Wall clock time and date at job start Mon Mar 30 2020 03:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46627 * 2 1 4 4 C 1.53001 * 109.46985 * 240.00070 * 2 1 3 5 5 N 1.46894 * 109.47188 * 62.33114 * 4 2 1 6 6 C 1.46894 * 111.00208 * 75.71333 * 5 4 2 7 7 C 1.46901 * 111.00202 * 199.66506 * 5 4 2 8 8 N 1.46902 * 109.46970 * 119.99853 * 2 1 3 9 9 C 1.46846 * 110.99933 * 173.79051 * 8 2 1 10 10 C 1.53031 * 109.52553 * 185.84150 * 9 8 2 11 11 C 1.53118 * 109.27591 * 300.82162 * 10 9 8 12 12 C 1.50705 * 109.52453 * 177.55729 * 11 10 9 13 13 H 1.08005 * 119.99338 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00156 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99850 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99638 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47453 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46916 * 120.00189 * 16 14 12 19 19 H 1.48499 * 109.47216 * 239.99567 * 16 14 12 20 20 C 1.53124 * 109.16122 * 57.65602 * 11 10 9 21 21 C 1.46845 * 110.99977 * 298.00201 * 8 2 1 22 22 H 1.09001 * 109.47392 * 60.00012 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47436 * 300.00116 * 1 2 3 25 25 H 1.09000 * 109.46526 * 182.33247 * 4 2 1 26 26 H 1.09001 * 109.47111 * 302.33071 * 4 2 1 27 27 H 1.09000 * 109.47609 * 54.51898 * 6 5 4 28 28 H 1.09006 * 109.47569 * 174.52390 * 6 5 4 29 29 H 1.09001 * 109.47341 * 294.52041 * 6 5 4 30 30 H 1.09011 * 109.46746 * 59.99624 * 7 5 4 31 31 H 1.08997 * 109.47410 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47016 * 300.00531 * 7 5 4 33 33 H 1.09003 * 109.46051 * 65.82032 * 9 8 2 34 34 H 1.08997 * 109.46084 * 305.85807 * 9 8 2 35 35 H 1.08995 * 109.50765 * 180.87998 * 10 9 8 36 36 H 1.09002 * 109.50608 * 60.75704 * 10 9 8 37 37 H 1.09001 * 109.52682 * 297.74774 * 11 10 9 38 38 H 0.97004 * 119.99704 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.50555 * 62.28524 * 20 11 10 40 40 H 1.09004 * 109.50239 * 182.40302 * 20 11 10 41 41 H 1.09004 * 109.46158 * 54.14668 * 21 8 2 42 42 H 1.09001 * 109.46137 * 294.17691 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5968 0.0030 -2.4480 6 6 2.3920 1.2213 -2.6510 7 6 1.6470 -0.8620 -3.6343 8 7 2.0196 -0.6925 1.1995 9 6 3.4800 -0.8418 1.1616 10 6 3.9382 -1.6913 2.3491 11 6 3.5096 -1.0113 3.6524 12 6 3.9053 -1.8729 4.8238 13 1 4.4123 -2.8117 4.6567 14 6 3.6200 -1.4625 6.1089 15 7 3.0031 -0.3191 6.3123 16 14 4.1112 -2.5302 7.5608 17 1 4.7889 -3.7559 7.0672 18 1 5.0375 -1.7733 8.4409 19 1 2.8983 -2.9098 8.3289 20 6 1.9899 -0.8240 3.6453 21 6 1.5882 0.0005 2.4201 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1292 -0.7576 -1.2285 26 1 1.6429 -1.7361 -1.2704 27 1 3.4510 0.9644 -2.6749 28 1 2.1095 1.6865 -3.5955 29 1 2.2055 1.9174 -1.8332 30 1 0.9945 -1.7223 -3.4844 31 1 1.3134 -0.3011 -4.5073 32 1 2.6697 -1.2047 -3.7911 33 1 3.9472 0.1415 1.2166 34 1 3.7711 -1.3304 0.2318 35 1 5.0236 -1.7890 2.3295 36 1 3.4822 -2.6794 2.2873 37 1 3.9961 -0.0392 3.7332 38 1 2.8027 -0.0302 7.2164 39 1 1.5033 -1.7984 3.6038 40 1 1.6834 -0.3018 4.5517 41 1 0.5052 0.1236 2.4044 42 1 2.0642 0.9798 2.4693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713999908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:06 Heat of formation + Delta-G solvation = -16.808703 kcal Electronic energy + Delta-G solvation = -18268.500943 eV Core-core repulsion = 15668.383899 eV Total energy + Delta-G solvation = -2600.117044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37906 -38.27499 -35.92167 -33.82357 -31.67181 -30.98894 -28.45356 -27.84158 -27.35606 -24.23225 -23.70066 -22.69485 -20.80752 -20.36964 -18.48193 -17.44508 -16.55857 -16.43458 -16.08869 -15.41385 -15.34406 -14.98676 -14.70985 -14.33052 -14.23875 -14.11884 -13.47143 -13.28281 -13.02598 -12.85114 -12.78789 -12.55273 -12.54740 -12.43163 -12.16059 -12.06251 -11.88022 -11.77319 -11.70453 -11.28648 -10.76247 -10.60142 -10.36677 -9.30756 -9.12167 -8.07341 -6.20869 1.40336 1.42149 1.53675 2.44371 2.75748 3.19430 3.33947 3.89549 3.98522 4.19998 4.31274 4.33806 4.39951 4.43919 4.50269 4.58909 4.62820 4.66862 4.75902 4.82242 4.88116 4.92067 4.96439 5.01877 5.04467 5.05524 5.07797 5.23135 5.26595 5.34630 5.46271 5.58189 5.64423 5.99078 6.02938 6.04791 6.13218 6.32564 6.39428 6.41924 6.90850 7.46987 8.97474 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052379 B = 0.004962 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.439709 B = 5641.015942 C = 5857.492291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.067 3.933 5 N -0.553 5.553 6 C 0.023 3.977 7 C 0.026 3.974 8 N -0.534 5.534 9 C 0.064 3.936 10 C -0.099 4.099 11 C 0.043 3.957 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.094 4.094 21 C 0.070 3.930 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.052 0.948 37 H -0.015 1.015 38 H 0.260 0.740 39 H 0.032 0.968 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 1.108 -17.477 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.061 4.061 5 N -0.277 5.277 6 C -0.125 4.125 7 C -0.122 4.122 8 N -0.260 5.260 9 C -0.064 4.064 10 C -0.136 4.136 11 C 0.025 3.975 12 C -0.570 4.570 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.132 4.132 21 C -0.058 4.058 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.004 0.996 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.939 0.887 -17.277 17.743 hybrid contribution 1.560 0.293 1.171 1.973 sum -2.379 1.180 -16.106 16.323 Atomic orbital electron populations 1.21663 0.93067 1.02023 1.01486 1.21563 0.96962 0.94650 0.89006 0.95552 1.22136 0.97383 0.97633 0.88944 1.61847 1.54940 1.07420 1.03502 1.22457 0.94873 0.92459 1.02756 1.22431 1.00158 0.97313 0.92260 1.61979 1.11337 1.50956 1.01765 1.22110 0.87501 0.97800 0.99003 1.21538 0.98917 0.98768 0.94422 1.18669 0.92793 0.93826 0.92228 1.21616 1.37402 1.05858 0.92170 0.93089 1.25746 0.95136 0.96271 1.01479 1.70030 1.42311 1.22059 1.21414 0.85569 0.77971 0.79102 0.79384 1.19202 1.20694 1.20562 1.21412 0.98078 0.97866 0.95845 1.22056 0.99611 0.94152 0.89993 0.90431 0.92633 0.93751 0.94596 0.90269 0.95785 0.89814 0.92196 0.91030 0.90014 0.95629 0.96743 0.89431 0.92983 0.92875 0.99646 0.93110 0.94964 0.92118 0.90508 0.97299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.89 71.98 0.64 -2.65 16 2 C 0.09 2.49 2.19 44.92 0.10 2.59 16 3 H 0.03 0.80 6.97 -2.39 -0.02 0.79 16 4 C 0.07 1.65 4.08 86.30 0.35 2.00 16 5 N -0.55 -11.45 4.28 -948.86 -4.07 -15.52 16 6 C 0.02 0.42 9.41 127.69 1.20 1.62 16 7 C 0.03 0.42 9.51 127.69 1.21 1.64 16 8 N -0.53 -18.96 4.52 -871.12 -3.94 -22.91 16 9 C 0.06 2.29 5.09 86.32 0.44 2.73 16 10 C -0.10 -4.23 5.32 30.64 0.16 -4.07 16 11 C 0.04 2.26 2.16 -11.46 -0.02 2.23 16 12 C -0.53 -30.24 8.56 25.60 0.22 -30.02 16 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 14 C 0.01 0.67 5.31 84.66 0.45 1.12 16 15 N -0.92 -54.12 11.37 21.45 0.24 -53.88 16 16 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 C -0.09 -4.62 5.12 30.65 0.16 -4.47 16 21 C 0.07 2.82 5.25 86.33 0.45 3.27 16 22 H 0.08 1.84 7.67 -2.39 -0.02 1.82 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.21 6.32 -2.39 -0.02 1.20 16 25 H 0.04 0.91 5.80 -2.39 -0.01 0.89 16 26 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 27 H 0.02 0.45 7.97 -2.39 -0.02 0.43 16 28 H 0.08 1.23 8.03 -2.38 -0.02 1.21 16 29 H 0.06 1.22 7.04 -2.39 -0.02 1.20 16 30 H 0.07 1.11 8.07 -2.38 -0.02 1.10 16 31 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 2.68 5.82 -2.39 -0.01 2.66 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 3.36 6.17 -2.39 -0.01 3.35 16 41 H 0.08 2.84 6.07 -2.38 -0.01 2.83 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -61.07 314.98 0.58 -60.49 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.95 Total: 9.32 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.36 Total: -24.01 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -7.76 Total: -92.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.07 0.58 -60.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713999908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.680 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds