Wall clock time and date at job start Mon Mar 30 2020 03:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.52998 * 109.46897 * 119.99820 * 2 1 3 5 5 N 1.46903 * 109.46872 * 175.00305 * 4 2 1 6 6 C 1.46893 * 111.00296 * 66.04482 * 5 4 2 7 7 C 1.46899 * 110.99631 * 190.00103 * 5 4 2 8 8 N 1.46902 * 109.47263 * 239.99942 * 2 1 3 9 9 C 1.46856 * 110.99619 * 306.04697 * 8 2 1 10 10 C 1.53039 * 109.51787 * 185.84053 * 9 8 2 11 11 C 1.53123 * 109.31189 * 300.79882 * 10 9 8 12 12 C 1.53203 * 109.11533 * 57.63615 * 11 10 9 13 13 H 1.09005 * 109.49195 * 62.32110 * 12 11 10 14 14 C 1.50697 * 109.52482 * 182.40166 * 12 11 10 15 15 H 1.08000 * 120.00202 * 119.84250 * 14 12 11 16 16 C 1.37885 * 120.00305 * 299.84948 * 14 12 11 17 17 N 1.31514 * 120.00079 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 119.99820 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.46930 * 90.00338 * 18 16 14 20 20 H 1.48491 * 109.47343 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47194 * 330.00589 * 18 16 14 22 22 C 1.46846 * 111.00121 * 70.25580 * 8 2 1 23 23 H 1.09004 * 109.47133 * 60.00172 * 1 2 3 24 24 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47514 * 300.00189 * 1 2 3 26 26 H 1.08994 * 109.47090 * 295.00072 * 4 2 1 27 27 H 1.08999 * 109.47398 * 55.00195 * 4 2 1 28 28 H 1.09000 * 109.47085 * 60.00233 * 6 5 4 29 29 H 1.08998 * 109.47528 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47119 * 299.99994 * 6 5 4 31 31 H 1.09001 * 109.47404 * 59.99841 * 7 5 4 32 32 H 1.09004 * 109.46873 * 179.97438 * 7 5 4 33 33 H 1.08990 * 109.47299 * 299.99556 * 7 5 4 34 34 H 1.09000 * 109.46462 * 65.82793 * 9 8 2 35 35 H 1.09001 * 109.45242 * 305.84772 * 9 8 2 36 36 H 1.09002 * 109.50563 * 60.76214 * 10 9 8 37 37 H 1.09003 * 109.50107 * 180.84195 * 10 9 8 38 38 H 1.08994 * 109.52349 * 177.58253 * 11 10 9 39 39 H 1.08997 * 109.52263 * 297.77214 * 11 10 9 40 40 H 0.97002 * 119.99548 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46012 * 294.17710 * 22 8 2 42 42 H 1.08994 * 109.46057 * 54.14289 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.1310 0.4993 1.2720 7 6 4.0106 -1.7143 2.2456 8 7 2.0197 -0.6925 -1.1994 9 6 1.4345 -2.0351 -1.3077 10 6 2.0744 -2.7786 -2.4823 11 6 1.8318 -1.9910 -3.7728 12 6 2.4080 -0.5802 -3.6154 13 1 3.4854 -0.6423 -3.4620 14 6 2.1223 0.2221 -4.8586 15 1 1.5359 1.1268 -4.7946 16 6 2.6094 -0.1987 -6.0780 17 7 2.3604 0.5018 -7.1628 18 14 3.6241 -1.7632 -6.1887 19 1 2.7249 -2.9205 -6.4284 20 1 4.5914 -1.6475 -7.3094 21 1 4.3625 -1.9654 -4.9163 22 6 1.7585 0.0996 -2.4080 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7516 -0.1583 2.1369 27 1 1.6053 -1.7198 1.2952 28 1 3.8524 0.9758 2.2119 29 1 5.2147 0.3923 1.2267 30 1 3.7910 1.1139 0.4383 31 1 3.5833 -2.7091 2.1197 32 1 5.0969 -1.7748 2.1789 33 1 3.7277 -1.3180 3.2207 34 1 0.3604 -1.9508 -1.4731 35 1 1.6179 -2.5865 -0.3855 36 1 3.1466 -2.8754 -2.3111 37 1 1.6293 -3.7696 -2.5716 38 1 2.3228 -2.4953 -4.6051 39 1 0.7608 -1.9275 -3.9649 40 1 2.7034 0.2058 -8.0205 41 1 0.6828 0.1739 -2.5681 42 1 2.1770 1.0985 -2.2849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714003458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:14 Heat of formation + Delta-G solvation = 9.911279 kcal Electronic energy + Delta-G solvation = -18742.402931 eV Core-core repulsion = 16143.444552 eV Total energy + Delta-G solvation = -2598.958378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17173 -36.96571 -34.29291 -32.25895 -30.22690 -29.57187 -27.51359 -26.86576 -24.83015 -23.75287 -22.03944 -21.44663 -19.52283 -18.42791 -16.64410 -15.92589 -15.52061 -14.95772 -14.66811 -14.24305 -13.96116 -13.81550 -13.27037 -13.09094 -12.56980 -12.39119 -12.25207 -12.12422 -11.94875 -11.88651 -11.60108 -11.53077 -11.08185 -10.96723 -10.93109 -10.40300 -10.23588 -9.95067 -9.82647 -9.55346 -8.98759 -8.81508 -8.43334 -8.09903 -7.50688 -5.99767 -3.97957 3.35234 3.46172 3.51464 4.03473 4.50289 4.52674 4.92459 5.17738 5.30175 5.33405 5.36418 5.45703 5.51855 5.54696 5.61918 5.70100 5.75238 5.78337 5.84565 5.86898 5.95666 6.05031 6.14819 6.20459 6.22410 6.38637 6.42922 6.48973 6.65681 6.75004 6.93972 6.98236 7.18032 7.20104 7.33490 7.58440 7.78723 7.84445 8.01173 8.60843 9.03917 9.63992 11.13614 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.006916 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.894549 B = 4047.423292 C = 4195.906115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.083 3.917 3 H 0.078 0.922 4 C 0.067 3.933 5 N -0.523 5.523 6 C 0.029 3.971 7 C 0.026 3.974 8 N -0.513 5.513 9 C 0.066 3.934 10 C -0.118 4.118 11 C -0.121 4.121 12 C 0.021 3.979 13 H 0.036 0.964 14 C -0.511 4.511 15 H 0.071 0.929 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.262 1.262 22 C 0.077 3.923 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.014 0.986 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.262 0.738 41 H 0.024 0.976 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -4.032 17.859 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.027 4.027 3 H 0.096 0.904 4 C -0.061 4.061 5 N -0.246 5.246 6 C -0.119 4.119 7 C -0.122 4.122 8 N -0.236 5.236 9 C -0.062 4.062 10 C -0.156 4.156 11 C -0.158 4.158 12 C 0.002 3.998 13 H 0.054 0.946 14 C -0.550 4.550 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.544 5.544 18 Si 0.719 3.281 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.187 1.187 22 C -0.050 4.050 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.277 -4.275 17.262 17.786 hybrid contribution -0.653 -0.401 0.443 0.885 sum -0.376 -4.677 17.705 18.316 Atomic orbital electron populations 1.22460 0.97934 1.02158 1.02064 1.21684 0.91816 0.98113 0.91067 0.90433 1.22182 0.87938 1.00256 0.95766 1.61791 1.05151 1.11646 1.45972 1.22364 0.99593 0.90210 0.99757 1.22368 1.00743 0.97296 0.91809 1.62089 1.57770 1.02095 1.01687 1.21956 0.95622 0.90557 0.98074 1.21629 1.01044 0.97264 0.95619 1.22013 1.00732 0.98260 0.94836 1.19149 0.96320 0.91327 0.92984 0.94641 1.21039 1.33799 1.09900 0.90242 0.91116 1.24983 0.95658 0.96848 0.95671 1.69909 1.46281 1.39327 0.98852 0.86822 0.80203 0.83710 0.77405 1.20856 1.22775 1.18663 1.22072 0.97766 0.96251 0.88919 0.91845 0.92337 0.92867 0.95321 0.91096 0.96744 0.91812 0.90676 0.91772 0.91630 0.96579 0.95706 0.91992 0.91760 0.93315 0.93794 0.92849 0.92810 0.95821 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.44 37.16 0.31 -2.09 16 2 C 0.08 1.17 2.08 -67.71 -0.14 1.03 16 3 H 0.08 1.12 6.64 -51.93 -0.34 0.78 16 4 C 0.07 0.83 4.13 -3.82 -0.02 0.82 16 5 N -0.52 -6.87 4.74 -251.27 -1.19 -8.06 16 6 C 0.03 0.35 9.32 60.06 0.56 0.91 16 7 C 0.03 0.28 9.57 60.06 0.57 0.86 16 8 N -0.51 -8.90 4.33 -226.69 -0.98 -9.88 16 9 C 0.07 1.09 4.54 -3.83 -0.02 1.07 16 10 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 11 C -0.12 -2.69 4.75 -26.56 -0.13 -2.82 16 12 C 0.02 0.52 1.85 -91.65 -0.17 0.35 16 13 H 0.04 0.91 7.20 -51.93 -0.37 0.54 16 14 C -0.51 -14.55 9.14 -34.44 -0.31 -14.87 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.91 -28.17 13.96 55.43 0.77 -27.39 16 18 Si 0.89 22.68 24.36 -169.99 -4.14 18.54 16 19 H -0.28 -7.02 6.89 56.52 0.39 -6.63 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 22 C 0.08 1.58 4.36 -3.84 -0.02 1.56 16 23 H 0.06 0.90 6.82 -51.93 -0.35 0.55 16 24 H 0.06 0.74 6.46 -51.93 -0.34 0.40 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 27 H 0.07 0.87 6.59 -51.93 -0.34 0.52 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.02 0.41 6.58 -51.93 -0.34 0.07 16 35 H 0.06 0.92 6.33 -51.93 -0.33 0.60 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 1.04 3.37 -51.93 -0.18 0.86 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.02 0.49 6.88 -51.93 -0.36 0.14 16 42 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -30.37 306.73 -8.06 -38.44 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.53 Total: -2.69 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 0.39 Total: -13.57 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.40 Total: -45.34 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.37 -8.06 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.346 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds