Wall clock time and date at job start Mon Mar 30 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46788 * 2 1 4 4 C 1.53004 * 109.46886 * 240.00831 * 2 1 3 5 5 N 1.46896 * 109.47369 * 62.74110 * 4 2 1 6 6 C 1.46897 * 110.99780 * 75.13272 * 5 4 2 7 7 C 1.46905 * 110.99873 * 199.08640 * 5 4 2 8 8 N 1.46893 * 109.47315 * 120.00606 * 2 1 3 9 9 C 1.46846 * 110.99992 * 179.21065 * 8 2 1 10 10 C 1.53040 * 109.52385 * 185.83716 * 9 8 2 11 11 C 1.53117 * 109.27800 * 300.81993 * 10 9 8 12 12 C 1.53123 * 109.16164 * 57.65643 * 11 10 9 13 13 H 1.09007 * 109.50317 * 62.28258 * 12 11 10 14 14 C 1.50697 * 109.50593 * 182.40503 * 12 11 10 15 15 H 1.08001 * 120.00314 * 119.79717 * 14 12 11 16 16 C 1.37882 * 119.99794 * 299.80023 * 14 12 11 17 17 N 1.31512 * 119.99962 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00112 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47126 * 119.99987 * 18 16 14 21 21 H 1.48498 * 109.47494 * 240.00340 * 18 16 14 22 22 C 1.46850 * 111.00000 * 303.41756 * 8 2 1 23 23 H 1.09008 * 109.46601 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47184 * 299.99210 * 1 2 3 25 25 H 1.09001 * 109.47392 * 59.99926 * 1 2 3 26 26 H 1.08997 * 109.46985 * 182.74377 * 4 2 1 27 27 H 1.09007 * 109.47023 * 302.74156 * 4 2 1 28 28 H 1.09007 * 109.47351 * 54.71420 * 6 5 4 29 29 H 1.09005 * 109.47126 * 174.70534 * 6 5 4 30 30 H 1.08994 * 109.47534 * 294.70884 * 6 5 4 31 31 H 1.09000 * 109.46867 * 60.00227 * 7 5 4 32 32 H 1.08999 * 109.46620 * 179.97438 * 7 5 4 33 33 H 1.08999 * 109.47105 * 299.99948 * 7 5 4 34 34 H 1.09001 * 109.46262 * 305.85374 * 9 8 2 35 35 H 1.08999 * 109.45957 * 65.82459 * 9 8 2 36 36 H 1.09002 * 109.50258 * 60.76241 * 10 9 8 37 37 H 1.08996 * 109.50714 * 180.83985 * 10 9 8 38 38 H 1.09003 * 109.52345 * 177.55561 * 11 10 9 39 39 H 1.08998 * 109.52483 * 297.68753 * 11 10 9 40 40 H 0.97003 * 120.00446 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.46296 * 294.18033 * 22 8 2 42 42 H 1.09001 * 109.45931 * 54.15000 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.6052 0.0087 -2.4478 6 6 2.3991 1.2301 -2.6373 7 6 1.6673 -0.8497 -3.6384 8 7 2.0198 -0.6926 1.1993 9 6 3.4876 -0.7285 1.2238 10 6 3.9587 -1.5796 2.4052 11 6 3.4225 -0.9781 3.7072 12 6 1.8946 -0.9072 3.6363 13 1 1.4875 -1.9142 3.5435 14 6 1.3621 -0.2620 4.8897 15 1 0.7876 0.6503 4.8253 16 6 1.6083 -0.8362 6.1188 17 7 2.3075 -1.9473 6.1972 18 14 0.9489 -0.0360 7.6725 19 1 0.1996 1.1953 7.3154 20 1 0.0416 -0.9824 8.3699 21 1 2.0809 0.3149 8.5674 22 6 1.4833 -0.0756 2.4192 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1289 -0.7639 -1.2252 27 1 1.6370 -1.7336 -1.2744 28 1 3.4588 0.9752 -2.6572 29 1 2.1211 1.7015 -3.5800 30 1 2.2066 1.9197 -1.8155 31 1 1.0157 -1.7122 -3.4988 32 1 1.3397 -0.2847 -4.5110 33 1 2.6922 -1.1890 -3.7885 34 1 3.8558 -1.1622 0.2940 35 1 3.8739 0.2852 1.3295 36 1 3.5841 -2.5971 2.2930 37 1 5.0483 -1.5939 2.4319 38 1 3.7194 -1.6054 4.5477 39 1 3.8288 0.0247 3.8396 40 1 2.4805 -2.3516 7.0619 41 1 1.8791 0.9350 2.5193 42 1 0.3958 -0.0352 2.3577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714003454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:10 Heat of formation + Delta-G solvation = 1.029861 kcal Electronic energy + Delta-G solvation = -18337.591468 eV Core-core repulsion = 15738.247963 eV Total energy + Delta-G solvation = -2599.343505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93118 -37.06169 -34.08992 -32.29098 -29.99827 -29.25167 -27.65843 -26.86113 -24.74067 -23.55668 -21.93874 -21.10510 -19.51341 -18.59192 -16.52962 -15.82160 -15.46772 -15.06147 -14.49971 -14.21371 -14.00738 -13.51449 -13.12965 -12.61492 -12.56886 -12.50875 -12.38301 -12.13415 -11.75597 -11.71875 -11.60233 -11.02880 -10.96952 -10.87013 -10.62172 -10.48857 -10.42783 -9.97789 -9.78605 -9.39354 -8.95766 -8.63299 -8.36725 -8.24274 -7.56524 -5.93742 -3.99501 3.32304 3.40306 3.44175 3.84620 4.45741 4.69008 5.03247 5.08322 5.20251 5.28370 5.36431 5.44949 5.52529 5.63764 5.74513 5.76248 5.83771 5.85583 5.97069 5.97749 6.10515 6.26475 6.34345 6.41524 6.47665 6.60436 6.64681 6.77327 6.81996 6.98293 6.99582 7.07278 7.27042 7.46835 7.74953 7.80466 7.92170 8.13998 8.22165 8.53369 9.04984 9.64631 11.12343 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043358 B = 0.005347 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.632281 B = 5235.192763 C = 5572.853068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.030 0.970 4 C 0.061 3.939 5 N -0.545 5.545 6 C 0.023 3.977 7 C 0.027 3.973 8 N -0.535 5.535 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.512 4.512 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.067 3.933 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.258 0.742 41 H 0.016 0.984 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 2.859 -15.556 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.048 0.952 4 C -0.067 4.067 5 N -0.269 5.269 6 C -0.125 4.125 7 C -0.122 4.122 8 N -0.260 5.260 9 C -0.068 4.068 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.060 4.060 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.426 2.393 -15.378 15.569 hybrid contribution 0.940 1.041 0.801 1.616 sum 1.366 3.434 -14.577 15.038 Atomic orbital electron populations 1.21767 0.93991 1.02198 1.01296 1.21463 0.96283 0.94765 0.89639 0.95241 1.22265 0.97665 0.97818 0.88980 1.61868 1.54954 1.06819 1.03277 1.22426 0.94915 0.93011 1.02152 1.22368 0.99739 0.97378 0.92676 1.61999 1.07841 1.54071 1.02102 1.22082 0.88111 0.98036 0.98572 1.21669 0.98035 0.99589 0.96155 1.21647 0.98634 0.98959 0.95590 1.18670 0.92024 0.95753 0.89977 0.94791 1.21200 1.33287 1.09494 0.91149 0.92829 1.24932 0.95180 0.94883 0.98861 1.69905 1.39608 1.18913 1.24358 0.86585 0.78705 0.79448 0.83537 1.19862 1.21059 1.21149 1.22358 0.98764 0.95683 0.89179 0.92402 0.92751 0.91885 0.94489 0.90178 0.95831 0.91727 0.91275 0.91297 0.91647 0.95948 0.92436 0.96214 0.92125 0.93726 0.89201 0.95283 0.93175 0.96617 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.73 37.16 0.32 -1.74 16 2 C 0.09 1.39 2.18 -67.71 -0.15 1.24 16 3 H 0.03 0.49 6.92 -51.93 -0.36 0.13 16 4 C 0.06 0.83 4.25 -3.82 -0.02 0.81 16 5 N -0.55 -6.54 4.31 -251.25 -1.08 -7.62 16 6 C 0.02 0.25 9.40 60.06 0.56 0.81 16 7 C 0.03 0.26 9.51 60.07 0.57 0.83 16 8 N -0.53 -10.09 4.53 -226.68 -1.03 -11.12 16 9 C 0.06 1.08 5.21 -3.83 -0.02 1.06 16 10 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.51 -14.22 8.56 -34.44 -0.29 -14.51 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 C 0.07 1.45 4.37 -3.83 -0.02 1.44 16 23 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.05 0.87 6.23 -51.93 -0.32 0.55 16 25 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 26 H 0.04 0.51 5.87 -51.93 -0.31 0.21 16 27 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 28 H 0.02 0.25 7.98 -51.92 -0.41 -0.17 16 29 H 0.06 0.58 8.03 -51.93 -0.42 0.17 16 30 H 0.07 0.78 7.00 -51.93 -0.36 0.42 16 31 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.92 5.93 -51.93 -0.31 0.61 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 1.42 5.92 -51.93 -0.31 1.11 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -28.30 314.89 -9.07 -37.37 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.69 Total: -2.34 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.37 Total: -12.49 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -1.48 Total: -43.70 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.30 -9.07 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds