Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47438 * 2 1 4 4 C 1.46904 * 111.00220 * 199.78087 * 3 2 1 5 5 C 1.50703 * 109.47022 * 66.04819 * 4 3 2 6 6 H 1.08002 * 119.99656 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99825 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99796 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47711 * 89.99839 * 9 7 5 11 11 H 1.48508 * 109.46980 * 209.99922 * 9 7 5 12 12 H 1.48500 * 109.46999 * 329.99680 * 9 7 5 13 13 C 1.46900 * 111.00276 * 75.82535 * 3 2 1 14 14 H 1.09005 * 109.46911 * 313.41699 * 13 3 2 15 15 C 1.52994 * 109.47473 * 193.41814 * 13 3 2 16 16 C 1.53002 * 109.47235 * 180.02562 * 15 13 3 17 17 C 1.52998 * 109.47031 * 59.99737 * 16 15 13 18 18 C 1.52997 * 109.47111 * 299.99899 * 17 16 15 19 19 H 1.08995 * 109.47357 * 300.00158 * 18 17 16 20 20 C 1.53006 * 109.47196 * 180.02562 * 18 17 16 21 21 N 1.46896 * 109.46957 * 64.99982 * 20 18 17 22 22 C 1.52998 * 109.46857 * 73.41512 * 13 3 2 23 23 H 1.09000 * 109.47085 * 184.57336 * 1 2 3 24 24 H 1.08997 * 109.47473 * 304.57963 * 1 2 3 25 25 H 1.08999 * 109.46914 * 64.57640 * 1 2 3 26 26 H 1.09001 * 109.47577 * 239.99998 * 2 1 3 27 27 H 1.09003 * 109.47388 * 119.99916 * 2 1 3 28 28 H 1.08996 * 109.46779 * 186.04247 * 4 3 2 29 29 H 1.08998 * 109.46930 * 306.04628 * 4 3 2 30 30 H 0.97006 * 119.99696 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46958 * 299.99856 * 15 13 3 32 32 H 1.08994 * 109.47467 * 59.99540 * 15 13 3 33 33 H 1.09001 * 109.46930 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47004 * 299.99844 * 16 15 13 35 35 H 1.09008 * 109.46956 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.47207 * 60.00184 * 17 16 15 37 37 H 1.09007 * 109.46818 * 305.00074 * 20 18 17 38 38 H 1.08998 * 109.47280 * 185.00352 * 20 18 17 39 39 H 1.00896 * 110.99922 * 56.04946 * 21 20 18 40 40 H 1.00901 * 111.00112 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.47660 * 60.00375 * 22 13 3 42 42 H 1.09001 * 109.47379 * 300.00051 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4119 1.4511 -0.4641 5 6 3.4776 1.0477 -1.9147 6 1 2.5753 0.7695 -2.4391 7 6 4.6894 1.0337 -2.5721 8 7 4.7467 0.6811 -3.8379 9 14 6.2499 1.5141 -1.6647 10 1 6.8538 0.3072 -1.0451 11 1 7.2140 2.1143 -2.6216 12 1 5.9225 2.5028 -0.6062 13 6 1.8786 1.9933 1.3297 14 1 0.8831 1.7840 1.7212 15 6 2.0764 3.5066 1.2218 16 6 1.9301 4.1400 2.6068 17 6 2.9830 3.5539 3.5495 18 6 2.7851 2.0406 3.6574 19 1 1.7898 1.8314 4.0493 20 6 3.8377 1.4545 4.6006 21 7 3.6213 1.9725 5.9581 22 6 2.9311 1.4072 2.2728 23 1 -0.3633 -1.0244 0.0819 24 1 -0.3634 0.5832 0.8461 25 1 -0.3633 0.4412 -0.9281 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7838 2.4696 -0.3532 29 1 4.0254 0.7735 0.1296 30 1 5.5993 0.6716 -4.3005 31 1 3.0720 3.7158 0.8303 32 1 1.3267 3.9241 0.5498 33 1 2.0715 5.2181 2.5300 34 1 0.9348 3.9308 2.9987 35 1 2.8785 4.0049 4.5364 36 1 3.9784 3.7632 3.1576 37 1 4.8322 1.7395 4.2572 38 1 3.7536 0.3678 4.6086 39 1 2.6833 1.7772 6.2744 40 1 4.3047 1.6002 6.6004 41 1 3.9266 1.6165 1.8814 42 1 2.7902 0.3291 2.3497 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724017989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -19.504947 kcal Electronic energy + Delta-G solvation = -18562.181744 eV Core-core repulsion = 15961.947783 eV Total energy + Delta-G solvation = -2600.233962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.34123 -36.35348 -34.06163 -32.50532 -30.50763 -30.36344 -29.00644 -26.15804 -24.45128 -22.68971 -22.12694 -20.96561 -19.95828 -18.50218 -16.91575 -15.98512 -15.14135 -14.75159 -14.71283 -14.39625 -14.07898 -13.93082 -13.44072 -13.33111 -12.82804 -12.48323 -12.33304 -12.01190 -11.74971 -11.57069 -11.27742 -11.14109 -10.98556 -10.78594 -10.65612 -10.39946 -10.24475 -9.98239 -9.90727 -9.72626 -9.64955 -9.13723 -8.78912 -8.54330 -7.24375 -6.02751 -3.98824 3.28536 3.36712 3.38922 4.42948 4.43945 4.73224 4.79027 5.00508 5.23189 5.30024 5.32482 5.46543 5.59798 5.69039 5.71983 5.77254 5.83182 5.85736 5.94407 5.95131 6.03631 6.07669 6.19655 6.32027 6.41914 6.45615 6.51124 6.55016 6.67778 6.74839 6.78058 6.82181 6.97391 7.00560 7.08487 7.27721 7.68698 8.00989 8.16956 8.71556 9.06918 9.59910 11.10586 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.007846 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.613086 B = 3567.829748 C = 4157.000807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 N -0.521 5.521 4 C 0.160 3.840 5 C -0.507 4.507 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.087 3.913 14 H 0.069 0.931 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.078 4.078 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.849 5.849 22 C -0.148 4.148 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.019 0.981 28 H 0.031 0.969 29 H -0.016 1.016 30 H 0.263 0.737 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.337 0.663 40 H 0.337 0.663 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 2.162 16.826 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.243 5.243 4 C 0.034 3.966 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.022 4.022 14 H 0.087 0.913 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.098 4.098 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.378 5.378 22 C -0.188 4.188 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.002 0.998 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.087 0.913 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.626 3.115 15.982 16.927 hybrid contribution 1.367 -1.348 1.163 2.245 sum -3.258 1.768 17.146 17.542 Atomic orbital electron populations 1.21763 0.96543 0.99904 1.01723 1.22022 0.94398 0.90190 1.01007 1.62165 1.23605 1.17157 1.21388 1.20202 0.84214 0.96082 0.96081 1.21095 0.95289 1.44492 0.93646 0.90196 1.24890 0.98654 0.95058 0.94729 1.69900 1.25738 1.48861 1.09603 0.86908 0.83870 0.79227 0.80043 1.20467 1.21208 1.19104 1.21652 0.97201 0.94452 0.88911 0.91283 1.21565 1.02710 0.94623 0.95942 1.21551 0.98857 0.99363 0.95795 1.21469 0.98951 0.94366 0.99375 1.21087 0.97982 0.96037 0.94647 0.91852 1.21891 1.00026 0.95944 0.88864 1.58716 1.08142 1.67134 1.03808 1.22282 1.01777 0.99733 0.94985 0.93562 0.93728 0.92230 0.89338 0.96282 0.95141 0.99813 0.92760 0.91684 0.91481 0.92321 0.92543 0.91406 0.92494 0.91105 0.95811 0.85063 0.85077 0.91310 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.08 37.16 0.37 -1.90 16 2 C 0.05 1.00 5.43 -3.83 -0.02 0.98 16 3 N -0.52 -10.77 4.35 -228.08 -0.99 -11.76 16 4 C 0.16 3.86 2.62 -4.97 -0.01 3.84 16 5 C -0.51 -14.40 8.79 -34.44 -0.30 -14.70 16 6 H 0.08 2.48 7.56 -52.49 -0.40 2.08 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.09 1.48 2.08 -67.72 -0.14 1.34 16 14 H 0.07 1.10 6.52 -51.93 -0.34 0.76 16 15 C -0.11 -1.79 5.22 -26.73 -0.14 -1.93 16 16 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 17 C -0.10 -1.35 5.09 -26.73 -0.14 -1.49 16 18 C -0.08 -1.00 2.33 -90.64 -0.21 -1.21 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 20 C 0.06 0.74 6.18 -3.82 -0.02 0.72 16 21 N -0.85 -8.26 9.08 -10.37 -0.09 -8.35 16 22 C -0.15 -2.34 3.70 -26.76 -0.10 -2.44 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.66 6.66 -51.93 -0.35 0.31 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 27 H 0.02 0.35 6.39 -51.93 -0.33 0.01 16 28 H 0.03 0.75 5.32 -51.93 -0.28 0.48 16 29 H -0.02 -0.38 6.26 -51.93 -0.33 -0.71 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.06 1.18 6.49 -51.93 -0.34 0.84 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 7.75 -51.92 -0.40 0.43 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.34 2.86 8.99 -39.29 -0.35 2.51 16 40 H 0.34 2.72 9.08 -39.29 -0.36 2.36 16 41 H 0.07 1.24 6.54 -51.93 -0.34 0.90 16 42 H 0.06 0.92 6.62 -51.93 -0.34 0.57 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -29.86 310.84 -8.73 -38.58 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.46 Total: 3.43 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.97 Total: -16.62 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.31 Total: -47.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.86 -8.73 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724017989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.076 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds