Wall clock time and date at job start Mon Mar 30 2020 03:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46627 * 2 1 4 4 C 1.53001 * 109.46985 * 240.00070 * 2 1 3 5 5 N 1.46894 * 109.47188 * 62.33114 * 4 2 1 6 6 C 1.46894 * 111.00208 * 75.71333 * 5 4 2 7 7 C 1.46901 * 111.00202 * 199.66506 * 5 4 2 8 8 N 1.46902 * 109.46970 * 119.99853 * 2 1 3 9 9 C 1.46846 * 110.99933 * 173.79051 * 8 2 1 10 10 C 1.53031 * 109.52553 * 185.84150 * 9 8 2 11 11 C 1.53118 * 109.27591 * 300.82162 * 10 9 8 12 12 C 1.50705 * 109.52453 * 177.55729 * 11 10 9 13 13 H 1.08005 * 119.99338 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00156 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99850 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99638 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47453 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46916 * 120.00189 * 16 14 12 19 19 H 1.48499 * 109.47216 * 239.99567 * 16 14 12 20 20 C 1.53124 * 109.16122 * 57.65602 * 11 10 9 21 21 C 1.46845 * 110.99977 * 298.00201 * 8 2 1 22 22 H 1.09001 * 109.47392 * 60.00012 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47436 * 300.00116 * 1 2 3 25 25 H 1.09000 * 109.46526 * 182.33247 * 4 2 1 26 26 H 1.09001 * 109.47111 * 302.33071 * 4 2 1 27 27 H 1.09000 * 109.47609 * 54.51898 * 6 5 4 28 28 H 1.09006 * 109.47569 * 174.52390 * 6 5 4 29 29 H 1.09001 * 109.47341 * 294.52041 * 6 5 4 30 30 H 1.09011 * 109.46746 * 59.99624 * 7 5 4 31 31 H 1.08997 * 109.47410 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47016 * 300.00531 * 7 5 4 33 33 H 1.09003 * 109.46051 * 65.82032 * 9 8 2 34 34 H 1.08997 * 109.46084 * 305.85807 * 9 8 2 35 35 H 1.08995 * 109.50765 * 180.87998 * 10 9 8 36 36 H 1.09002 * 109.50608 * 60.75704 * 10 9 8 37 37 H 1.09001 * 109.52682 * 297.74774 * 11 10 9 38 38 H 0.97004 * 119.99704 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.50555 * 62.28524 * 20 11 10 40 40 H 1.09004 * 109.50239 * 182.40302 * 20 11 10 41 41 H 1.09004 * 109.46158 * 54.14668 * 21 8 2 42 42 H 1.09001 * 109.46137 * 294.17691 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5968 0.0030 -2.4480 6 6 2.3920 1.2213 -2.6510 7 6 1.6470 -0.8620 -3.6343 8 7 2.0196 -0.6925 1.1995 9 6 3.4800 -0.8418 1.1616 10 6 3.9382 -1.6913 2.3491 11 6 3.5096 -1.0113 3.6524 12 6 3.9053 -1.8729 4.8238 13 1 4.4123 -2.8117 4.6567 14 6 3.6200 -1.4625 6.1089 15 7 3.0031 -0.3191 6.3123 16 14 4.1112 -2.5302 7.5608 17 1 4.7889 -3.7559 7.0672 18 1 5.0375 -1.7733 8.4409 19 1 2.8983 -2.9098 8.3289 20 6 1.9899 -0.8240 3.6453 21 6 1.5882 0.0005 2.4201 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1292 -0.7576 -1.2285 26 1 1.6429 -1.7361 -1.2704 27 1 3.4510 0.9644 -2.6749 28 1 2.1095 1.6865 -3.5955 29 1 2.2055 1.9174 -1.8332 30 1 0.9945 -1.7223 -3.4844 31 1 1.3134 -0.3011 -4.5073 32 1 2.6697 -1.2047 -3.7911 33 1 3.9472 0.1415 1.2166 34 1 3.7711 -1.3304 0.2318 35 1 5.0236 -1.7890 2.3295 36 1 3.4822 -2.6794 2.2873 37 1 3.9961 -0.0392 3.7332 38 1 2.8027 -0.0302 7.2164 39 1 1.5033 -1.7984 3.6038 40 1 1.6834 -0.3018 4.5517 41 1 0.5052 0.1236 2.4044 42 1 2.0642 0.9798 2.4693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713999908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:07 Heat of formation + Delta-G solvation = 1.051076 kcal Electronic energy + Delta-G solvation = -18267.726485 eV Core-core repulsion = 15668.383899 eV Total energy + Delta-G solvation = -2599.342586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.97587 -37.07061 -34.25511 -32.00095 -30.00258 -29.39356 -27.67847 -26.73390 -25.42736 -22.85191 -22.05811 -21.27135 -19.53532 -18.57549 -16.54994 -15.96545 -15.45135 -15.05490 -14.56503 -14.19229 -13.92276 -13.67881 -13.18310 -12.62091 -12.55560 -12.50497 -12.40011 -12.10521 -11.77597 -11.70017 -11.63771 -11.15574 -10.91257 -10.75501 -10.62858 -10.51589 -10.30050 -10.14221 -9.91740 -9.36321 -8.91719 -8.63034 -8.35979 -8.24882 -7.65038 -5.93481 -3.98594 3.32682 3.40708 3.44923 3.81449 4.48254 4.60851 4.98322 5.06028 5.16944 5.26550 5.36711 5.41647 5.50583 5.60592 5.72876 5.75098 5.82477 5.87926 5.92798 5.96276 6.13132 6.23692 6.24667 6.37175 6.39946 6.54868 6.68302 6.73476 6.90086 6.95804 6.96458 7.14257 7.23871 7.51357 7.69126 7.79562 7.89962 8.10290 8.21442 8.52994 9.05349 9.65637 11.12703 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052379 B = 0.004962 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.439709 B = 5641.015942 C = 5857.492291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.086 3.914 3 H 0.031 0.969 4 C 0.058 3.942 5 N -0.545 5.545 6 C 0.023 3.977 7 C 0.027 3.973 8 N -0.531 5.531 9 C 0.056 3.944 10 C -0.106 4.106 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.103 4.103 21 C 0.057 3.943 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 1.646 -15.893 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.125 4.125 7 C -0.122 4.122 8 N -0.257 5.257 9 C -0.072 4.072 10 C -0.143 4.143 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.142 4.142 21 C -0.070 4.070 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.736 1.427 -15.669 16.171 hybrid contribution 1.500 0.098 0.711 1.662 sum -2.236 1.525 -14.958 15.201 Atomic orbital electron populations 1.21725 0.94072 1.02052 1.01140 1.21484 0.96234 0.94962 0.89614 0.95117 1.22304 0.97817 0.97836 0.88985 1.61865 1.54784 1.06934 1.03368 1.22429 0.94989 0.93008 1.02109 1.22370 0.99819 0.97268 0.92721 1.62015 1.11538 1.50722 1.01430 1.22194 0.87302 0.98464 0.99221 1.21670 0.98631 0.98925 0.95119 1.18690 0.92235 0.95529 0.90664 1.21259 1.37070 1.05580 0.90803 0.92748 1.24967 0.95212 0.95046 0.98810 1.69892 1.41727 1.20716 1.20816 0.86588 0.78209 0.80675 0.82819 1.19856 1.21184 1.21080 1.21654 0.99041 0.98365 0.95094 1.22303 0.98748 0.95484 0.90445 0.91799 0.92477 0.93120 0.94198 0.90184 0.95733 0.91699 0.91288 0.91319 0.91622 0.95884 0.96147 0.92331 0.93394 0.92515 0.96269 0.93203 0.93844 0.89037 0.92155 0.96233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.89 37.16 0.33 -1.54 16 2 C 0.09 1.31 2.19 -67.71 -0.15 1.16 16 3 H 0.03 0.49 6.97 -51.93 -0.36 0.13 16 4 C 0.06 0.78 4.08 -3.83 -0.02 0.77 16 5 N -0.55 -6.38 4.28 -251.26 -1.08 -7.45 16 6 C 0.02 0.24 9.41 60.06 0.57 0.81 16 7 C 0.03 0.25 9.51 60.06 0.57 0.83 16 8 N -0.53 -9.69 4.52 -226.69 -1.03 -10.72 16 9 C 0.06 1.04 5.09 -3.84 -0.02 1.02 16 10 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 11 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 12 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.70 11.37 55.43 0.63 -25.07 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 C -0.10 -2.49 5.12 -26.65 -0.14 -2.62 16 21 C 0.06 1.16 5.25 -3.83 -0.02 1.14 16 22 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.73 6.32 -51.93 -0.33 0.40 16 25 H 0.04 0.55 5.80 -51.93 -0.30 0.25 16 26 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 27 H 0.02 0.26 7.97 -51.93 -0.41 -0.16 16 28 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 29 H 0.07 0.77 7.04 -51.93 -0.37 0.40 16 30 H 0.07 0.63 8.07 -51.92 -0.42 0.21 16 31 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.96 5.82 -51.93 -0.30 0.66 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 41 H 0.06 1.13 6.07 -51.93 -0.32 0.82 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -28.39 314.98 -9.04 -37.43 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.69 Total: -2.69 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.40 Total: -12.74 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -1.47 Total: -43.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.39 -9.04 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713999908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.484 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds