Wall clock time and date at job start Mon Mar 30 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47360 * 2 1 4 4 C 1.48566 * 110.99515 * 290.12408 * 3 2 1 5 5 C 1.54387 * 104.59252 * 200.96025 * 4 3 2 6 6 H 1.09000 * 110.32097 * 264.85685 * 5 4 3 7 7 N 1.46895 * 110.32460 * 142.74879 * 5 4 3 8 8 C 1.46899 * 110.99970 * 81.15180 * 7 5 4 9 9 H 1.08999 * 109.47404 * 34.99518 * 8 7 5 10 10 C 1.53004 * 109.46991 * 275.00051 * 8 7 5 11 11 C 1.50698 * 109.47378 * 154.99969 * 8 7 5 12 12 H 1.08005 * 119.99828 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00096 * 180.02562 * 11 8 7 14 14 N 1.31504 * 119.99999 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99748 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47273 * 59.99676 * 15 13 11 17 17 H 1.48499 * 109.46684 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46945 * 299.99262 * 15 13 11 19 19 C 1.54259 * 105.05784 * 23.85268 * 5 4 3 20 20 C 1.52997 * 110.32378 * 118.89908 * 19 5 4 21 21 C 1.53007 * 110.32225 * 241.10311 * 19 5 4 22 22 C 1.48565 * 111.00160 * 174.70688 * 3 2 1 23 23 H 1.08998 * 109.47163 * 299.99966 * 1 2 3 24 24 H 1.09002 * 109.47011 * 60.00275 * 1 2 3 25 25 H 1.09004 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47142 * 239.99247 * 2 1 3 27 27 H 1.09002 * 109.47011 * 119.99725 * 2 1 3 28 28 H 1.08999 * 110.41187 * 82.18592 * 4 3 2 29 29 H 1.08994 * 110.51427 * 319.78788 * 4 3 2 30 30 H 1.00898 * 111.00049 * 205.10412 * 7 5 4 31 31 H 1.08996 * 109.47313 * 299.99771 * 10 8 7 32 32 H 1.09002 * 109.47409 * 60.00404 * 10 8 7 33 33 H 1.09004 * 109.47023 * 180.02562 * 10 8 7 34 34 H 0.97007 * 120.00280 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.46883 * 66.43026 * 20 19 5 36 36 H 1.09000 * 109.47485 * 186.43341 * 20 19 5 37 37 H 1.08994 * 109.47158 * 306.43521 * 20 19 5 38 38 H 1.09000 * 109.46996 * 60.00259 * 21 19 5 39 39 H 1.09001 * 109.46957 * 180.02562 * 21 19 5 40 40 H 1.08993 * 109.47495 * 300.00301 * 21 19 5 41 41 H 1.08998 * 110.41019 * 277.81557 * 22 3 2 42 42 H 1.09003 * 110.41046 * 40.26068 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7473 2.0459 -1.3024 5 6 2.7454 3.2223 -1.3578 6 1 2.2715 4.1379 -1.0040 7 7 3.2447 3.4037 -2.7274 8 6 2.2846 4.1603 -3.5419 9 1 1.7892 4.9063 -2.9204 10 6 1.2401 3.2030 -4.1196 11 6 3.0129 4.8479 -4.6678 12 1 4.0822 4.7338 -4.7685 13 6 2.3143 5.6226 -5.5694 14 7 1.0123 5.7610 -5.4471 15 14 3.2171 6.4743 -6.9655 16 1 3.8909 5.4575 -7.8125 17 1 2.2464 7.2392 -7.7888 18 1 4.2316 7.4028 -6.4052 19 6 3.8979 2.8148 -0.4169 20 6 5.2120 2.7230 -1.1951 21 6 4.0275 3.8188 0.7304 22 6 3.4993 1.4265 0.1279 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.7223 2.4152 -1.3341 29 1 1.9274 1.3554 -2.1262 30 1 4.1493 3.8508 -2.7262 31 1 1.7352 2.4570 -4.7411 32 1 0.7131 2.7057 -3.3052 33 1 0.5278 3.7644 -4.7244 34 1 0.5208 6.3063 -6.0812 35 1 5.4991 3.7157 -1.5417 36 1 5.9918 2.3252 -0.5457 37 1 5.0813 2.0626 -2.0523 38 1 3.0972 3.8441 1.2978 39 1 4.8451 3.5182 1.3856 40 1 4.2328 4.8094 0.3249 41 1 3.7933 1.3295 1.1730 42 1 3.9549 0.6379 -0.4709 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722270971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:11 Heat of formation + Delta-G solvation = 0.518847 kcal Electronic energy + Delta-G solvation = -18606.855165 eV Core-core repulsion = 16007.489500 eV Total energy + Delta-G solvation = -2599.365665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55449 -35.66172 -34.35185 -32.07176 -30.41449 -28.68582 -27.46311 -26.42524 -24.98805 -24.68767 -22.09273 -20.42904 -19.78236 -18.36402 -16.50015 -15.59348 -15.26402 -14.73742 -14.58229 -14.11757 -13.90370 -13.28891 -13.21395 -12.73075 -12.50108 -12.29999 -12.09629 -11.84211 -11.57272 -11.28966 -11.22396 -10.98448 -10.93111 -10.77259 -10.65711 -10.50702 -10.39360 -10.30658 -10.02572 -9.99148 -9.65154 -8.78230 -8.44034 -8.21220 -7.25784 -6.00685 -4.07299 3.31329 3.35928 3.38453 4.22729 4.41765 4.81349 4.97722 5.13606 5.21386 5.30695 5.38300 5.48963 5.58815 5.67911 5.74085 5.81580 5.88099 5.90089 5.98661 6.00692 6.07987 6.17701 6.26810 6.29759 6.36004 6.48414 6.50658 6.62988 6.71183 6.89576 7.08731 7.19204 7.30059 7.33492 7.55869 7.79787 7.93627 8.30573 8.43409 8.71332 9.03751 9.58579 11.05365 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.006598 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.235643 B = 4242.713109 C = 4898.002047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.516 5.516 4 C 0.049 3.951 5 C 0.093 3.907 6 H 0.044 0.956 7 N -0.684 5.684 8 C 0.211 3.789 9 H 0.000 1.000 10 C -0.127 4.127 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.070 4.070 20 C -0.136 4.136 21 C -0.133 4.133 22 C 0.047 3.953 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.336 0.664 31 H 0.028 0.972 32 H 0.009 0.991 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -8.181 10.834 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.240 5.240 4 C -0.079 4.079 5 C -0.019 4.019 6 H 0.061 0.939 7 N -0.318 5.318 8 C 0.104 3.896 9 H 0.018 0.982 10 C -0.185 4.185 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.071 4.071 20 C -0.193 4.193 21 C -0.190 4.190 22 C -0.081 4.081 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.523 -8.431 10.962 14.058 hybrid contribution 0.835 0.914 -1.165 1.700 sum 3.358 -7.517 9.797 12.797 Atomic orbital electron populations 1.21735 0.94976 1.01072 1.02630 1.22179 0.96266 0.89954 1.00283 1.65415 1.11117 1.15031 1.32480 1.23261 0.99316 0.96152 0.89186 1.22231 0.93221 0.96523 0.89898 0.93858 1.60967 1.06780 1.55877 1.08161 1.19129 0.89707 0.89556 0.91226 0.98209 1.21807 0.99534 0.98453 0.98713 1.21228 0.94074 1.28732 1.11686 0.92437 1.24909 0.94862 0.96412 0.97764 1.69888 1.06340 1.39565 1.37022 0.86607 0.79367 0.79549 0.82132 1.20255 1.21321 1.20361 1.21398 0.95800 0.94612 0.95297 1.21776 0.95088 1.02359 1.00109 1.21826 1.01409 0.98385 0.97404 1.23109 0.88499 0.96349 1.00129 0.92110 0.92458 0.92741 0.94841 0.91432 0.90827 0.92510 0.84358 0.95297 0.97159 0.90363 0.92915 0.92412 0.93592 0.90939 0.92218 0.93171 0.92849 0.90922 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.97 37.16 0.37 -1.38 16 2 C 0.04 0.54 5.53 -3.83 -0.02 0.52 16 3 N -0.52 -7.74 5.37 -229.97 -1.24 -8.98 16 4 C 0.05 0.86 3.60 -2.17 -0.01 0.85 16 5 C 0.09 1.70 2.98 -66.33 -0.20 1.51 16 6 H 0.04 0.88 7.18 -51.93 -0.37 0.51 16 7 N -0.68 -14.40 5.20 -99.51 -0.52 -14.92 16 8 C 0.21 5.34 2.60 -68.86 -0.18 5.16 16 9 H 0.00 0.01 7.53 -51.93 -0.39 -0.38 16 10 C -0.13 -3.15 8.85 37.16 0.33 -2.82 16 11 C -0.52 -14.22 8.59 -34.44 -0.30 -14.52 16 12 H 0.06 1.55 7.62 -52.48 -0.40 1.15 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.07 -1.05 1.03 -153.13 -0.16 -1.21 16 20 C -0.14 -1.92 7.13 37.16 0.27 -1.66 16 21 C -0.13 -1.80 8.24 37.16 0.31 -1.49 16 22 C 0.05 0.66 5.58 -2.18 -0.01 0.65 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.76 7.26 -51.93 -0.38 0.38 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.03 0.45 7.88 -51.93 -0.41 0.04 16 27 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.07 1.36 7.03 -51.93 -0.37 1.00 16 29 H 0.06 1.08 7.41 -51.93 -0.38 0.69 16 30 H 0.34 6.92 5.61 -39.29 -0.22 6.70 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.22 5.44 -51.93 -0.28 -0.07 16 33 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 42 H 0.04 0.60 7.72 -51.93 -0.40 0.20 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -27.86 314.77 -8.70 -36.56 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.60 Total: 3.96 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 0.30 Total: -12.76 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -1.13 Total: -48.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.86 -8.70 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.081 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds