Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46873 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99822 * 2 1 3 5 5 H 1.07999 * 120.00361 * 239.99802 * 4 2 1 6 6 C 1.37878 * 120.00089 * 60.00407 * 4 2 1 7 7 N 1.31517 * 120.00029 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00144 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46858 * 59.99874 * 8 6 4 10 10 H 1.48506 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47236 * 299.99596 * 8 6 4 12 12 N 1.46900 * 109.47287 * 119.99815 * 2 1 3 13 13 C 1.46905 * 110.99904 * 55.32034 * 12 2 1 14 14 C 1.46900 * 110.99868 * 291.36848 * 12 2 1 15 15 H 1.08997 * 109.47332 * 58.69735 * 14 12 2 16 16 C 1.53008 * 109.46757 * 178.69978 * 14 12 2 17 17 C 1.53005 * 109.46888 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.46823 * 299.99772 * 17 16 14 19 19 C 1.52999 * 109.47377 * 60.00033 * 18 17 16 20 20 H 1.08999 * 109.47067 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47280 * 60.00090 * 19 18 17 22 22 N 1.46901 * 109.47197 * 64.99458 * 21 19 18 23 23 C 1.52994 * 109.47053 * 298.69353 * 14 12 2 24 24 H 1.09004 * 109.47290 * 293.78669 * 1 2 3 25 25 H 1.08999 * 109.47539 * 53.79376 * 1 2 3 26 26 H 1.09002 * 109.47205 * 173.79514 * 1 2 3 27 27 H 0.96998 * 120.00515 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46875 * 296.04573 * 13 12 2 29 29 H 1.09000 * 109.47127 * 56.04755 * 13 12 2 30 30 H 1.08998 * 109.46900 * 176.04583 * 13 12 2 31 31 H 1.08997 * 109.47398 * 59.99797 * 16 14 12 32 32 H 1.08999 * 109.46892 * 299.99516 * 16 14 12 33 33 H 1.08998 * 109.46941 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.46910 * 59.99380 * 17 16 14 35 35 H 1.09005 * 109.47127 * 300.00265 * 18 17 16 36 36 H 1.09002 * 109.46826 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46753 * 304.99905 * 21 19 18 38 38 H 1.08996 * 109.47471 * 184.99711 * 21 19 18 39 39 H 1.00900 * 110.99725 * 56.04913 * 22 21 19 40 40 H 1.00901 * 111.00078 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.47507 * 60.00122 * 23 14 12 42 42 H 1.09005 * 109.47313 * 300.00628 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0196 -0.6924 1.1994 13 6 1.4594 -2.0474 1.2907 14 6 1.7240 0.0822 2.4121 15 1 0.6481 0.2381 2.4904 16 6 2.2190 -0.6844 3.6402 17 6 1.9117 0.1227 4.9032 18 6 2.6196 1.4769 4.8278 19 6 2.1247 2.2435 3.5997 20 1 2.6288 3.2085 3.5463 21 6 0.6146 2.4630 3.7098 22 7 0.3291 3.3376 4.8550 23 6 2.4315 1.4367 2.3371 24 1 -0.3634 0.4145 0.9404 25 1 -0.3634 0.6070 -0.8292 26 1 -0.3634 -1.0217 -0.1111 27 1 0.7081 1.1609 -3.4844 28 1 0.3778 -1.9860 1.4112 29 1 1.6928 -2.5992 0.3801 30 1 1.8920 -2.5624 2.1485 31 1 3.2950 -0.8403 3.5620 32 1 1.7150 -1.6494 3.6937 33 1 2.2639 -0.4236 5.7782 34 1 0.8358 0.2790 4.9816 35 1 3.6956 1.3206 4.7493 36 1 2.4011 2.0517 5.7278 37 1 0.1175 1.5034 3.8527 38 1 0.2476 2.9298 2.7958 39 1 0.8307 4.2097 4.7778 40 1 -0.6626 3.4983 4.9490 41 1 2.0790 1.9828 1.4621 42 1 3.5075 1.2807 2.2588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724017928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -10.682976 kcal Electronic energy + Delta-G solvation = -18819.495492 eV Core-core repulsion = 16219.644080 eV Total energy + Delta-G solvation = -2599.851412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38871 -36.43519 -33.75240 -32.43707 -30.47688 -29.47155 -27.91291 -25.21068 -25.02753 -23.94289 -22.12279 -21.19776 -19.11471 -18.00632 -16.41763 -15.85826 -15.17651 -15.06788 -14.68669 -14.00848 -13.98964 -13.58242 -12.95415 -12.93483 -12.80187 -12.33772 -11.95752 -11.68711 -11.45581 -11.27673 -11.05067 -10.86576 -10.75913 -10.67472 -10.60774 -10.41721 -10.21400 -10.01099 -9.86822 -9.56910 -9.24622 -8.79591 -8.61020 -8.32367 -7.02089 -5.97579 -3.99884 3.34440 3.38412 3.41726 4.44008 4.63603 4.87966 5.03070 5.12026 5.34587 5.39559 5.51751 5.57608 5.75029 5.78900 5.88328 5.99257 6.02059 6.04878 6.20734 6.24182 6.29113 6.41919 6.46003 6.58256 6.59770 6.69612 6.72466 6.82652 6.84308 6.91241 6.95337 7.17353 7.20453 7.44936 7.57564 7.74733 7.89913 8.22725 8.44754 8.69309 9.06235 9.64654 11.10001 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.006548 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.895309 B = 4275.205650 C = 4654.464925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.208 3.792 3 H 0.044 0.956 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.085 3.915 15 H 0.033 0.967 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.082 4.082 20 H 0.062 0.938 21 C 0.060 3.940 22 N -0.850 5.850 23 C -0.106 4.106 24 H 0.005 0.995 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.335 0.665 40 H 0.336 0.664 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 2.162 12.817 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.061 0.939 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.023 4.023 15 H 0.051 0.949 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.140 4.140 19 C -0.101 4.101 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.378 5.378 23 C -0.144 4.144 24 H 0.024 0.976 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.575 1.641 13.051 13.167 hybrid contribution -1.108 0.296 -1.666 2.023 sum -0.533 1.937 11.385 11.561 Atomic orbital electron populations 1.22361 1.01148 1.00146 0.99006 1.19332 0.89473 0.94850 0.86119 0.93876 1.21105 1.30388 1.12364 0.89768 0.92111 1.24921 0.95305 0.95159 0.98929 1.69890 1.37220 1.23155 1.23360 0.86607 0.79217 0.79611 0.82219 1.20434 1.21473 1.20273 1.62362 1.59061 1.02010 1.02207 1.22237 0.96130 0.91994 1.01110 1.21525 0.96823 0.93282 0.90708 0.94916 1.21686 1.01631 0.98120 0.93824 1.21525 1.00619 0.95940 0.97253 1.21410 0.98986 0.95827 0.97781 1.21115 0.94683 0.98582 0.95743 0.91916 1.21999 0.96799 0.97430 0.90815 1.58793 1.13261 1.20132 1.45609 1.21605 1.01241 0.95250 0.96350 0.97584 0.89954 0.95099 0.93084 0.96900 0.91086 0.93663 0.91668 0.92464 0.92781 0.92092 0.92757 0.91574 0.90429 0.95581 0.85297 0.85224 0.91311 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.05 37.15 0.30 -3.78 16 2 C 0.21 5.21 2.13 -68.87 -0.15 5.06 16 3 H 0.04 1.17 5.93 -51.93 -0.31 0.87 16 4 C -0.50 -13.68 7.90 -34.44 -0.27 -13.95 16 5 H 0.06 1.68 7.03 -52.49 -0.37 1.31 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.62 11.39 55.43 0.63 -24.98 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 N -0.53 -11.47 4.58 -228.29 -1.05 -12.51 16 13 C 0.03 0.68 8.24 60.07 0.49 1.17 16 14 C 0.09 1.54 1.48 -67.71 -0.10 1.44 16 15 H 0.03 0.63 4.80 -51.93 -0.25 0.38 16 16 C -0.11 -1.77 4.80 -26.72 -0.13 -1.90 16 17 C -0.12 -1.53 5.65 -26.73 -0.15 -1.68 16 18 C -0.10 -1.33 5.34 -26.73 -0.14 -1.47 16 19 C -0.08 -1.14 2.80 -90.65 -0.25 -1.40 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 C 0.06 0.81 5.47 -3.83 -0.02 0.79 16 22 N -0.85 -9.37 9.08 -10.37 -0.09 -9.47 16 23 C -0.11 -1.83 4.55 -26.76 -0.12 -1.95 16 24 H 0.01 0.12 6.37 -51.93 -0.33 -0.21 16 25 H 0.08 2.21 6.26 -51.93 -0.33 1.88 16 26 H 0.03 0.74 6.80 -51.93 -0.35 0.39 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.01 0.25 6.61 -51.93 -0.34 -0.09 16 29 H 0.07 1.52 6.66 -51.93 -0.35 1.18 16 30 H 0.04 0.79 6.22 -51.93 -0.32 0.46 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.83 6.32 -51.93 -0.33 0.50 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 37 H 0.08 1.13 4.83 -51.93 -0.25 0.88 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.34 3.28 8.99 -39.29 -0.35 2.93 16 40 H 0.34 3.22 9.08 -39.29 -0.36 2.87 16 41 H 0.07 1.34 6.25 -51.93 -0.32 1.02 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -28.07 301.01 -8.60 -36.67 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.96 Total: 5.44 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.64 Total: -16.17 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.51 Total: -46.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.07 -8.60 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724017928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.983 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds