Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46873 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99822 * 2 1 3 5 5 H 1.07999 * 120.00361 * 239.99802 * 4 2 1 6 6 C 1.37878 * 120.00089 * 60.00407 * 4 2 1 7 7 N 1.31517 * 120.00029 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00144 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46858 * 59.99874 * 8 6 4 10 10 H 1.48506 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47236 * 299.99596 * 8 6 4 12 12 N 1.46900 * 109.47287 * 119.99815 * 2 1 3 13 13 C 1.46905 * 110.99904 * 55.32034 * 12 2 1 14 14 C 1.46900 * 110.99868 * 291.36848 * 12 2 1 15 15 H 1.08997 * 109.47332 * 58.69735 * 14 12 2 16 16 C 1.53008 * 109.46757 * 178.69978 * 14 12 2 17 17 C 1.53005 * 109.46888 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.46823 * 299.99772 * 17 16 14 19 19 C 1.52999 * 109.47377 * 60.00033 * 18 17 16 20 20 H 1.08999 * 109.47067 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47280 * 60.00090 * 19 18 17 22 22 N 1.46901 * 109.47197 * 64.99458 * 21 19 18 23 23 C 1.52994 * 109.47053 * 298.69353 * 14 12 2 24 24 H 1.09004 * 109.47290 * 293.78669 * 1 2 3 25 25 H 1.08999 * 109.47539 * 53.79376 * 1 2 3 26 26 H 1.09002 * 109.47205 * 173.79514 * 1 2 3 27 27 H 0.96998 * 120.00515 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46875 * 296.04573 * 13 12 2 29 29 H 1.09000 * 109.47127 * 56.04755 * 13 12 2 30 30 H 1.08998 * 109.46900 * 176.04583 * 13 12 2 31 31 H 1.08997 * 109.47398 * 59.99797 * 16 14 12 32 32 H 1.08999 * 109.46892 * 299.99516 * 16 14 12 33 33 H 1.08998 * 109.46941 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.46910 * 59.99380 * 17 16 14 35 35 H 1.09005 * 109.47127 * 300.00265 * 18 17 16 36 36 H 1.09002 * 109.46826 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.46753 * 304.99905 * 21 19 18 38 38 H 1.08996 * 109.47471 * 184.99711 * 21 19 18 39 39 H 1.00900 * 110.99725 * 56.04913 * 22 21 19 40 40 H 1.00901 * 111.00078 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.47507 * 60.00122 * 23 14 12 42 42 H 1.09005 * 109.47313 * 300.00628 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0196 -0.6924 1.1994 13 6 1.4594 -2.0474 1.2907 14 6 1.7240 0.0822 2.4121 15 1 0.6481 0.2381 2.4904 16 6 2.2190 -0.6844 3.6402 17 6 1.9117 0.1227 4.9032 18 6 2.6196 1.4769 4.8278 19 6 2.1247 2.2435 3.5997 20 1 2.6288 3.2085 3.5463 21 6 0.6146 2.4630 3.7098 22 7 0.3291 3.3376 4.8550 23 6 2.4315 1.4367 2.3371 24 1 -0.3634 0.4145 0.9404 25 1 -0.3634 0.6070 -0.8292 26 1 -0.3634 -1.0217 -0.1111 27 1 0.7081 1.1609 -3.4844 28 1 0.3778 -1.9860 1.4112 29 1 1.6928 -2.5992 0.3801 30 1 1.8920 -2.5624 2.1485 31 1 3.2950 -0.8403 3.5620 32 1 1.7150 -1.6494 3.6937 33 1 2.2639 -0.4236 5.7782 34 1 0.8358 0.2790 4.9816 35 1 3.6956 1.3206 4.7493 36 1 2.4011 2.0517 5.7278 37 1 0.1175 1.5034 3.8527 38 1 0.2476 2.9298 2.7958 39 1 0.8307 4.2097 4.7778 40 1 -0.6626 3.4983 4.9490 41 1 2.0790 1.9828 1.4621 42 1 3.5075 1.2807 2.2588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724017928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -29.770685 kcal Electronic energy + Delta-G solvation = -18820.323197 eV Core-core repulsion = 16219.644080 eV Total energy + Delta-G solvation = -2600.679117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76091 -38.00049 -35.15771 -34.15758 -31.72260 -31.11300 -29.50064 -27.28938 -26.52902 -25.22385 -23.52766 -22.62405 -20.73447 -19.31426 -18.31075 -17.27995 -16.84389 -16.33079 -16.15713 -15.51293 -15.27741 -15.09924 -14.48003 -14.44848 -14.23011 -13.80933 -13.44038 -13.21166 -13.11395 -12.85713 -12.74738 -12.49737 -12.46370 -12.30848 -12.02946 -11.98702 -11.89925 -11.82212 -11.15924 -10.88738 -10.84718 -10.68557 -10.40458 -9.57377 -8.76240 -8.09824 -6.19444 1.41941 1.43434 1.50955 2.43240 3.19358 3.37563 3.65431 3.80346 3.95034 4.19303 4.28673 4.37650 4.45080 4.53766 4.62299 4.67122 4.70339 4.75651 4.81121 4.86098 4.89137 4.91940 5.00088 5.10790 5.18260 5.20385 5.29606 5.31152 5.45224 5.47629 5.50700 5.59186 5.64637 5.74370 5.82841 6.22455 6.25535 6.54966 6.63500 6.84419 6.95095 7.49483 8.96451 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.006548 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.895309 B = 4275.205650 C = 4654.464925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.215 3.785 3 H 0.015 0.985 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.544 5.544 13 C 0.038 3.962 14 C 0.087 3.913 15 H 0.024 0.976 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.076 4.076 20 H 0.071 0.929 21 C 0.067 3.933 22 N -0.843 5.843 23 C -0.101 4.101 24 H 0.021 0.979 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.011 0.989 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.006 0.994 39 H 0.345 0.655 40 H 0.347 0.653 41 H 0.035 0.965 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 1.667 14.458 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.267 5.267 13 C -0.110 4.110 14 C -0.022 4.022 15 H 0.042 0.958 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.134 4.134 19 C -0.095 4.095 20 H 0.090 0.910 21 C -0.064 4.064 22 N -0.373 5.373 23 C -0.140 4.140 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.054 0.946 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.958 1.146 14.716 14.791 hybrid contribution -1.227 0.478 -2.142 2.514 sum -0.269 1.624 12.574 12.681 Atomic orbital electron populations 1.22139 1.00887 0.99281 0.98685 1.19057 0.89463 0.93476 0.87217 0.96712 1.21394 1.30450 1.12345 0.91119 0.92760 1.25681 0.95483 0.95839 1.01774 1.70021 1.38048 1.24271 1.23917 0.85625 0.78704 0.78677 0.78686 1.19734 1.21057 1.19853 1.62289 1.59241 1.02812 1.02395 1.22218 0.96181 0.91156 1.01460 1.21615 0.96461 0.93666 0.90435 0.95839 1.21635 1.01318 0.98293 0.93315 1.21492 1.00653 0.95889 0.96684 1.21377 0.99127 0.95601 0.97289 1.21054 0.95212 0.98627 0.94617 0.91031 1.21813 0.96220 0.97411 0.90917 1.58739 1.14290 1.20432 1.43807 1.21527 1.00350 0.95136 0.96946 0.95975 0.92616 0.95470 0.93108 0.97040 0.92996 0.90621 0.91885 0.91937 0.90581 0.92235 0.92346 0.90282 0.91326 0.97542 0.84251 0.84074 0.94593 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.52 8.05 71.98 0.58 -6.94 16 2 C 0.22 11.05 2.13 44.17 0.09 11.14 16 3 H 0.02 0.85 5.93 -2.39 -0.01 0.84 16 4 C -0.51 -28.83 7.90 25.60 0.20 -28.63 16 5 H 0.05 3.05 7.03 -2.91 -0.02 3.03 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.84 11.39 21.45 0.24 -53.60 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.54 -23.53 4.58 -876.19 -4.01 -27.54 16 13 C 0.04 1.50 8.24 127.69 1.05 2.55 16 14 C 0.09 3.09 1.48 44.92 0.07 3.16 16 15 H 0.02 0.90 4.80 -2.39 -0.01 0.89 16 16 C -0.11 -3.10 4.80 30.60 0.15 -2.95 16 17 C -0.11 -2.57 5.65 30.59 0.17 -2.40 16 18 C -0.10 -2.24 5.34 30.59 0.16 -2.07 16 19 C -0.08 -2.02 2.80 -10.81 -0.03 -2.05 16 20 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.07 1.75 5.47 86.30 0.47 2.23 16 22 N -0.84 -16.82 9.08 -186.72 -1.70 -18.52 16 23 C -0.10 -3.52 4.55 30.57 0.14 -3.38 16 24 H 0.02 0.98 6.37 -2.38 -0.02 0.97 16 25 H 0.05 3.07 6.26 -2.39 -0.01 3.06 16 26 H 0.03 1.32 6.80 -2.39 -0.02 1.30 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.01 0.44 6.61 -2.39 -0.02 0.42 16 29 H 0.05 2.22 6.66 -2.39 -0.02 2.20 16 30 H 0.08 2.49 6.22 -2.39 -0.01 2.47 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.73 6.33 -2.39 -0.02 1.72 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.45 6.32 -2.39 -0.02 1.44 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 1.69 7.75 -2.39 -0.02 1.67 16 37 H 0.07 1.93 4.83 -2.38 -0.01 1.91 16 38 H 0.01 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.34 5.98 8.99 -89.69 -0.81 5.17 16 40 H 0.35 5.93 9.08 -89.69 -0.81 5.12 16 41 H 0.04 1.47 6.25 -2.39 -0.01 1.45 16 42 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -60.42 301.01 -0.53 -60.95 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.60 Total: 20.56 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 3.51 Total: -28.32 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -5.47 Total: -99.65 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.42 -0.53 -60.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724017928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -60.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds