Wall clock time and date at job start Mon Mar 30 2020 03:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47365 * 2 1 4 4 C 1.48560 * 110.99754 * 305.41718 * 3 2 1 5 5 C 1.54374 * 104.59373 * 200.95909 * 4 3 2 6 6 H 1.09004 * 110.32140 * 264.95560 * 5 4 3 7 7 N 1.46900 * 110.32633 * 142.75211 * 5 4 3 8 8 C 1.46902 * 111.00510 * 80.20184 * 7 5 4 9 9 C 1.52990 * 109.47322 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47247 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99853 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00505 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99765 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00262 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47251 * 60.00227 * 14 12 10 16 16 H 1.48505 * 109.47204 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47509 * 300.00284 * 14 12 10 18 18 C 1.54260 * 105.06326 * 23.85345 * 5 4 3 19 19 C 1.52997 * 110.32501 * 118.89554 * 18 5 4 20 20 C 1.52994 * 110.32619 * 241.00533 * 18 5 4 21 21 C 1.48551 * 110.99903 * 189.99939 * 3 2 1 22 22 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47570 * 300.00223 * 1 2 3 24 24 H 1.09008 * 109.47172 * 60.00402 * 1 2 3 25 25 H 1.08998 * 109.46873 * 239.99501 * 2 1 3 26 26 H 1.09001 * 109.46768 * 120.00365 * 2 1 3 27 27 H 1.09007 * 110.41058 * 82.17834 * 4 3 2 28 28 H 1.08999 * 110.41146 * 319.73846 * 4 3 2 29 29 H 1.00897 * 110.99980 * 204.16634 * 7 5 4 30 30 H 1.09001 * 109.46905 * 300.00631 * 8 7 5 31 31 H 1.09001 * 109.46338 * 59.99792 * 8 7 5 32 32 H 1.08993 * 109.47475 * 300.00455 * 9 8 7 33 33 H 1.09008 * 109.47296 * 60.00678 * 9 8 7 34 34 H 0.96999 * 120.00170 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47068 * 66.25262 * 19 18 5 36 36 H 1.09004 * 109.47264 * 186.25590 * 19 18 5 37 37 H 1.08998 * 109.47132 * 306.25137 * 19 18 5 38 38 H 1.09003 * 109.47575 * 59.99607 * 20 18 5 39 39 H 1.08996 * 109.47524 * 179.97438 * 20 18 5 40 40 H 1.09000 * 109.47281 * 299.99788 * 20 18 5 41 41 H 1.09001 * 110.41269 * 40.26098 * 21 3 2 42 42 H 1.09000 * 110.51526 * 277.86792 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4394 2.1548 -1.1303 5 6 2.4054 3.3426 -1.3285 6 1 2.0454 4.2176 -0.7874 7 7 2.5504 3.6493 -2.7578 8 6 1.4150 4.4449 -3.2435 9 6 1.6011 4.7432 -4.7324 10 6 0.4360 5.5589 -5.2308 11 1 -0.3576 5.8371 -4.5531 12 6 0.3832 5.9501 -6.5519 13 7 1.3493 5.6110 -7.3772 14 14 -1.0606 6.9617 -7.1693 15 1 -1.1294 8.2385 -6.4142 16 1 -0.8807 7.2502 -8.6150 17 1 -2.3199 6.2003 -6.9700 18 6 3.7511 2.8668 -0.7434 19 6 4.8292 2.8584 -1.8289 20 6 4.1742 3.7688 0.4177 21 6 3.4848 1.4315 -0.2408 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.4427 2.5140 -0.8736 28 1 1.4029 1.5402 -2.0298 29 1 3.4249 4.1183 -2.9400 30 1 0.4908 3.8856 -3.0980 31 1 1.3640 5.3816 -2.6884 32 1 2.5253 5.3023 -4.8783 33 1 1.6518 3.8063 -5.2872 34 1 1.3119 5.8858 -8.3067 35 1 5.0299 3.8806 -2.1496 36 1 5.7426 2.4167 -1.4304 37 1 4.4834 2.2718 -2.6800 38 1 3.4150 3.7355 1.1991 39 1 5.1252 3.4204 0.8206 40 1 4.2838 4.7929 0.0610 41 1 3.7685 0.7038 -1.0011 42 1 4.0301 1.2455 0.6845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722267871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:07 Heat of formation + Delta-G solvation = -27.483116 kcal Electronic energy + Delta-G solvation = -17991.950882 eV Core-core repulsion = 15391.370961 eV Total energy + Delta-G solvation = -2600.579921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91629 -37.18218 -35.77707 -34.53169 -31.63870 -31.20158 -28.81567 -28.04984 -26.13223 -25.73537 -23.39847 -22.45895 -21.40885 -19.63365 -18.48296 -17.05733 -16.88834 -16.50520 -16.44044 -15.58349 -15.24774 -15.01751 -14.72458 -14.37954 -14.09589 -13.62978 -13.58330 -13.32616 -13.19789 -12.87903 -12.82608 -12.65555 -12.50620 -12.36221 -12.25779 -12.05926 -11.83936 -11.72835 -11.52547 -11.42979 -11.35695 -11.09405 -10.56678 -9.46520 -9.29488 -8.20906 -6.32521 1.39667 1.42898 1.50886 2.39949 2.94068 3.12434 3.48853 3.53941 3.64682 4.01527 4.18957 4.26319 4.35672 4.40131 4.42981 4.55049 4.58760 4.59995 4.71228 4.80492 4.81217 4.85981 4.91562 4.96282 5.03690 5.06939 5.11493 5.15414 5.22829 5.28046 5.35465 5.42869 5.50136 5.66348 5.74719 5.85213 6.08511 6.15675 6.30369 6.55133 6.84206 7.36734 8.91032 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.005084 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.370231 B = 5506.617122 C = 6112.622592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 N -0.514 5.514 4 C 0.050 3.950 5 C 0.085 3.915 6 H 0.041 0.959 7 N -0.686 5.686 8 C 0.085 3.915 9 C 0.035 3.965 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.129 4.129 21 C 0.048 3.952 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.343 0.657 30 H 0.053 0.947 31 H 0.015 0.985 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -8.863 16.731 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 N -0.238 5.238 4 C -0.079 4.079 5 C -0.025 4.025 6 H 0.059 0.941 7 N -0.320 5.320 8 C -0.044 4.044 9 C -0.003 4.003 10 C -0.585 4.585 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.066 4.066 19 C -0.193 4.193 20 C -0.186 4.186 21 C -0.080 4.080 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.164 0.836 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.959 -9.235 16.879 19.644 hybrid contribution -0.350 1.029 -1.278 1.678 sum 3.608 -8.206 15.602 17.994 Atomic orbital electron populations 1.21811 0.94538 1.02508 1.01846 1.22312 0.96485 0.88859 1.01219 1.65462 1.05171 1.12686 1.40509 1.22977 0.97859 0.94708 0.92308 1.22337 0.95933 0.96636 0.87622 0.94095 1.60779 1.05375 1.50270 1.15619 1.21781 0.93306 0.93565 0.95770 1.18885 0.95297 0.94718 0.91371 1.21577 1.07474 1.33998 0.95430 0.92316 1.25956 0.99149 0.97351 0.97108 1.70097 1.34511 1.47304 1.05178 0.85487 0.79179 0.79120 0.77173 1.19126 1.20683 1.19234 1.21405 0.93670 0.95514 0.96013 1.21758 0.97821 1.01836 0.97914 1.21794 1.01837 0.98245 0.96729 1.23209 0.88946 0.95314 1.00557 0.90691 0.91912 0.93978 0.95207 0.89090 0.91273 0.94392 0.83568 0.92814 0.96639 0.99053 0.98838 0.92716 0.92813 0.90817 0.92790 0.92317 0.90746 0.93273 0.93924 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.63 71.98 0.69 -2.27 16 2 C 0.04 0.81 5.78 86.30 0.50 1.31 16 3 N -0.51 -12.48 5.49 -881.51 -4.84 -17.31 16 4 C 0.05 1.47 4.42 86.45 0.38 1.86 16 5 C 0.09 2.56 2.99 45.81 0.14 2.70 16 6 H 0.04 1.30 7.53 -2.38 -0.02 1.28 16 7 N -0.69 -24.91 5.33 -486.97 -2.59 -27.51 16 8 C 0.08 3.69 5.46 86.30 0.47 4.16 16 9 C 0.03 1.89 5.23 29.84 0.16 2.05 16 10 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.14 5.46 84.66 0.46 0.61 16 13 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 14 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 C -0.07 -1.54 1.03 -51.29 -0.05 -1.59 16 19 C -0.14 -3.17 7.14 71.98 0.51 -2.65 16 20 C -0.13 -2.59 8.24 71.98 0.59 -2.00 16 21 C 0.05 1.05 5.59 86.45 0.48 1.53 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 0.97 6.84 -2.38 -0.02 0.95 16 25 H 0.03 0.65 7.88 -2.39 -0.02 0.63 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 2.08 7.67 -2.38 -0.02 2.06 16 28 H 0.04 1.26 7.91 -2.39 -0.02 1.24 16 29 H 0.34 12.11 6.17 -89.70 -0.55 11.56 16 30 H 0.05 2.36 7.87 -2.39 -0.02 2.34 16 31 H 0.02 0.67 8.10 -2.39 -0.02 0.65 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 33 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.05 1.29 7.06 -2.39 -0.02 1.27 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.97 7.54 -2.39 -0.02 0.96 16 42 H 0.10 1.76 7.86 -2.39 -0.02 1.74 16 Total: -1.00 -63.54 324.32 -0.15 -63.70 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.40 Total: 17.33 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.57 Total: -25.83 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -7.15 Total: -101.92 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.54 -0.15 -63.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722267871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.212 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds