Wall clock time and date at job start Mon Mar 30 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47438 * 2 1 4 4 C 1.46904 * 111.00220 * 199.78087 * 3 2 1 5 5 C 1.50703 * 109.47022 * 66.04819 * 4 3 2 6 6 H 1.08002 * 119.99656 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99825 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99796 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47711 * 89.99839 * 9 7 5 11 11 H 1.48508 * 109.46980 * 209.99922 * 9 7 5 12 12 H 1.48500 * 109.46999 * 329.99680 * 9 7 5 13 13 C 1.46900 * 111.00276 * 75.82535 * 3 2 1 14 14 H 1.09005 * 109.46911 * 313.41699 * 13 3 2 15 15 C 1.52994 * 109.47473 * 193.41814 * 13 3 2 16 16 C 1.53002 * 109.47235 * 180.02562 * 15 13 3 17 17 C 1.52998 * 109.47031 * 59.99737 * 16 15 13 18 18 C 1.52997 * 109.47111 * 299.99899 * 17 16 15 19 19 H 1.08995 * 109.47357 * 300.00158 * 18 17 16 20 20 C 1.53006 * 109.47196 * 180.02562 * 18 17 16 21 21 N 1.46896 * 109.46957 * 64.99982 * 20 18 17 22 22 C 1.52998 * 109.46857 * 73.41512 * 13 3 2 23 23 H 1.09000 * 109.47085 * 184.57336 * 1 2 3 24 24 H 1.08997 * 109.47473 * 304.57963 * 1 2 3 25 25 H 1.08999 * 109.46914 * 64.57640 * 1 2 3 26 26 H 1.09001 * 109.47577 * 239.99998 * 2 1 3 27 27 H 1.09003 * 109.47388 * 119.99916 * 2 1 3 28 28 H 1.08996 * 109.46779 * 186.04247 * 4 3 2 29 29 H 1.08998 * 109.46930 * 306.04628 * 4 3 2 30 30 H 0.97006 * 119.99696 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46958 * 299.99856 * 15 13 3 32 32 H 1.08994 * 109.47467 * 59.99540 * 15 13 3 33 33 H 1.09001 * 109.46930 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47004 * 299.99844 * 16 15 13 35 35 H 1.09008 * 109.46956 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.47207 * 60.00184 * 17 16 15 37 37 H 1.09007 * 109.46818 * 305.00074 * 20 18 17 38 38 H 1.08998 * 109.47280 * 185.00352 * 20 18 17 39 39 H 1.00896 * 110.99922 * 56.04946 * 21 20 18 40 40 H 1.00901 * 111.00112 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.47660 * 60.00375 * 22 13 3 42 42 H 1.09001 * 109.47379 * 300.00051 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4119 1.4511 -0.4641 5 6 3.4776 1.0477 -1.9147 6 1 2.5753 0.7695 -2.4391 7 6 4.6894 1.0337 -2.5721 8 7 4.7467 0.6811 -3.8379 9 14 6.2499 1.5141 -1.6647 10 1 6.8538 0.3072 -1.0451 11 1 7.2140 2.1143 -2.6216 12 1 5.9225 2.5028 -0.6062 13 6 1.8786 1.9933 1.3297 14 1 0.8831 1.7840 1.7212 15 6 2.0764 3.5066 1.2218 16 6 1.9301 4.1400 2.6068 17 6 2.9830 3.5539 3.5495 18 6 2.7851 2.0406 3.6574 19 1 1.7898 1.8314 4.0493 20 6 3.8377 1.4545 4.6006 21 7 3.6213 1.9725 5.9581 22 6 2.9311 1.4072 2.2728 23 1 -0.3633 -1.0244 0.0819 24 1 -0.3634 0.5832 0.8461 25 1 -0.3633 0.4412 -0.9281 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7838 2.4696 -0.3532 29 1 4.0254 0.7735 0.1296 30 1 5.5993 0.6716 -4.3005 31 1 3.0720 3.7158 0.8303 32 1 1.3267 3.9241 0.5498 33 1 2.0715 5.2181 2.5300 34 1 0.9348 3.9308 2.9987 35 1 2.8785 4.0049 4.5364 36 1 3.9784 3.7632 3.1576 37 1 4.8322 1.7395 4.2572 38 1 3.7536 0.3678 4.6086 39 1 2.6833 1.7772 6.2744 40 1 4.3047 1.6002 6.6004 41 1 3.9266 1.6165 1.8814 42 1 2.7902 0.3291 2.3497 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724017989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:53 Heat of formation + Delta-G solvation = -40.779878 kcal Electronic energy + Delta-G solvation = -18563.104295 eV Core-core repulsion = 15961.947783 eV Total energy + Delta-G solvation = -2601.156512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65954 -37.68190 -35.17818 -34.60768 -31.97405 -31.44544 -30.64617 -27.86182 -25.47487 -24.05925 -23.98163 -22.16455 -21.10231 -20.01797 -18.99231 -17.06654 -16.77071 -16.13136 -15.80753 -15.64532 -15.49580 -15.36560 -14.91458 -14.65077 -14.48167 -14.30921 -13.57150 -13.29859 -13.02279 -12.85497 -12.78214 -12.63680 -12.59516 -12.28807 -12.08786 -11.81479 -11.73940 -11.57373 -11.41016 -11.17985 -11.12179 -10.88875 -10.76740 -9.56425 -8.87594 -8.29168 -6.30528 1.29629 1.32056 1.42768 2.31910 3.03728 3.23732 3.58660 3.71991 3.93832 4.10204 4.15572 4.28823 4.40622 4.43480 4.53662 4.55157 4.64439 4.64720 4.70674 4.76006 4.80045 4.89445 4.90240 4.96745 5.06073 5.12665 5.25235 5.27605 5.33296 5.38446 5.40622 5.46566 5.48880 5.59451 5.64428 6.05507 6.23047 6.48521 6.63861 6.73118 6.77864 7.32673 8.87723 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.007846 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.613086 B = 3567.829748 C = 4157.000807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.538 5.538 4 C 0.178 3.822 5 C -0.512 4.512 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.252 1.252 13 C 0.087 3.913 14 H 0.089 0.911 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.099 4.099 18 C -0.070 4.070 19 H 0.080 0.920 20 C 0.068 3.932 21 N -0.849 5.849 22 C -0.142 4.142 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.026 0.974 29 H -0.017 1.017 30 H 0.266 0.734 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.347 0.653 40 H 0.348 0.652 41 H 0.042 0.958 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 2.785 19.996 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.260 5.260 4 C 0.051 3.949 5 C -0.551 4.551 6 H 0.056 0.944 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.176 1.176 13 C -0.022 4.022 14 H 0.107 0.893 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.137 4.137 18 C -0.090 4.090 19 H 0.098 0.902 20 C -0.063 4.063 21 N -0.380 5.380 22 C -0.181 4.181 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.001 0.999 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.061 0.939 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.969 3.739 19.183 20.166 hybrid contribution 1.371 -1.571 0.136 2.090 sum -3.598 2.168 19.319 19.770 Atomic orbital electron populations 1.21673 0.93736 1.01710 1.01743 1.22000 0.96658 0.89278 0.99663 1.62099 1.21302 1.18277 1.24363 1.19855 0.86548 0.95270 0.93275 1.21341 0.93898 1.44029 0.95820 0.94447 1.25781 1.02440 0.95048 0.95506 1.70051 1.26882 1.50492 1.11488 0.85816 0.79200 0.79521 0.79067 1.19346 1.20580 1.17582 1.21775 0.98614 0.94634 0.87136 0.89308 1.21556 1.00886 0.94375 0.97948 1.21503 0.99891 0.99723 0.93578 1.21432 0.97997 0.94441 0.99823 1.21016 0.99272 0.95718 0.92964 0.90215 1.21737 0.98859 0.95983 0.89721 1.58649 1.09209 1.67058 1.03083 1.22180 0.99721 0.99744 0.96505 0.91212 0.91748 0.93750 0.93325 0.94902 0.95598 0.99902 0.92523 0.94272 0.92207 0.91239 0.90700 0.90027 0.94118 0.92434 0.95637 0.83956 0.83867 0.93882 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 10.08 71.98 0.73 -3.29 16 2 C 0.05 2.00 5.43 86.30 0.47 2.47 16 3 N -0.54 -22.30 4.35 -875.53 -3.81 -26.11 16 4 C 0.18 8.68 2.62 85.56 0.22 8.91 16 5 C -0.51 -30.29 8.79 25.60 0.22 -30.06 16 6 H 0.04 2.46 7.56 -2.91 -0.02 2.44 16 7 C 0.01 0.56 5.47 84.65 0.46 1.02 16 8 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 9 Si 0.94 45.29 27.47 68.60 1.88 47.17 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.25 -11.46 6.54 99.48 0.65 -10.80 16 13 C 0.09 2.81 2.08 44.91 0.09 2.90 16 14 H 0.09 2.55 6.52 -2.38 -0.02 2.54 16 15 C -0.11 -3.42 5.22 30.59 0.16 -3.26 16 16 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 17 C -0.10 -2.30 5.09 30.59 0.16 -2.14 16 18 C -0.07 -1.60 2.33 -10.81 -0.03 -1.63 16 19 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 20 C 0.07 1.42 6.18 86.31 0.53 1.95 16 21 N -0.85 -13.77 9.08 -186.71 -1.69 -15.46 16 22 C -0.14 -4.25 3.70 30.58 0.11 -4.14 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.72 6.66 -2.39 -0.02 1.70 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 2.24 6.58 -2.39 -0.02 2.22 16 27 H 0.03 1.16 6.39 -2.39 -0.02 1.15 16 28 H 0.03 1.30 5.32 -2.39 -0.01 1.28 16 29 H -0.02 -0.81 6.26 -2.39 -0.01 -0.83 16 30 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 31 H 0.04 1.41 6.49 -2.38 -0.02 1.39 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.71 7.75 -2.38 -0.02 1.69 16 36 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.35 4.59 8.99 -89.70 -0.81 3.78 16 40 H 0.35 4.57 9.08 -89.69 -0.81 3.75 16 41 H 0.04 1.51 6.54 -2.39 -0.02 1.49 16 42 H 0.05 1.66 6.62 -2.39 -0.02 1.65 16 Total: -1.00 -66.51 310.84 -0.68 -67.19 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.68 Total: 16.87 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.32 Total: -29.63 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -5.20 Total: -101.60 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -66.51 -0.68 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724017989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.410 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds