 1 1.2031 2.8432 -1.9970 34 1 1.1598 -2.5112 -0.5499 35 1 1.4631 -1.7293 -3.5016 36 1 -0.0158 -2.2552 -2.6405 37 1 0.5875 -4.5082 -2.7225 38 1 1.5664 -3.9807 -4.1206 39 1 2.4987 -5.0038 -1.5714 40 1 3.4773 -4.4771 -2.9694 41 1 3.4853 -3.1630 -0.5300 42 1 3.8160 -2.3401 -2.0855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713995608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:56 Heat of formation + Delta-G solvation = 4.817681 kcal Electronic energy + Delta-G solvation = -19350.675902 eV Core-core repulsion = 16751.496649 eV Total energy + Delta-G solvation = -2599.179253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68453 -38.00229 -35.95277 -33.27545 -31.39206 -29.22637 -28.41200 -27.86671 -27.44630 -25.28476 -23.01060 -21.43304 -20.77152 -20.60075 -17.96988 -17.04123 -16.53938 -16.14217 -15.84866 -15.65456 -15.30733 -15.03771 -14.30835 -13.95332 -13.62959 -13.55185 -13.18411 -13.09609 -12.86791 -12.62438 -12.53424 -12.46085 -12.41756 -12.28153 -11.94982 -11.81517 -11.66073 -11.60971 -11.47650 -11.07945 -11.04030 -10.80184 -10.24045 -8.92882 -8.27154 -7.64917 -5.04809 1.46708 1.52125 1.58914 2.63185 3.28905 3.47393 3.77992 4.12577 4.15355 4.24500 4.39692 4.42558 4.57408 4.65663 4.73719 4.80115 4.86308 4.89972 4.92691 4.99317 5.03279 5.03876 5.07093 5.08809 5.16736 5.22079 5.27946 5.33541 5.36749 5.43049 5.69434 5.76992 5.80510 5.87133 5.88841 6.04454 6.37918 6.47550 6.68275 7.43518 8.19494 8.65169 9.39165 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.012675 C = 0.009367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.747296 B = 2208.499759 C = 2988.431343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H 0.066 0.934 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.040 3.960 7 C 0.031 3.969 8 N -0.566 5.566 9 C -0.206 4.206 10 H 0.050 0.950 11 C -0.045 4.045 12 N -0.924 5.924 13 Si 0.937 3.063 14 H -0.276 1.276 15 H -0.302 1.302 16 H -0.297 1.297 17 C 0.179 3.821 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.117 4.117 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.021 0.979 33 H 0.240 0.760 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -9.251 5.813 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 H 0.084 0.916 4 C -0.077 4.077 5 N -0.257 5.257 6 C -0.109 4.109 7 C -0.117 4.117 8 N -0.284 5.284 9 C -0.338 4.338 10 H 0.067 0.933 11 C -0.240 4.240 12 N -0.572 5.572 13 Si 0.769 3.231 14 H -0.201 1.201 15 H -0.231 1.231 16 H -0.224 1.224 17 C 0.072 3.928 18 C -0.172 4.172 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.156 4.156 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.097 -9.302 5.354 10.935 hybrid contribution 0.227 1.567 0.020 1.584 sum 2.324 -7.734 5.374 9.701 Atomic orbital electron populations 1.21978 0.98401 0.98724 1.00148 1.20192 0.91270 0.96198 0.84035 0.91619 1.22634 0.87769 0.99960 0.97346 1.61740 1.05564 1.11631 1.46804 1.22189 0.99208 0.90505 0.98967 1.22370 1.00730 0.97024 0.91614 1.43674 1.62579 1.03866 1.18249 1.19026 1.11165 0.91685 1.11916 0.93271 1.25376 0.97662 0.99545 1.01402 1.70129 1.24955 1.10934 1.51217 0.85638 0.79894 0.79393 0.78154 1.20129 1.23051 1.22422 1.21299 0.93467 0.84195 0.93860 1.22675 0.98663 0.95995 0.99868 1.22025 0.97929 0.95561 0.99727 1.22059 0.97030 0.97528 0.98806 1.22564 0.98615 0.95384 0.99047 0.94357 0.93662 0.94764 0.96176 0.91683 0.96311 0.91447 0.93521 0.91354 0.91214 0.96030 0.95015 0.92507 0.94015 0.94255 0.91155 0.92382 0.90934 0.92236 0.92412 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 9.04 71.98 0.65 -5.09 16 2 C 0.19 8.51 1.49 44.99 0.07 8.58 16 3 H 0.07 3.44 4.62 -2.39 -0.01 3.42 16 4 C 0.05 1.94 4.15 86.30 0.36 2.30 16 5 N -0.53 -18.99 4.74 -948.89 -4.50 -23.49 16 6 C 0.04 1.44 9.32 127.69 1.19 2.63 16 7 C 0.03 0.84 9.57 127.69 1.22 2.06 16 8 N -0.57 -26.24 2.17 -646.43 -1.40 -27.65 16 9 C -0.21 -10.83 7.95 84.04 0.67 -10.16 16 10 H 0.05 2.68 6.66 -2.91 -0.02 2.66 16 11 C -0.05 -2.46 4.92 84.86 0.42 -2.05 16 12 N -0.92 -52.22 9.93 21.65 0.22 -52.00 16 13 Si 0.94 45.32 29.58 68.60 2.03 47.35 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 16 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 17 C 0.18 7.15 2.55 46.41 0.12 7.27 16 18 C -0.13 -5.19 6.34 31.67 0.20 -4.99 16 19 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 20 C -0.12 -3.38 6.80 31.32 0.21 -3.16 16 21 C -0.12 -4.20 6.39 31.80 0.20 -4.00 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.04 2.26 7.06 -2.39 -0.02 2.25 16 24 H 0.03 1.34 7.34 -2.39 -0.02 1.32 16 25 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 26 H 0.06 2.28 6.96 -2.39 -0.02 2.26 16 27 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 29 H 0.05 2.06 6.58 -2.39 -0.02 2.04 16 30 H 0.07 1.75 8.12 -2.38 -0.02 1.73 16 31 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 32 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.06 2.18 6.28 -2.38 -0.01 2.17 16 35 H 0.04 1.90 7.12 -2.39 -0.02 1.88 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.60 6.58 -2.39 -0.02 1.59 16 Total: -1.00 -57.06 316.33 2.82 -54.24 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.95 Total: 11.40 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.52 Total: -9.85 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.69 Total: -103.14 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -57.06 2.82 -54.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713995608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.059 kcal (2) G-P(sol) polarization free energy of solvation -57.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds