Wall clock time and date at job start Mon Mar 30 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.52998 * 109.46897 * 119.99820 * 2 1 3 5 5 N 1.46903 * 109.46872 * 175.00305 * 4 2 1 6 6 C 1.46893 * 111.00296 * 66.04482 * 5 4 2 7 7 C 1.46899 * 110.99631 * 190.00103 * 5 4 2 8 8 N 1.46902 * 109.47263 * 239.99942 * 2 1 3 9 9 C 1.46856 * 110.99619 * 306.04697 * 8 2 1 10 10 C 1.53039 * 109.51787 * 185.84053 * 9 8 2 11 11 C 1.53123 * 109.31189 * 300.79882 * 10 9 8 12 12 C 1.53203 * 109.11533 * 57.63615 * 11 10 9 13 13 H 1.09005 * 109.49195 * 62.32110 * 12 11 10 14 14 C 1.50697 * 109.52482 * 182.40166 * 12 11 10 15 15 H 1.08000 * 120.00202 * 119.84250 * 14 12 11 16 16 C 1.37885 * 120.00305 * 299.84948 * 14 12 11 17 17 N 1.31514 * 120.00079 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 119.99820 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.46930 * 90.00338 * 18 16 14 20 20 H 1.48491 * 109.47343 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47194 * 330.00589 * 18 16 14 22 22 C 1.46846 * 111.00121 * 70.25580 * 8 2 1 23 23 H 1.09004 * 109.47133 * 60.00172 * 1 2 3 24 24 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47514 * 300.00189 * 1 2 3 26 26 H 1.08994 * 109.47090 * 295.00072 * 4 2 1 27 27 H 1.08999 * 109.47398 * 55.00195 * 4 2 1 28 28 H 1.09000 * 109.47085 * 60.00233 * 6 5 4 29 29 H 1.08998 * 109.47528 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47119 * 299.99994 * 6 5 4 31 31 H 1.09001 * 109.47404 * 59.99841 * 7 5 4 32 32 H 1.09004 * 109.46873 * 179.97438 * 7 5 4 33 33 H 1.08990 * 109.47299 * 299.99556 * 7 5 4 34 34 H 1.09000 * 109.46462 * 65.82793 * 9 8 2 35 35 H 1.09001 * 109.45242 * 305.84772 * 9 8 2 36 36 H 1.09002 * 109.50563 * 60.76214 * 10 9 8 37 37 H 1.09003 * 109.50107 * 180.84195 * 10 9 8 38 38 H 1.08994 * 109.52349 * 177.58253 * 11 10 9 39 39 H 1.08997 * 109.52263 * 297.77214 * 11 10 9 40 40 H 0.97002 * 119.99548 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46012 * 294.17710 * 22 8 2 42 42 H 1.08994 * 109.46057 * 54.14289 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.1310 0.4993 1.2720 7 6 4.0106 -1.7143 2.2456 8 7 2.0197 -0.6925 -1.1994 9 6 1.4345 -2.0351 -1.3077 10 6 2.0744 -2.7786 -2.4823 11 6 1.8318 -1.9910 -3.7728 12 6 2.4080 -0.5802 -3.6154 13 1 3.4854 -0.6423 -3.4620 14 6 2.1223 0.2221 -4.8586 15 1 1.5359 1.1268 -4.7946 16 6 2.6094 -0.1987 -6.0780 17 7 2.3604 0.5018 -7.1628 18 14 3.6241 -1.7632 -6.1887 19 1 2.7249 -2.9205 -6.4284 20 1 4.5914 -1.6475 -7.3094 21 1 4.3625 -1.9654 -4.9163 22 6 1.7585 0.0996 -2.4080 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7516 -0.1583 2.1369 27 1 1.6053 -1.7198 1.2952 28 1 3.8524 0.9758 2.2119 29 1 5.2147 0.3923 1.2267 30 1 3.7910 1.1139 0.4383 31 1 3.5833 -2.7091 2.1197 32 1 5.0969 -1.7748 2.1789 33 1 3.7277 -1.3180 3.2207 34 1 0.3604 -1.9508 -1.4731 35 1 1.6179 -2.5865 -0.3855 36 1 3.1466 -2.8754 -2.3111 37 1 1.6293 -3.7696 -2.5716 38 1 2.3228 -2.4953 -4.6051 39 1 0.7608 -1.9275 -3.9649 40 1 2.7034 0.2058 -8.0205 41 1 0.6828 0.1739 -2.5681 42 1 2.1770 1.0985 -2.2849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714003458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:13 Heat of formation + Delta-G solvation = -11.853068 kcal Electronic energy + Delta-G solvation = -18743.346703 eV Core-core repulsion = 16143.444552 eV Total energy + Delta-G solvation = -2599.902151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50968 -38.15148 -35.82801 -34.20772 -31.95879 -30.96535 -28.38789 -27.85588 -26.77078 -25.19999 -23.23370 -22.94541 -21.00306 -19.92992 -18.73973 -17.34598 -16.62444 -16.33815 -15.86542 -15.53559 -15.44533 -15.25838 -14.82296 -14.81515 -14.14067 -13.71516 -13.67667 -13.27866 -13.07045 -13.00424 -12.93212 -12.67011 -12.53764 -12.44340 -12.31293 -12.03773 -11.75062 -11.62736 -11.45277 -11.32624 -10.96271 -10.69090 -10.56957 -9.01122 -8.88482 -8.28960 -6.31497 1.30507 1.37244 1.49129 2.34515 3.02007 3.07313 3.31375 3.88021 4.06180 4.20100 4.27214 4.30762 4.40293 4.46288 4.51695 4.56203 4.61137 4.64220 4.71247 4.75585 4.84591 4.86044 4.88453 4.91967 5.00083 5.10031 5.10344 5.17512 5.18607 5.22286 5.29810 5.37138 5.51958 5.68238 5.79696 6.22415 6.26396 6.31907 6.44551 6.55542 6.76659 7.34201 8.88029 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.006916 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.894549 B = 4047.423292 C = 4195.906115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.069 0.931 4 C 0.074 3.926 5 N -0.548 5.548 6 C 0.032 3.968 7 C 0.029 3.971 8 N -0.518 5.518 9 C 0.068 3.932 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.023 3.977 13 H 0.021 0.979 14 C -0.517 4.517 15 H 0.031 0.969 16 C 0.013 3.987 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.300 1.300 21 H -0.250 1.250 22 C 0.091 3.909 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.046 0.954 40 H 0.265 0.735 41 H 0.015 0.985 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -6.173 20.440 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.028 4.028 3 H 0.087 0.913 4 C -0.054 4.054 5 N -0.271 5.271 6 C -0.116 4.116 7 C -0.119 4.119 8 N -0.242 5.242 9 C -0.060 4.060 10 C -0.150 4.150 11 C -0.157 4.157 12 C 0.003 3.997 13 H 0.039 0.961 14 C -0.555 4.555 15 H 0.050 0.950 16 C -0.184 4.184 17 N -0.592 5.592 18 Si 0.779 3.221 19 H -0.194 1.194 20 H -0.227 1.227 21 H -0.174 1.174 22 C -0.036 4.036 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.423 -6.420 19.878 20.893 hybrid contribution -0.733 0.375 -0.329 0.887 sum -0.310 -6.045 19.549 20.464 Atomic orbital electron populations 1.22382 0.96745 1.02635 1.02199 1.21771 0.92763 0.97783 0.90459 0.91260 1.22107 0.87733 1.00578 0.94972 1.61773 1.05585 1.12215 1.47557 1.22292 0.99655 0.89978 0.99671 1.22369 1.00868 0.97026 0.91668 1.62031 1.58558 1.02419 1.01174 1.21997 0.95565 0.89898 0.98495 1.21595 1.01218 0.98247 0.93895 1.21906 0.99854 0.97159 0.96821 1.19047 0.95748 0.92490 0.92380 0.96118 1.21370 1.32627 1.09085 0.92445 0.95036 1.25826 0.96999 1.00315 0.95225 1.70052 1.48083 1.41500 0.99594 0.85790 0.78745 0.79858 0.77708 1.19384 1.22747 1.17390 1.21719 0.96585 0.95837 0.89509 0.93935 0.91636 0.90529 0.93596 0.90270 0.95277 0.91609 0.92607 0.91243 0.91442 0.95358 0.95300 0.89292 0.92263 0.90436 0.95034 0.93509 0.92637 0.96708 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 8.44 71.98 0.61 -3.61 16 2 C 0.08 2.13 2.08 44.91 0.09 2.23 16 3 H 0.07 1.94 6.64 -2.39 -0.02 1.92 16 4 C 0.07 1.59 4.13 86.30 0.36 1.95 16 5 N -0.55 -12.86 4.74 -948.88 -4.50 -17.36 16 6 C 0.03 0.73 9.32 127.69 1.19 1.92 16 7 C 0.03 0.52 9.57 127.69 1.22 1.74 16 8 N -0.52 -17.16 4.33 -871.11 -3.77 -20.93 16 9 C 0.07 2.04 4.54 86.32 0.39 2.43 16 10 C -0.11 -3.78 6.09 30.65 0.19 -3.60 16 11 C -0.12 -5.18 4.75 30.70 0.15 -5.04 16 12 C 0.02 1.09 1.85 -11.46 -0.02 1.07 16 13 H 0.02 1.06 7.20 -2.38 -0.02 1.05 16 14 C -0.52 -30.48 9.14 25.60 0.23 -30.25 16 15 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 16 C 0.01 0.78 5.45 84.66 0.46 1.24 16 17 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 18 Si 0.95 47.15 24.36 68.60 1.67 48.82 16 19 H -0.27 -12.60 6.89 99.48 0.69 -11.91 16 20 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.25 -11.78 6.53 99.48 0.65 -11.13 16 22 C 0.09 3.78 4.36 86.32 0.38 4.16 16 23 H 0.04 1.17 6.82 -2.38 -0.02 1.15 16 24 H 0.06 1.44 6.46 -2.39 -0.02 1.43 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.08 1.58 6.59 -2.39 -0.02 1.56 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.06 1.45 6.58 -2.39 -0.02 1.44 16 31 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 33 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.03 0.86 6.58 -2.39 -0.02 0.84 16 35 H 0.09 2.25 6.33 -2.39 -0.02 2.24 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.03 1.43 3.37 -2.39 -0.01 1.42 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 41 H 0.01 0.63 6.88 -2.38 -0.02 0.61 16 42 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -66.77 306.73 -0.17 -66.94 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.88 Total: 9.10 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 5.24 Total: -25.76 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -7.97 Total: -99.10 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -66.77 -0.17 -66.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.089 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds