Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.34779 * 119.99965 * 85.00573 * 12 2 1 14 14 O 1.21640 * 119.99996 * 359.97438 * 13 12 2 15 15 C 1.47164 * 119.99850 * 179.97438 * 13 12 2 16 16 C 1.35051 * 122.47912 * 179.73200 * 15 13 12 17 17 S 1.76179 * 108.26052 * 179.87544 * 16 15 13 18 18 C 1.76044 * 90.17513 * 0.32125 * 17 16 15 19 19 N 1.38467 * 125.18808 * 179.77357 * 18 17 16 20 20 N 1.29440 * 109.62841 * 359.81161 * 18 17 16 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 25 25 H 0.97003 * 119.99991 * 264.99646 * 12 2 1 26 26 H 1.08004 * 125.86612 * 0.02562 * 16 15 13 27 27 H 0.96997 * 120.00197 * 180.02562 * 19 18 17 28 28 H 0.97003 * 120.00095 * 0.04552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8575 1.1619 -2.4118 15 6 2.6382 -0.7119 -3.5585 16 6 2.7815 -0.0888 -4.7481 17 16 3.3922 -1.2594 -5.9145 18 6 3.3896 -2.5067 -4.6722 19 7 3.7765 -3.8226 -4.8618 20 7 2.9700 -2.0064 -3.5545 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9033 -0.5279 4.4376 25 1 2.2491 -1.6318 -1.1525 26 1 2.5618 0.9494 -4.9491 27 1 3.7447 -4.4490 -4.1219 28 1 4.0798 -4.1180 -5.7346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055189200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = 13.786095 kcal Electronic energy + Delta-G solvation = -14742.346702 eV Core-core repulsion = 12113.384025 eV Total energy + Delta-G solvation = -2628.962677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93326 -38.18422 -35.06822 -34.58950 -32.30824 -29.97420 -29.17263 -25.29303 -24.86505 -22.22055 -20.36885 -19.73207 -18.85703 -16.86544 -16.46389 -16.24300 -15.85161 -15.22293 -14.96087 -14.35246 -13.74258 -13.33126 -12.94349 -12.85378 -12.16362 -12.02655 -11.68248 -11.29251 -10.93355 -10.77680 -10.14262 -9.83280 -9.69087 -9.35572 -9.29185 -9.17879 -8.71028 -8.17552 -7.93378 -6.15940 -4.18057 0.79374 0.94729 1.56536 2.39402 3.18651 3.27372 3.38979 3.44095 3.89743 4.09524 4.36216 4.77727 5.18660 5.41604 5.58375 5.95020 6.36653 6.43144 6.60441 6.68493 6.88847 6.98619 7.25788 7.32448 7.55698 7.79373 8.23081 8.60046 8.80915 8.95793 9.44697 10.96325 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.044039 B = 0.005824 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.641958 B = 4806.863211 C = 5260.316655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.234 3.766 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.678 5.678 13 C 0.576 3.424 14 O -0.551 6.551 15 C 0.069 3.931 16 C -0.212 4.212 17 S 0.052 5.948 18 C 0.347 3.653 19 N -0.817 5.817 20 N -0.523 5.523 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.267 0.733 25 H 0.405 0.595 26 H 0.188 0.812 27 H 0.415 0.585 28 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -4.705 -18.716 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.324 5.324 13 C 0.358 3.642 14 O -0.430 6.430 15 C -0.062 4.062 16 C -0.355 4.355 17 S 0.298 5.702 18 C -0.029 4.029 19 N -0.370 5.370 20 N -0.250 5.250 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.240 0.760 26 H 0.205 0.795 27 H 0.248 0.752 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.335 -4.137 -19.065 19.648 hybrid contribution -0.628 0.251 0.869 1.101 sum 1.707 -3.887 -18.196 18.685 Atomic orbital electron populations 1.22450 0.99127 1.00981 0.99355 1.19186 0.90287 0.94752 0.82709 0.93178 1.21044 1.33164 1.14429 0.88449 0.90100 1.24828 0.95526 0.96727 0.95476 1.69875 1.44978 1.40167 0.98002 0.86872 0.80520 0.83643 0.77441 1.20298 1.22175 1.18574 1.46074 1.62995 1.14409 1.08957 1.17185 0.78738 0.85983 0.82296 1.90768 1.52366 1.15047 1.84836 1.20237 1.02467 0.88082 0.95463 1.26614 1.10359 1.04509 0.93993 1.84825 1.67288 1.03021 1.15102 1.24143 0.96603 0.91227 0.90949 1.41459 1.73897 1.05442 1.16191 1.66646 1.22406 1.11914 1.23993 0.94446 0.92726 0.93368 0.92329 0.76004 0.79532 0.75247 0.75548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.96 37.16 0.33 -3.41 15 2 C 0.23 5.87 2.15 -69.08 -0.15 5.72 15 3 H 0.05 1.36 6.63 -51.93 -0.34 1.01 15 4 C -0.53 -14.94 9.31 -34.44 -0.32 -15.26 15 5 H 0.08 2.40 7.98 -52.49 -0.42 1.98 15 6 C 0.08 2.23 5.45 -17.82 -0.10 2.14 15 7 N -0.89 -26.94 13.96 55.43 0.77 -26.16 15 8 Si 0.89 22.15 24.37 -169.99 -4.14 18.01 15 9 H -0.28 -6.67 6.87 56.52 0.39 -6.28 15 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 11 H -0.26 -6.47 6.53 56.52 0.37 -6.11 15 12 N -0.68 -14.98 5.07 -56.09 -0.28 -15.26 15 13 C 0.58 12.19 7.75 -12.64 -0.10 12.09 15 14 O -0.55 -12.97 16.33 5.24 0.09 -12.89 15 15 C 0.07 1.19 6.67 -84.59 -0.56 0.62 15 16 C -0.21 -3.05 10.83 29.60 0.32 -2.73 15 17 S 0.05 0.55 23.41 -107.50 -2.52 -1.97 15 18 C 0.35 4.15 8.82 -88.02 -0.78 3.37 15 19 N -0.82 -6.19 9.07 30.70 0.28 -5.91 15 20 N -0.52 -8.23 10.02 -10.59 -0.11 -8.34 15 21 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.05 1.14 3.27 -51.93 -0.17 0.97 15 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 25 H 0.40 8.46 8.02 -40.82 -0.33 8.14 15 26 H 0.19 2.50 8.01 -52.48 -0.42 2.08 15 27 H 0.41 2.86 8.95 -40.82 -0.37 2.50 15 28 H 0.41 1.79 8.95 -40.82 -0.37 1.43 15 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -33.10 259.09 -5.80 -38.90 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.44 Total: 7.18 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.35 Total: 2.55 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.66 Total: -55.68 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.52 Total: -1.97 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.10 -5.80 -38.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055189200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.682 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds