Wall clock time and date at job start Mon Mar 30 2020 03:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47004 * 2 1 4 4 C 1.46900 * 110.99618 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47003 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.87789 * 57.39131 * 5 4 3 7 7 C 1.55143 * 110.98960 * 293.54785 * 5 4 3 8 8 C 1.54326 * 103.01578 * 206.21594 * 7 5 4 9 9 N 1.47439 * 107.23571 * 22.28349 * 8 7 5 10 10 C 1.46902 * 111.00298 * 123.25440 * 9 8 7 11 11 C 1.53001 * 109.46901 * 69.87092 * 10 9 8 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46999 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46942 * 119.99666 * 17 15 13 20 20 H 1.48504 * 109.46979 * 239.99580 * 17 15 13 21 21 C 1.47848 * 108.56643 * 0.99136 * 9 8 7 22 22 H 1.09005 * 109.46752 * 59.99886 * 1 2 3 23 23 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47223 * 300.00492 * 1 2 3 25 25 H 1.08995 * 109.46936 * 240.00013 * 2 1 3 26 26 H 1.08996 * 109.46508 * 120.00061 * 2 1 3 27 27 H 1.00898 * 111.00406 * 303.95448 * 3 2 1 28 28 H 1.08994 * 109.47145 * 60.00331 * 4 3 2 29 29 H 1.09004 * 109.47140 * 299.99916 * 4 3 2 30 30 H 1.08994 * 110.70682 * 87.83787 * 7 5 4 31 31 H 1.08993 * 110.85375 * 324.66324 * 7 5 4 32 32 H 1.08997 * 109.89169 * 262.87655 * 8 7 5 33 33 H 1.09003 * 109.88412 * 141.69031 * 8 7 5 34 34 H 1.09001 * 109.46712 * 309.87494 * 10 9 8 35 35 H 1.09002 * 109.47411 * 189.87606 * 10 9 8 36 36 H 1.09001 * 109.46652 * 60.00371 * 11 10 9 37 37 H 1.08992 * 109.47514 * 300.00460 * 11 10 9 38 38 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 39 39 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 40 40 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.37881 * 94.73603 * 21 9 8 42 42 H 1.09007 * 110.37076 * 217.07637 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9595 2.8797 0.0012 6 1 3.5567 3.4181 0.8592 7 6 3.5807 3.5871 -1.3266 8 6 4.6468 4.6966 -1.4457 9 7 5.8011 4.2831 -0.6269 10 6 7.0280 4.2338 -1.4333 11 6 7.4471 5.6558 -1.8115 12 6 8.7246 5.6043 -2.6520 13 6 9.1378 7.0051 -3.0240 14 1 8.5485 7.8476 -2.6936 15 6 10.2683 7.2109 -3.7861 16 7 10.9862 6.1848 -4.1879 17 14 10.7809 8.9471 -4.2466 18 1 9.8127 9.9172 -3.6748 19 1 12.1363 9.2228 -3.7061 20 1 10.8009 9.0815 -5.7254 21 6 5.5061 2.9631 -0.0300 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.6442 1.9013 -0.7813 28 1 3.8654 0.9201 -0.8891 29 1 3.8647 0.9203 0.8909 30 1 2.5816 4.0179 -1.2623 31 1 3.6479 2.8964 -2.1670 32 1 4.2452 5.6384 -1.0717 33 1 4.9512 4.8080 -2.4864 34 1 6.8443 3.6560 -2.3392 35 1 7.8233 3.7618 -0.8564 36 1 7.6308 6.2335 -0.9056 37 1 6.6519 6.1277 -2.3884 38 1 9.5201 5.1322 -2.0754 39 1 8.5405 5.0268 -3.5579 40 1 11.7813 6.3296 -4.7244 41 1 5.9166 2.1660 -0.6497 42 1 5.9097 2.9050 0.9810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719068076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:21 Heat of formation + Delta-G solvation = -22.432949 kcal Electronic energy + Delta-G solvation = -17022.574386 eV Core-core repulsion = 14422.213456 eV Total energy + Delta-G solvation = -2600.360929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.24154 -36.73380 -34.32597 -32.72672 -31.16675 -29.60829 -28.79665 -26.24832 -24.10485 -23.00453 -22.34419 -20.77927 -20.41223 -19.36516 -16.71856 -16.28493 -15.83638 -15.29120 -15.10450 -14.42523 -14.27226 -13.79281 -13.65718 -13.35840 -13.04235 -12.69827 -12.24309 -12.19813 -11.96694 -11.88509 -11.48431 -11.38138 -11.05604 -10.90960 -10.84341 -10.73371 -10.59466 -10.47605 -10.39388 -9.61341 -9.28515 -9.00551 -8.73700 -8.31602 -8.00776 -5.96770 -3.98486 3.33286 3.40496 3.45434 3.81942 4.23415 4.49515 4.55080 4.74411 4.83168 4.87588 4.91926 5.13670 5.26349 5.31214 5.39063 5.40849 5.46870 5.53145 5.65105 5.70074 5.74511 5.78512 5.83419 5.84829 5.94510 6.09348 6.20204 6.31329 6.37048 6.71768 6.75332 6.83631 7.07883 7.16277 7.32657 7.46850 7.72804 7.87629 8.04227 8.48039 9.09095 9.65377 11.14802 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.069205 B = 0.003197 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.498467 B = 8756.382629 C = 8855.627531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 N -0.690 5.690 4 C 0.069 3.931 5 C -0.094 4.094 6 H 0.091 0.909 7 C -0.139 4.139 8 C 0.043 3.957 9 N -0.530 5.530 10 C 0.052 3.948 11 C -0.103 4.103 12 C 0.021 3.979 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.047 3.953 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.341 0.659 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.043 0.957 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 -11.530 7.561 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.322 5.322 4 C -0.061 4.061 5 C -0.114 4.114 6 H 0.110 0.890 7 C -0.178 4.178 8 C -0.085 4.085 9 N -0.253 5.253 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.017 4.017 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.081 4.081 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.104 -11.144 8.535 22.909 hybrid contribution 0.539 0.012 -1.967 2.040 sum -17.565 -11.132 6.568 21.808 Atomic orbital electron populations 1.21772 0.94950 1.01677 1.02447 1.21924 0.95713 0.89627 1.00456 1.60492 1.08110 1.13424 1.50186 1.21905 0.87386 0.96209 1.00555 1.22326 0.95328 0.94968 0.98750 0.89022 1.22863 0.99747 0.98168 0.96986 1.22812 0.90405 0.98108 0.97176 1.63634 1.03235 1.25440 1.33034 1.22466 0.90767 0.99724 0.94612 1.21622 0.99446 0.93055 0.99982 1.19087 0.91215 0.97036 0.94334 1.21302 1.09299 0.92862 1.31981 0.92610 1.25040 0.96576 0.96866 0.96137 1.69980 1.16788 1.29754 1.37190 0.86541 0.78464 0.84950 0.78092 1.19709 1.21019 1.21079 1.23028 0.94133 0.90821 1.00145 0.92858 0.92240 0.91762 0.95478 0.91050 0.84126 0.95241 0.90822 0.90848 0.92076 0.90713 0.92299 0.95352 0.91399 0.92625 0.93582 0.96640 0.96916 0.93131 0.93899 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.17 37.16 0.38 -0.59 16 2 C 0.05 0.40 6.40 -3.82 -0.02 0.37 16 3 N -0.69 -6.10 6.50 -113.78 -0.74 -6.84 16 4 C 0.07 0.65 5.19 -3.82 -0.02 0.63 16 5 C -0.09 -1.01 3.29 -88.48 -0.29 -1.30 16 6 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.14 -1.52 5.62 -24.90 -0.14 -1.66 16 8 C 0.04 0.60 6.21 -2.83 -0.02 0.58 16 9 N -0.53 -8.30 5.16 -231.24 -1.19 -9.49 16 10 C 0.05 0.94 4.54 -3.82 -0.02 0.92 16 11 C -0.10 -2.23 5.18 -26.73 -0.14 -2.36 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.05 0.60 6.15 -2.30 -0.01 0.59 16 22 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.34 2.84 7.94 -39.29 -0.31 2.53 16 28 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 34 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 35 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.04 0.55 7.71 -51.93 -0.40 0.15 16 42 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -30.42 331.83 -10.20 -40.62 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -8.15 Total: -3.36 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.83 Total: -16.23 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -1.20 Total: -43.06 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.42 -10.20 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719068076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.188 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds