Wall clock time and date at job start Mon Mar 30 2020 03:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47053 * 2 1 4 4 C 1.48561 * 110.99916 * 54.57921 * 3 2 1 5 5 C 1.54376 * 104.59237 * 159.04320 * 4 3 2 6 6 H 1.08997 * 110.32933 * 95.04148 * 5 4 3 7 7 N 1.46906 * 110.40594 * 217.20402 * 5 4 3 8 8 C 1.46895 * 111.00237 * 270.68185 * 7 5 4 9 9 H 1.08998 * 109.47346 * 325.01008 * 8 7 5 10 10 C 1.53006 * 109.46536 * 85.00091 * 8 7 5 11 11 C 1.50691 * 109.47523 * 205.00058 * 8 7 5 12 12 H 1.08007 * 119.99933 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00138 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00098 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99959 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47228 * 89.99741 * 15 13 11 17 17 H 1.48495 * 109.47256 * 209.99726 * 15 13 11 18 18 H 1.48495 * 109.47368 * 330.00070 * 15 13 11 19 19 C 1.54262 * 105.06046 * 336.14271 * 5 4 3 20 20 C 1.53002 * 110.32565 * 241.10431 * 19 5 4 21 21 C 1.53003 * 110.40856 * 118.94421 * 19 5 4 22 22 C 1.48553 * 110.99831 * 169.99560 * 3 2 1 23 23 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47142 * 300.00160 * 1 2 3 25 25 H 1.09004 * 109.47006 * 60.00213 * 1 2 3 26 26 H 1.08992 * 109.47056 * 239.99670 * 2 1 3 27 27 H 1.09004 * 109.47006 * 119.99787 * 2 1 3 28 28 H 1.09003 * 110.41046 * 277.81794 * 4 3 2 29 29 H 1.08997 * 110.41438 * 40.26378 * 4 3 2 30 30 H 1.00909 * 110.99498 * 146.73593 * 7 5 4 31 31 H 1.09002 * 109.46888 * 179.97438 * 10 8 7 32 32 H 1.08993 * 109.47136 * 300.00161 * 10 8 7 33 33 H 1.09008 * 109.47065 * 60.00537 * 10 8 7 34 34 H 0.97000 * 119.99841 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47016 * 177.09431 * 20 19 5 36 36 H 1.09004 * 109.47183 * 297.09720 * 20 19 5 37 37 H 1.09005 * 109.46777 * 57.09264 * 20 19 5 38 38 H 1.09001 * 109.46889 * 302.85781 * 21 19 5 39 39 H 1.08996 * 109.47247 * 62.85463 * 21 19 5 40 40 H 1.08996 * 109.47174 * 182.86069 * 21 19 5 41 41 H 1.08997 * 110.41663 * 319.74149 * 22 3 2 42 42 H 1.09004 * 110.40990 * 82.18319 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4393 2.1549 1.1302 5 6 2.4052 3.3427 1.3284 6 1 2.0454 4.2178 0.7872 7 7 2.5507 3.6518 2.7572 8 6 1.5371 4.6221 3.1918 9 1 1.3404 5.3281 2.3850 10 6 0.2455 3.8844 3.5502 11 6 2.0413 5.3681 4.4002 12 1 3.0174 5.1440 4.8047 13 6 1.2566 6.3366 4.9895 14 7 0.0683 6.6098 4.4967 15 14 1.8820 7.2617 6.4870 16 1 2.6159 8.4758 6.0480 17 1 0.7325 7.6593 7.3389 18 1 2.7947 6.3857 7.2646 19 6 3.7509 2.8669 0.7434 20 6 4.8291 2.8586 1.8290 21 6 4.1754 3.7668 -0.4189 22 6 3.4848 1.4317 0.2409 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.4427 2.5141 0.8735 29 1 1.4028 1.5405 2.0298 30 1 3.4810 3.9844 2.9623 31 1 -0.5065 4.6044 3.8731 32 1 -0.1192 3.3449 2.6761 33 1 0.4421 3.1784 4.3571 34 1 -0.4839 7.2909 4.9116 35 1 5.7598 2.4719 1.4137 36 1 4.9874 3.8743 2.1917 37 1 4.5082 2.2238 2.6549 38 1 3.3935 3.7725 -1.1783 39 1 4.3344 4.7814 -0.0537 40 1 5.1006 3.3876 -0.8529 41 1 3.7685 0.7040 1.0012 42 1 4.0285 1.2464 -0.6855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722270973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:14 Heat of formation + Delta-G solvation = -16.297681 kcal Electronic energy + Delta-G solvation = -18616.043514 eV Core-core repulsion = 16015.948630 eV Total energy + Delta-G solvation = -2600.094884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90254 -37.31932 -35.83319 -33.96153 -31.46630 -30.51788 -28.84930 -27.80523 -27.03128 -25.83972 -23.54542 -21.77357 -21.50761 -19.72109 -18.43693 -17.07378 -16.73059 -16.48823 -16.09291 -15.40456 -15.22580 -14.96261 -14.52739 -14.38014 -13.81165 -13.57049 -13.31062 -13.20776 -13.04485 -12.81590 -12.79787 -12.58288 -12.48722 -12.24719 -12.22813 -12.06160 -11.96239 -11.81801 -11.60884 -11.44644 -11.24751 -10.80911 -10.55680 -9.41418 -9.05596 -8.13287 -6.27945 1.41058 1.42198 1.52901 2.40721 3.03260 3.15467 3.57223 3.68796 3.78748 4.06600 4.22343 4.28984 4.41745 4.44583 4.52886 4.62293 4.73588 4.80659 4.82777 4.83363 4.87654 4.95250 4.98003 5.05295 5.08870 5.15184 5.17463 5.23237 5.26271 5.30309 5.36681 5.46460 5.51694 5.67340 5.84267 5.92476 6.15359 6.23272 6.50530 6.80927 7.03014 7.42799 8.92315 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.006588 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.998778 B = 4249.381662 C = 4875.945927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 N -0.520 5.520 4 C 0.061 3.939 5 C 0.086 3.914 6 H 0.021 0.979 7 N -0.679 5.679 8 C 0.218 3.782 9 H -0.037 1.037 10 C -0.110 4.110 11 C -0.537 4.537 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.963 3.037 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.128 4.128 22 C 0.051 3.949 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.340 0.660 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -10.974 -9.021 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 N -0.244 5.244 4 C -0.068 4.068 5 C -0.026 4.026 6 H 0.039 0.961 7 N -0.314 5.314 8 C 0.109 3.891 9 H -0.019 1.019 10 C -0.169 4.169 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.788 3.212 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.071 4.071 20 C -0.191 4.191 21 C -0.185 4.185 22 C -0.077 4.077 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.070 -11.190 -9.303 15.767 hybrid contribution 0.183 1.295 1.297 1.842 sum 6.253 -9.895 -8.006 14.181 Atomic orbital electron populations 1.21813 0.94755 1.02491 1.01661 1.22307 0.96337 0.88772 1.01319 1.65457 1.05322 1.12768 1.40874 1.22936 0.97290 0.94532 0.92007 1.22332 0.95589 0.95930 0.88703 0.96109 1.60920 1.07921 1.47804 1.14760 1.18933 0.89884 0.87386 0.92897 1.01911 1.21557 0.99329 0.98342 0.97668 1.21588 1.02723 1.19479 1.13767 0.92318 1.25750 0.95002 0.97717 1.00200 1.70038 1.10788 1.32830 1.42116 0.85485 0.77875 0.78708 0.79122 1.20079 1.20905 1.19160 1.21474 0.93882 0.95687 0.96077 1.21753 0.97921 1.01579 0.97864 1.21778 1.01712 0.98207 0.96798 1.23181 0.88858 0.95034 1.00585 0.90384 0.94222 0.92232 0.88990 0.94924 0.92434 0.94116 0.83802 0.92836 0.95816 0.95660 0.92881 0.90338 0.93235 0.92449 0.92815 0.93943 0.90292 0.93492 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.63 71.98 0.69 -2.70 16 2 C 0.04 0.94 5.78 86.30 0.50 1.44 16 3 N -0.52 -14.70 5.49 -881.51 -4.84 -19.54 16 4 C 0.06 2.13 3.38 86.45 0.29 2.42 16 5 C 0.09 3.20 3.02 45.81 0.14 3.34 16 6 H 0.02 0.89 7.01 -2.39 -0.02 0.88 16 7 N -0.68 -29.30 5.48 -468.74 -2.57 -31.87 16 8 C 0.22 11.41 2.60 44.17 0.11 11.52 16 9 H -0.04 -2.16 7.43 -2.39 -0.02 -2.17 16 10 C -0.11 -5.69 9.00 71.98 0.65 -5.04 16 11 C -0.54 -29.99 8.59 25.60 0.22 -29.77 16 12 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 13 C 0.01 0.70 5.30 84.66 0.45 1.15 16 14 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 15 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.07 -2.01 1.03 -51.28 -0.05 -2.06 16 20 C -0.13 -3.56 7.08 71.98 0.51 -3.05 16 21 C -0.13 -3.26 8.24 71.98 0.59 -2.67 16 22 C 0.05 1.29 5.58 86.45 0.48 1.77 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.04 6.84 -2.39 -0.02 1.03 16 25 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 0.77 7.88 -2.38 -0.02 0.75 16 28 H 0.06 2.16 6.93 -2.39 -0.02 2.15 16 29 H 0.04 1.53 7.91 -2.39 -0.02 1.51 16 30 H 0.34 14.19 5.04 -89.69 -0.45 13.74 16 31 H 0.05 3.02 6.07 -2.39 -0.01 3.00 16 32 H 0.02 1.09 6.06 -2.39 -0.01 1.08 16 33 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.43 6.87 -2.38 -0.02 1.41 16 37 H 0.06 1.67 7.66 -2.38 -0.02 1.65 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.16 7.54 -2.39 -0.02 1.15 16 42 H 0.10 2.03 7.86 -2.38 -0.02 2.01 16 Total: -1.00 -60.76 314.54 -0.04 -60.80 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.52 Total: 22.03 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.59 Total: -23.65 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -7.16 Total: -105.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.76 -0.04 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.503 kcal (2) G-P(sol) polarization free energy of solvation -60.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds