Wall clock time and date at job start Mon Mar 30 2020 03:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47365 * 2 1 4 4 C 1.48560 * 110.99754 * 305.41718 * 3 2 1 5 5 C 1.54374 * 104.59373 * 200.95909 * 4 3 2 6 6 H 1.09004 * 110.32140 * 264.95560 * 5 4 3 7 7 N 1.46900 * 110.32633 * 142.75211 * 5 4 3 8 8 C 1.46902 * 111.00510 * 80.20184 * 7 5 4 9 9 C 1.52990 * 109.47322 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47247 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00505 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99765 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00262 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47251 * 60.00227 * 14 12 10 16 16 H 1.48505 * 109.47204 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47509 * 300.00284 * 14 12 10 18 18 C 1.54260 * 105.06326 * 23.85345 * 5 4 3 19 19 C 1.52997 * 110.32501 * 118.89554 * 18 5 4 20 20 C 1.52994 * 110.32619 * 241.00533 * 18 5 4 21 21 C 1.48551 * 110.99903 * 189.99939 * 3 2 1 22 22 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47570 * 300.00223 * 1 2 3 24 24 H 1.09008 * 109.47172 * 60.00402 * 1 2 3 25 25 H 1.08998 * 109.46873 * 239.99501 * 2 1 3 26 26 H 1.09001 * 109.46768 * 120.00365 * 2 1 3 27 27 H 1.09007 * 110.41058 * 82.17834 * 4 3 2 28 28 H 1.08999 * 110.41146 * 319.73846 * 4 3 2 29 29 H 1.00897 * 110.99980 * 204.16634 * 7 5 4 30 30 H 1.09001 * 109.46905 * 300.00631 * 8 7 5 31 31 H 1.09001 * 109.46338 * 59.99792 * 8 7 5 32 32 H 1.08993 * 109.47475 * 300.00455 * 9 8 7 33 33 H 1.09008 * 109.47296 * 60.00678 * 9 8 7 34 34 H 0.96999 * 120.00170 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47068 * 66.25262 * 19 18 5 36 36 H 1.09004 * 109.47264 * 186.25590 * 19 18 5 37 37 H 1.08998 * 109.47132 * 306.25137 * 19 18 5 38 38 H 1.09003 * 109.47575 * 59.99607 * 20 18 5 39 39 H 1.08996 * 109.47524 * 179.97438 * 20 18 5 40 40 H 1.09000 * 109.47281 * 299.99788 * 20 18 5 41 41 H 1.09001 * 110.41269 * 40.26098 * 21 3 2 42 42 H 1.09000 * 110.51526 * 277.86792 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4394 2.1548 -1.1303 5 6 2.4054 3.3426 -1.3285 6 1 2.0454 4.2176 -0.7874 7 7 2.5504 3.6493 -2.7578 8 6 1.4150 4.4449 -3.2435 9 6 1.6011 4.7432 -4.7324 10 6 0.4360 5.5589 -5.2308 11 1 -0.3576 5.8371 -4.5531 12 6 0.3832 5.9501 -6.5519 13 7 1.3493 5.6110 -7.3772 14 14 -1.0606 6.9617 -7.1693 15 1 -1.1294 8.2385 -6.4142 16 1 -0.8807 7.2502 -8.6150 17 1 -2.3199 6.2003 -6.9700 18 6 3.7511 2.8668 -0.7434 19 6 4.8292 2.8584 -1.8289 20 6 4.1742 3.7688 0.4177 21 6 3.4848 1.4315 -0.2408 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.4427 2.5140 -0.8736 28 1 1.4029 1.5402 -2.0298 29 1 3.4249 4.1183 -2.9400 30 1 0.4908 3.8856 -3.0980 31 1 1.3640 5.3816 -2.6884 32 1 2.5253 5.3023 -4.8783 33 1 1.6518 3.8063 -5.2872 34 1 1.3119 5.8858 -8.3067 35 1 5.0299 3.8806 -2.1496 36 1 5.7426 2.4167 -1.4304 37 1 4.4834 2.2718 -2.6800 38 1 3.4150 3.7355 1.1991 39 1 5.1252 3.4204 0.8206 40 1 4.2838 4.7929 0.0610 41 1 3.7685 0.7038 -1.0011 42 1 4.0301 1.2455 0.6845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722267871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:08 Heat of formation + Delta-G solvation = -7.992535 kcal Electronic energy + Delta-G solvation = -17991.105707 eV Core-core repulsion = 15391.370961 eV Total energy + Delta-G solvation = -2599.734746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80764 -35.83913 -34.32244 -32.62306 -30.54026 -29.56458 -27.63756 -26.80015 -24.92955 -24.11034 -22.12302 -20.89094 -20.09179 -18.51430 -16.33505 -15.93627 -15.57786 -15.26561 -14.56932 -14.30891 -14.20783 -13.56145 -13.47229 -13.08585 -12.59925 -12.45842 -12.24549 -12.14474 -11.83322 -11.68430 -11.45649 -11.32294 -11.05840 -10.91285 -10.88188 -10.74868 -10.59118 -10.43373 -10.26567 -9.93175 -9.32187 -9.14102 -8.42213 -8.33989 -7.79194 -5.98664 -4.01143 3.34154 3.38402 3.40913 4.00500 4.45455 4.56416 4.72213 4.81159 5.03701 5.13627 5.18900 5.37257 5.41752 5.44273 5.49997 5.59628 5.64621 5.71478 5.76025 5.78179 5.91680 5.96971 6.03576 6.11795 6.13021 6.16992 6.25310 6.29926 6.35881 6.49340 6.50409 6.88134 7.00585 7.09077 7.53835 7.74831 7.85218 7.99075 8.10140 8.45297 9.05944 9.62549 11.12756 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.005084 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.370231 B = 5506.617122 C = 6112.622592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 N -0.513 5.513 4 C 0.044 3.956 5 C 0.089 3.911 6 H 0.047 0.953 7 N -0.686 5.686 8 C 0.065 3.935 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.069 4.069 19 C -0.139 4.139 20 C -0.134 4.134 21 C 0.046 3.954 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.340 0.660 30 H 0.056 0.944 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -8.749 15.244 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.238 5.238 4 C -0.084 4.084 5 C -0.022 4.022 6 H 0.065 0.935 7 N -0.320 5.320 8 C -0.063 4.063 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.070 4.070 19 C -0.197 4.197 20 C -0.192 4.192 21 C -0.082 4.082 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.111 -9.111 15.370 18.334 hybrid contribution -0.443 1.047 -0.832 1.409 sum 3.668 -8.064 14.538 17.024 Atomic orbital electron populations 1.21835 0.94905 1.01579 1.02704 1.22215 0.96111 0.89827 1.00551 1.65427 1.04660 1.11748 1.41923 1.23128 0.98022 0.94910 0.92348 1.22245 0.93764 0.96646 0.89571 0.93517 1.60855 1.06461 1.51261 1.13406 1.22183 0.92101 0.93111 0.98941 1.19047 0.96732 0.96886 0.88426 1.21146 1.06687 1.33482 0.94730 0.92848 1.24993 0.96128 0.96244 0.96938 1.69961 1.32411 1.46189 1.04750 0.86655 0.82966 0.80671 0.77674 1.20290 1.21272 1.20240 1.21389 0.95287 0.94764 0.95525 1.21805 0.96983 1.02247 0.98619 1.21840 1.00903 0.98815 0.97600 1.23155 0.89366 0.96021 0.99676 0.92457 0.92004 0.92248 0.94748 0.91032 0.90694 0.92357 0.83877 0.92504 0.96717 0.96920 0.95763 0.92961 0.92430 0.93144 0.90782 0.92111 0.92845 0.92861 0.93610 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.63 37.16 0.36 -1.24 16 2 C 0.04 0.46 5.78 -3.82 -0.02 0.44 16 3 N -0.51 -6.60 5.49 -229.98 -1.26 -7.86 16 4 C 0.04 0.65 4.42 -2.19 -0.01 0.64 16 5 C 0.09 1.35 2.99 -66.33 -0.20 1.15 16 6 H 0.05 0.75 7.53 -51.93 -0.39 0.36 16 7 N -0.69 -12.21 5.33 -105.27 -0.56 -12.77 16 8 C 0.06 1.38 5.46 -3.83 -0.02 1.36 16 9 C 0.03 0.70 5.23 -27.89 -0.15 0.55 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.07 -0.86 1.03 -153.13 -0.16 -1.02 16 19 C -0.14 -1.70 7.14 37.16 0.27 -1.43 16 20 C -0.13 -1.50 8.24 37.15 0.31 -1.20 16 21 C 0.05 0.55 5.59 -2.18 -0.01 0.54 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.69 6.84 -51.92 -0.36 0.33 16 25 H 0.03 0.40 7.88 -51.93 -0.41 -0.01 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 28 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 29 H 0.34 5.89 6.17 -39.29 -0.24 5.65 16 30 H 0.06 1.22 7.87 -51.93 -0.41 0.81 16 31 H 0.01 0.31 8.10 -51.93 -0.42 -0.11 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.71 7.06 -51.93 -0.37 0.34 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 42 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -29.50 324.32 -9.21 -38.71 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.94 Total: 0.46 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.05 Total: -13.88 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.09 Total: -46.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.50 -9.21 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722267871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.717 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds