Wall clock time and date at job start Mon Mar 30 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46589 * 2 1 4 4 C 1.48562 * 111.00387 * 69.87485 * 3 2 1 5 5 C 1.54373 * 104.70213 * 159.09577 * 4 3 2 6 6 H 1.09002 * 110.32431 * 94.97982 * 5 4 3 7 7 N 1.46901 * 110.32514 * 217.08941 * 5 4 3 8 8 C 1.46903 * 110.99909 * 282.40492 * 7 5 4 9 9 H 1.09004 * 109.46782 * 34.99847 * 8 7 5 10 10 C 1.53001 * 109.46931 * 274.99663 * 8 7 5 11 11 C 1.50694 * 109.47126 * 154.99742 * 8 7 5 12 12 H 1.08003 * 120.00355 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00073 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99990 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99946 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47153 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47190 * 119.99930 * 15 13 11 18 18 H 1.48507 * 109.46732 * 239.99629 * 15 13 11 19 19 C 1.54256 * 105.06156 * 336.08607 * 5 4 3 20 20 C 1.53004 * 110.32458 * 118.89327 * 19 5 4 21 21 C 1.52998 * 110.32718 * 241.10705 * 19 5 4 22 22 C 1.48856 * 111.13200 * 185.19164 * 3 2 1 23 23 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47817 * 300.00200 * 1 2 3 25 25 H 1.09008 * 109.47055 * 60.00441 * 1 2 3 26 26 H 1.09001 * 109.47364 * 240.00028 * 2 1 3 27 27 H 1.08997 * 109.46583 * 119.99405 * 2 1 3 28 28 H 1.09001 * 110.40675 * 40.25275 * 4 3 2 29 29 H 1.09001 * 110.40777 * 277.93666 * 4 3 2 30 30 H 1.00898 * 111.00245 * 158.44906 * 7 5 4 31 31 H 1.08997 * 109.46596 * 179.97438 * 10 8 7 32 32 H 1.08995 * 109.47607 * 300.00340 * 10 8 7 33 33 H 1.09004 * 109.46977 * 60.00244 * 10 8 7 34 34 H 0.97003 * 120.00149 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.46873 * 60.00637 * 20 19 5 36 36 H 1.09004 * 109.46899 * 180.02562 * 20 19 5 37 37 H 1.08997 * 109.47154 * 300.00371 * 20 19 5 38 38 H 1.08997 * 109.47598 * 54.03358 * 21 19 5 39 39 H 1.08996 * 109.47315 * 174.03899 * 21 19 5 40 40 H 1.09002 * 109.46842 * 294.03570 * 21 19 5 41 41 H 1.09003 * 110.39425 * 82.21373 * 22 3 2 42 42 H 1.09006 * 110.49571 * 319.84822 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7471 2.0461 1.3022 5 6 2.7431 3.2242 1.3595 6 1 2.2686 4.1387 1.0035 7 7 3.2382 3.4075 2.7304 8 6 2.2392 4.0892 3.5642 9 1 1.2397 3.7736 3.2647 10 6 2.3717 5.6028 3.3840 11 6 2.4657 3.7338 5.0110 12 1 3.2709 3.0678 5.2839 13 6 1.6442 4.2580 5.9864 14 7 0.6633 5.0686 5.6542 15 14 1.9254 3.8180 7.7800 16 1 3.0844 2.8959 7.8876 17 1 2.2019 5.0539 8.5554 18 1 0.7129 3.1540 8.3226 19 6 3.8977 2.8190 0.4202 20 6 4.0272 3.8235 -0.7266 21 6 5.2108 2.7291 1.2003 22 6 3.5022 1.4302 -0.1256 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9286 1.3545 2.1249 29 1 0.7214 2.4135 1.3347 30 1 4.1146 3.9076 2.7345 31 1 1.6301 6.1084 4.0024 32 1 3.3711 5.9183 3.6834 33 1 2.2078 5.8598 2.3375 34 1 0.0851 5.4371 6.3404 35 1 4.2302 4.8144 -0.3205 36 1 4.8457 3.5240 -1.3812 37 1 3.0977 3.8474 -1.2954 38 1 5.0823 2.0617 2.0524 39 1 5.9942 2.3409 0.5495 40 1 5.4914 3.7210 1.5548 41 1 3.7979 1.3340 -1.1703 42 1 3.9601 0.6422 0.4724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722270970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:09 Heat of formation + Delta-G solvation = -0.938763 kcal Electronic energy + Delta-G solvation = -18579.456845 eV Core-core repulsion = 15980.027974 eV Total energy + Delta-G solvation = -2599.428871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51425 -35.72847 -34.32561 -32.05770 -30.40159 -28.82937 -27.32450 -25.98567 -25.10808 -24.72458 -22.19076 -20.78961 -19.59248 -18.36822 -16.34866 -15.51533 -15.34020 -14.68631 -14.65810 -14.11121 -13.87426 -13.34820 -13.02183 -12.67492 -12.35348 -12.24237 -12.14544 -11.87063 -11.63371 -11.35861 -11.24197 -11.09945 -10.96293 -10.81163 -10.66662 -10.60011 -10.33751 -10.20121 -10.15157 -10.02130 -9.65547 -8.92709 -8.33793 -8.20328 -7.18956 -5.96141 -3.99126 3.32077 3.39924 3.44963 4.23780 4.46479 4.81903 4.97938 5.13979 5.23285 5.35545 5.40383 5.49538 5.61615 5.68244 5.75074 5.82155 5.88126 5.92028 5.98447 6.00615 6.09720 6.16928 6.28036 6.32754 6.36175 6.48704 6.52657 6.61742 6.72004 6.72978 6.87357 7.08625 7.15407 7.33266 7.48092 7.77396 7.92690 8.32479 8.58686 8.67184 9.08654 9.66267 11.10878 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.006935 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.861968 B = 4036.505641 C = 4590.429729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 N -0.514 5.514 4 C 0.047 3.953 5 C 0.093 3.907 6 H 0.042 0.958 7 N -0.678 5.678 8 C 0.210 3.790 9 H 0.033 0.967 10 C -0.168 4.168 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.069 4.069 20 C -0.132 4.132 21 C -0.134 4.134 22 C 0.047 3.953 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.329 0.671 31 H 0.088 0.912 32 H 0.026 0.974 33 H 0.004 0.996 34 H 0.258 0.742 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -5.982 -11.633 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.239 5.239 4 C -0.081 4.081 5 C -0.018 4.018 6 H 0.059 0.941 7 N -0.311 5.311 8 C 0.102 3.898 9 H 0.051 0.949 10 C -0.228 4.228 11 C -0.531 4.531 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.070 4.070 20 C -0.190 4.190 21 C -0.191 4.191 22 C -0.081 4.081 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.732 -6.259 -11.782 13.853 hybrid contribution 0.416 0.362 1.365 1.472 sum 4.147 -5.898 -10.417 12.669 Atomic orbital electron populations 1.21735 0.94956 1.01093 1.02640 1.22182 0.96284 0.89914 1.00314 1.65484 1.11023 1.15060 1.32313 1.23125 0.99286 0.96227 0.89472 1.22135 0.93289 0.96373 0.90039 0.94056 1.61048 1.07000 1.55774 1.07233 1.19181 0.90662 0.87936 0.91986 0.94874 1.22421 1.01179 1.02012 0.97163 1.21198 1.14428 1.26965 0.90555 0.92027 1.24946 0.95320 0.95319 0.98969 1.69895 1.18372 1.32495 1.32931 0.86494 0.78006 0.78073 0.85128 1.19808 1.21238 1.21205 1.21375 0.95819 0.94619 0.95196 1.21825 1.01428 0.98284 0.97452 1.21756 0.94996 1.02274 1.00114 1.23157 0.88510 0.96346 1.00098 0.92739 0.92377 0.92160 0.91445 0.94739 0.92348 0.90918 0.85144 0.89352 0.95496 0.97660 0.93191 0.92996 0.93163 0.92224 0.90820 0.93688 0.92656 0.90968 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.97 37.16 0.37 -1.44 16 2 C 0.04 0.55 5.54 -3.82 -0.02 0.53 16 3 N -0.51 -7.81 5.38 -229.71 -1.24 -9.05 16 4 C 0.05 0.84 4.76 -2.18 -0.01 0.83 16 5 C 0.09 1.69 2.85 -66.34 -0.19 1.50 16 6 H 0.04 0.82 6.81 -51.93 -0.35 0.46 16 7 N -0.68 -14.11 5.01 -99.51 -0.50 -14.60 16 8 C 0.21 5.24 2.43 -68.87 -0.17 5.07 16 9 H 0.03 0.91 7.37 -51.93 -0.38 0.53 16 10 C -0.17 -4.08 8.93 37.16 0.33 -3.75 16 11 C -0.49 -13.58 8.84 -34.44 -0.30 -13.89 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 14 N -0.90 -25.76 11.32 55.43 0.63 -25.13 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.07 -1.02 1.03 -153.13 -0.16 -1.18 16 20 C -0.13 -1.75 8.23 37.16 0.31 -1.44 16 21 C -0.13 -1.87 7.18 37.16 0.27 -1.61 16 22 C 0.05 0.66 5.59 -2.02 -0.01 0.65 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.80 7.25 -51.93 -0.38 0.42 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.03 0.48 7.88 -51.93 -0.41 0.07 16 28 H 0.06 1.16 7.74 -51.93 -0.40 0.75 16 29 H 0.07 1.37 7.76 -51.93 -0.40 0.97 16 30 H 0.33 6.55 6.08 -39.29 -0.24 6.32 16 31 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 32 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.00 0.10 7.38 -51.93 -0.38 -0.28 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.78 7.05 -51.93 -0.37 0.41 16 41 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 42 H 0.04 0.62 7.72 -51.93 -0.40 0.22 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -27.84 319.01 -8.76 -36.60 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.76 Total: 4.11 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.32 Total: -13.30 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -1.11 Total: -48.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.84 -8.76 -36.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.659 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds