Wall clock time and date at job start Mon Mar 30 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47053 * 2 1 4 4 C 1.48561 * 110.99916 * 54.57921 * 3 2 1 5 5 C 1.54376 * 104.59237 * 159.04320 * 4 3 2 6 6 H 1.08997 * 110.32933 * 95.04148 * 5 4 3 7 7 N 1.46906 * 110.40594 * 217.20402 * 5 4 3 8 8 C 1.46895 * 111.00237 * 270.68185 * 7 5 4 9 9 H 1.08998 * 109.47346 * 325.01008 * 8 7 5 10 10 C 1.53006 * 109.46536 * 85.00091 * 8 7 5 11 11 C 1.50691 * 109.47523 * 205.00058 * 8 7 5 12 12 H 1.08007 * 119.99933 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00138 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00098 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99959 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47228 * 89.99741 * 15 13 11 17 17 H 1.48495 * 109.47256 * 209.99726 * 15 13 11 18 18 H 1.48495 * 109.47368 * 330.00070 * 15 13 11 19 19 C 1.54262 * 105.06046 * 336.14271 * 5 4 3 20 20 C 1.53002 * 110.32565 * 241.10431 * 19 5 4 21 21 C 1.53003 * 110.40856 * 118.94421 * 19 5 4 22 22 C 1.48553 * 110.99831 * 169.99560 * 3 2 1 23 23 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47142 * 300.00160 * 1 2 3 25 25 H 1.09004 * 109.47006 * 60.00213 * 1 2 3 26 26 H 1.08992 * 109.47056 * 239.99670 * 2 1 3 27 27 H 1.09004 * 109.47006 * 119.99787 * 2 1 3 28 28 H 1.09003 * 110.41046 * 277.81794 * 4 3 2 29 29 H 1.08997 * 110.41438 * 40.26378 * 4 3 2 30 30 H 1.00909 * 110.99498 * 146.73593 * 7 5 4 31 31 H 1.09002 * 109.46888 * 179.97438 * 10 8 7 32 32 H 1.08993 * 109.47136 * 300.00161 * 10 8 7 33 33 H 1.09008 * 109.47065 * 60.00537 * 10 8 7 34 34 H 0.97000 * 119.99841 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47016 * 177.09431 * 20 19 5 36 36 H 1.09004 * 109.47183 * 297.09720 * 20 19 5 37 37 H 1.09005 * 109.46777 * 57.09264 * 20 19 5 38 38 H 1.09001 * 109.46889 * 302.85781 * 21 19 5 39 39 H 1.08996 * 109.47247 * 62.85463 * 21 19 5 40 40 H 1.08996 * 109.47174 * 182.86069 * 21 19 5 41 41 H 1.08997 * 110.41663 * 319.74149 * 22 3 2 42 42 H 1.09004 * 110.40990 * 82.18319 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4393 2.1549 1.1302 5 6 2.4052 3.3427 1.3284 6 1 2.0454 4.2178 0.7872 7 7 2.5507 3.6518 2.7572 8 6 1.5371 4.6221 3.1918 9 1 1.3404 5.3281 2.3850 10 6 0.2455 3.8844 3.5502 11 6 2.0413 5.3681 4.4002 12 1 3.0174 5.1440 4.8047 13 6 1.2566 6.3366 4.9895 14 7 0.0683 6.6098 4.4967 15 14 1.8820 7.2617 6.4870 16 1 2.6159 8.4758 6.0480 17 1 0.7325 7.6593 7.3389 18 1 2.7947 6.3857 7.2646 19 6 3.7509 2.8669 0.7434 20 6 4.8291 2.8586 1.8290 21 6 4.1754 3.7668 -0.4189 22 6 3.4848 1.4317 0.2409 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.4427 2.5141 0.8735 29 1 1.4028 1.5405 2.0298 30 1 3.4810 3.9844 2.9623 31 1 -0.5065 4.6044 3.8731 32 1 -0.1192 3.3449 2.6761 33 1 0.4421 3.1784 4.3571 34 1 -0.4839 7.2909 4.9116 35 1 5.7598 2.4719 1.4137 36 1 4.9874 3.8743 2.1917 37 1 4.5082 2.2238 2.6549 38 1 3.3935 3.7725 -1.1783 39 1 4.3344 4.7814 -0.0537 40 1 5.1006 3.3876 -0.8529 41 1 3.7685 0.7040 1.0012 42 1 4.0285 1.2464 -0.6855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722270973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:15 Heat of formation + Delta-G solvation = 2.125493 kcal Electronic energy + Delta-G solvation = -18615.244625 eV Core-core repulsion = 16015.948630 eV Total energy + Delta-G solvation = -2599.295995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.58871 -35.72524 -34.34533 -32.05736 -30.34296 -28.75971 -27.51663 -26.36219 -25.00841 -24.67056 -22.21494 -20.32565 -19.79597 -18.33392 -16.53586 -15.62137 -15.35352 -14.73826 -14.57764 -14.05308 -13.98681 -13.28490 -13.23280 -12.72339 -12.46404 -12.30828 -12.07558 -11.85002 -11.53336 -11.28587 -11.20686 -11.00726 -10.97435 -10.79638 -10.73649 -10.49047 -10.36578 -10.29573 -10.02951 -10.00247 -9.66680 -8.77104 -8.44394 -8.21328 -7.25091 -6.00928 -4.07400 3.29501 3.36344 3.39941 4.22509 4.41760 4.79303 4.97754 5.13646 5.22414 5.30526 5.31894 5.48105 5.56768 5.66777 5.73580 5.81537 5.86855 5.88869 5.96009 5.99579 6.08645 6.18145 6.25684 6.26998 6.34688 6.48081 6.49929 6.61283 6.68371 6.90208 7.08565 7.19977 7.30189 7.32281 7.56233 7.80079 7.93917 8.30860 8.44253 8.71982 9.04083 9.58560 11.05197 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.006588 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.998778 B = 4249.381662 C = 4875.945927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 N -0.516 5.516 4 C 0.049 3.951 5 C 0.092 3.908 6 H 0.048 0.952 7 N -0.686 5.686 8 C 0.211 3.789 9 H 0.001 0.999 10 C -0.125 4.125 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.073 4.073 20 C -0.138 4.138 21 C -0.132 4.132 22 C 0.047 3.953 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.337 0.663 31 H 0.078 0.922 32 H 0.007 0.993 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -9.758 -8.582 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 N -0.240 5.240 4 C -0.079 4.079 5 C -0.019 4.019 6 H 0.066 0.934 7 N -0.321 5.321 8 C 0.104 3.896 9 H 0.018 0.982 10 C -0.183 4.183 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.074 4.074 20 C -0.196 4.196 21 C -0.190 4.190 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.437 -9.957 -8.852 14.042 hybrid contribution 0.702 0.951 1.226 1.703 sum 5.139 -9.006 -7.626 12.871 Atomic orbital electron populations 1.21831 0.95017 1.01338 1.02792 1.22192 0.96041 0.90115 1.00256 1.65445 1.04609 1.11443 1.42535 1.23213 0.98175 0.94891 0.91606 1.22261 0.92665 0.96407 0.90600 0.93444 1.60978 1.08738 1.49730 1.12682 1.19156 0.88677 0.87347 0.94468 0.98179 1.21756 1.00045 0.99196 0.97309 1.21264 1.02524 1.18819 1.13038 0.92408 1.24913 0.94875 0.96873 0.97312 1.69902 1.09725 1.32358 1.40820 0.86551 0.78364 0.79996 0.82800 1.20788 1.21228 1.19900 1.21452 0.95847 0.94610 0.95488 1.21808 0.96935 1.02370 0.98453 1.21821 1.00622 0.98987 0.97569 1.23135 0.89493 0.96123 0.99351 0.92648 0.92201 0.92021 0.91263 0.94990 0.90800 0.92688 0.84084 0.90339 0.97394 0.95270 0.92974 0.93367 0.92102 0.91227 0.92201 0.92798 0.93162 0.93908 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.63 37.16 0.36 -1.47 16 2 C 0.04 0.54 5.78 -3.82 -0.02 0.52 16 3 N -0.52 -7.69 5.49 -229.98 -1.26 -8.95 16 4 C 0.05 0.85 3.38 -2.18 -0.01 0.85 16 5 C 0.09 1.70 3.02 -66.33 -0.20 1.50 16 6 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 7 N -0.69 -14.50 5.48 -99.51 -0.55 -15.04 16 8 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 9 H 0.00 0.02 7.43 -51.93 -0.39 -0.37 16 10 C -0.12 -3.11 9.00 37.16 0.33 -2.77 16 11 C -0.52 -14.21 8.59 -34.44 -0.30 -14.50 16 12 H 0.06 1.56 7.62 -52.48 -0.40 1.16 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 15 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.07 -1.09 1.03 -153.12 -0.16 -1.25 16 20 C -0.14 -1.96 7.08 37.16 0.26 -1.70 16 21 C -0.13 -1.81 8.24 37.16 0.31 -1.51 16 22 C 0.05 0.66 5.58 -2.19 -0.01 0.64 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.80 6.84 -51.93 -0.36 0.44 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.41 7.88 -51.93 -0.41 0.00 16 28 H 0.07 1.34 6.93 -51.93 -0.36 0.98 16 29 H 0.05 1.02 7.91 -51.93 -0.41 0.61 16 30 H 0.34 6.95 5.04 -39.29 -0.20 6.75 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.01 0.16 6.06 -51.93 -0.31 -0.15 16 33 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.91 6.87 -51.93 -0.36 0.55 16 37 H 0.07 1.06 7.66 -51.93 -0.40 0.67 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.59 7.54 -51.93 -0.39 0.20 16 42 H 0.07 0.91 7.86 -51.93 -0.41 0.51 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -27.95 314.54 -8.75 -36.71 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.58 Total: 4.08 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 0.29 Total: -12.91 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.18 Total: -48.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.95 -8.75 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.832 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds