Wall clock time and date at job start Mon Mar 30 2020 03:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47004 * 2 1 4 4 C 1.46900 * 110.99618 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47003 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.87789 * 57.39131 * 5 4 3 7 7 C 1.55143 * 110.98960 * 293.54785 * 5 4 3 8 8 C 1.54326 * 103.01578 * 206.21594 * 7 5 4 9 9 N 1.47439 * 107.23571 * 22.28349 * 8 7 5 10 10 C 1.46902 * 111.00298 * 123.25440 * 9 8 7 11 11 C 1.53001 * 109.46901 * 69.87092 * 10 9 8 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46999 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46942 * 119.99666 * 17 15 13 20 20 H 1.48504 * 109.46979 * 239.99580 * 17 15 13 21 21 C 1.47848 * 108.56643 * 0.99136 * 9 8 7 22 22 H 1.09005 * 109.46752 * 59.99886 * 1 2 3 23 23 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47223 * 300.00492 * 1 2 3 25 25 H 1.08995 * 109.46936 * 240.00013 * 2 1 3 26 26 H 1.08996 * 109.46508 * 120.00061 * 2 1 3 27 27 H 1.00898 * 111.00406 * 303.95448 * 3 2 1 28 28 H 1.08994 * 109.47145 * 60.00331 * 4 3 2 29 29 H 1.09004 * 109.47140 * 299.99916 * 4 3 2 30 30 H 1.08994 * 110.70682 * 87.83787 * 7 5 4 31 31 H 1.08993 * 110.85375 * 324.66324 * 7 5 4 32 32 H 1.08997 * 109.89169 * 262.87655 * 8 7 5 33 33 H 1.09003 * 109.88412 * 141.69031 * 8 7 5 34 34 H 1.09001 * 109.46712 * 309.87494 * 10 9 8 35 35 H 1.09002 * 109.47411 * 189.87606 * 10 9 8 36 36 H 1.09001 * 109.46652 * 60.00371 * 11 10 9 37 37 H 1.08992 * 109.47514 * 300.00460 * 11 10 9 38 38 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 39 39 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 40 40 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.37881 * 94.73603 * 21 9 8 42 42 H 1.09007 * 110.37076 * 217.07637 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9595 2.8797 0.0012 6 1 3.5567 3.4181 0.8592 7 6 3.5807 3.5871 -1.3266 8 6 4.6468 4.6966 -1.4457 9 7 5.8011 4.2831 -0.6269 10 6 7.0280 4.2338 -1.4333 11 6 7.4471 5.6558 -1.8115 12 6 8.7246 5.6043 -2.6520 13 6 9.1378 7.0051 -3.0240 14 1 8.5485 7.8476 -2.6936 15 6 10.2683 7.2109 -3.7861 16 7 10.9862 6.1848 -4.1879 17 14 10.7809 8.9471 -4.2466 18 1 9.8127 9.9172 -3.6748 19 1 12.1363 9.2228 -3.7061 20 1 10.8009 9.0815 -5.7254 21 6 5.5061 2.9631 -0.0300 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.6442 1.9013 -0.7813 28 1 3.8654 0.9201 -0.8891 29 1 3.8647 0.9203 0.8909 30 1 2.5816 4.0179 -1.2623 31 1 3.6479 2.8964 -2.1670 32 1 4.2452 5.6384 -1.0717 33 1 4.9512 4.8080 -2.4864 34 1 6.8443 3.6560 -2.3392 35 1 7.8233 3.7618 -0.8564 36 1 7.6308 6.2335 -0.9056 37 1 6.6519 6.1277 -2.3884 38 1 9.5201 5.1322 -2.0754 39 1 8.5405 5.0268 -3.5579 40 1 11.7813 6.3296 -4.7244 41 1 5.9166 2.1660 -0.6497 42 1 5.9097 2.9050 0.9810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719068076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:21 Heat of formation + Delta-G solvation = -42.579715 kcal Electronic energy + Delta-G solvation = -17023.448015 eV Core-core repulsion = 14422.213456 eV Total energy + Delta-G solvation = -2601.234559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31348 -37.57979 -36.04119 -34.36649 -32.53224 -30.79053 -29.75332 -27.97791 -25.26910 -24.45460 -23.04442 -22.36430 -21.48767 -20.67618 -18.48833 -17.59189 -16.83721 -16.56252 -16.27546 -15.93433 -15.43221 -14.88381 -14.72809 -14.57258 -14.19002 -14.03072 -13.60791 -13.51336 -13.29766 -12.87470 -12.70710 -12.58888 -12.50755 -12.29023 -12.15505 -12.02115 -11.79684 -11.70963 -11.52793 -11.44736 -11.34779 -11.06385 -10.57051 -9.41230 -9.24823 -8.21463 -6.32568 1.39163 1.39666 1.53509 2.40167 2.96968 3.11459 3.20709 3.65876 3.84202 3.93051 4.16822 4.23421 4.28016 4.34317 4.38052 4.46551 4.54012 4.63488 4.66015 4.71582 4.71835 4.86128 4.89473 4.97686 4.98541 5.05885 5.08805 5.12139 5.16021 5.24902 5.32704 5.40513 5.51067 5.72406 5.84278 6.03474 6.10176 6.12512 6.27274 6.44240 6.84151 7.36688 8.90791 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.069205 B = 0.003197 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.498467 B = 8756.382629 C = 8855.627531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.696 5.696 4 C 0.076 3.924 5 C -0.082 4.082 6 H 0.090 0.910 7 C -0.129 4.129 8 C 0.037 3.963 9 N -0.540 5.540 10 C 0.065 3.935 11 C -0.087 4.087 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.044 3.956 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.344 0.656 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.047 0.953 38 H -0.008 1.008 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.043 0.957 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.630 -11.250 7.914 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.328 5.328 4 C -0.054 4.054 5 C -0.101 4.101 6 H 0.108 0.892 7 C -0.167 4.167 8 C -0.090 4.090 9 N -0.264 5.264 10 C -0.063 4.063 11 C -0.125 4.125 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.084 4.084 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.162 0.838 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.451 -10.873 8.899 23.995 hybrid contribution 0.946 -0.109 -2.064 2.273 sum -18.505 -10.982 6.835 22.578 Atomic orbital electron populations 1.21743 0.94035 1.02389 1.02288 1.21972 0.96467 0.88926 1.00486 1.60498 1.07562 1.14261 1.50441 1.21794 0.87916 0.95018 1.00636 1.22205 0.93539 0.95903 0.98468 0.89196 1.22800 0.99578 0.97144 0.97191 1.22870 0.90740 0.99417 0.95996 1.63566 1.02786 1.27395 1.32693 1.22169 0.92212 0.97085 0.94876 1.21363 0.97028 0.95424 0.98700 1.18980 0.92835 0.95640 0.93749 1.21711 1.09898 0.93881 1.32501 0.92363 1.26013 0.96471 1.01657 0.95843 1.70104 1.17312 1.32320 1.37725 0.85370 0.78265 0.79222 0.78021 1.18650 1.20218 1.20204 1.23104 0.95895 0.89297 1.00058 0.92632 0.91144 0.92254 0.95394 0.91064 0.83765 0.95456 0.90508 0.88979 0.91760 0.90584 0.93803 0.95722 0.91640 0.93134 0.93455 0.98994 0.99195 0.92725 0.93837 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.17 71.98 0.73 -0.88 16 2 C 0.05 0.68 6.40 86.30 0.55 1.23 16 3 N -0.70 -10.85 6.50 -513.89 -3.34 -14.19 16 4 C 0.08 1.28 5.19 86.30 0.45 1.73 16 5 C -0.08 -1.60 3.29 -9.41 -0.03 -1.63 16 6 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 7 C -0.13 -2.58 5.62 31.78 0.18 -2.40 16 8 C 0.04 1.02 6.21 86.65 0.54 1.55 16 9 N -0.54 -16.57 5.16 -885.51 -4.57 -21.14 16 10 C 0.06 2.37 4.54 86.30 0.39 2.76 16 11 C -0.09 -3.83 5.18 30.59 0.16 -3.67 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 17 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C 0.04 1.08 6.15 86.77 0.53 1.62 16 22 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.34 4.95 7.94 -89.70 -0.71 4.23 16 28 H 0.03 0.48 8.11 -2.39 -0.02 0.46 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 31 H 0.06 1.27 8.02 -2.39 -0.02 1.25 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.32 6.91 -2.39 -0.02 1.30 16 34 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 35 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.04 1.07 7.71 -2.39 -0.02 1.05 16 42 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -64.83 331.83 -1.02 -65.85 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.23 Total: 9.49 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.35 Total: -29.53 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -7.62 Total: -93.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.83 -1.02 -65.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719068076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.272 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds