Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.34779 * 119.99965 * 85.00573 * 12 2 1 14 14 O 1.21640 * 119.99996 * 359.97438 * 13 12 2 15 15 C 1.47164 * 119.99850 * 179.97438 * 13 12 2 16 16 C 1.35051 * 122.47912 * 179.73200 * 15 13 12 17 17 S 1.76179 * 108.26052 * 179.87544 * 16 15 13 18 18 C 1.76044 * 90.17513 * 0.32125 * 17 16 15 19 19 N 1.38467 * 125.18808 * 179.77357 * 18 17 16 20 20 N 1.29440 * 109.62841 * 359.81161 * 18 17 16 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 25 25 H 0.97003 * 119.99991 * 264.99646 * 12 2 1 26 26 H 1.08004 * 125.86612 * 0.02562 * 16 15 13 27 27 H 0.96997 * 120.00197 * 180.02562 * 19 18 17 28 28 H 0.97003 * 120.00095 * 0.04552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8575 1.1619 -2.4118 15 6 2.6382 -0.7119 -3.5585 16 6 2.7815 -0.0888 -4.7481 17 16 3.3922 -1.2594 -5.9145 18 6 3.3896 -2.5067 -4.6722 19 7 3.7765 -3.8226 -4.8618 20 7 2.9700 -2.0064 -3.5545 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9033 -0.5279 4.4376 25 1 2.2491 -1.6318 -1.1525 26 1 2.5618 0.9494 -4.9491 27 1 3.7447 -4.4490 -4.1219 28 1 4.0798 -4.1180 -5.7346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055189200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -13.371045 kcal Electronic energy + Delta-G solvation = -14743.524324 eV Core-core repulsion = 12113.384025 eV Total energy + Delta-G solvation = -2630.140299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27994 -39.58910 -36.90686 -35.51587 -34.39747 -31.83090 -30.29633 -27.26568 -26.27962 -23.57697 -22.04207 -21.01843 -20.26499 -18.64101 -17.69431 -17.43792 -17.15256 -16.74506 -16.33112 -16.08353 -15.26557 -14.99159 -14.77623 -14.14990 -14.12180 -13.71249 -13.25137 -12.93763 -12.78678 -12.15051 -11.93339 -11.64257 -11.30936 -11.11184 -10.87248 -10.71515 -10.29879 -9.93730 -8.91376 -8.38131 -6.44955 -0.29920 0.03066 0.50973 1.16367 1.28776 1.36459 1.46965 2.26945 2.28526 2.43658 2.59190 2.97539 3.62315 4.26300 4.35864 4.43588 4.56068 4.67154 4.80442 4.97218 5.29943 5.39974 5.58187 5.98809 6.08124 6.24423 6.55166 6.77326 7.01987 7.16130 7.32806 8.77403 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.044039 B = 0.005824 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.641958 B = 4806.863211 C = 5260.316655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.239 3.761 3 H 0.029 0.971 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.290 1.290 11 H -0.260 1.260 12 N -0.682 5.682 13 C 0.575 3.425 14 O -0.582 6.582 15 C 0.041 3.959 16 C -0.219 4.219 17 S 0.145 5.855 18 C 0.338 3.662 19 N -0.794 5.794 20 N -0.561 5.561 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.271 0.729 25 H 0.409 0.591 26 H 0.192 0.808 27 H 0.420 0.580 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -4.934 -21.057 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 H 0.046 0.954 4 C -0.574 4.574 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.769 3.231 9 H -0.183 1.183 10 H -0.217 1.217 11 H -0.184 1.184 12 N -0.329 5.329 13 C 0.359 3.641 14 O -0.464 6.464 15 C -0.091 4.091 16 C -0.363 4.363 17 S 0.392 5.608 18 C -0.038 4.038 19 N -0.349 5.349 20 N -0.289 5.289 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.245 0.755 26 H 0.209 0.791 27 H 0.253 0.747 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.095 -4.431 -21.468 22.020 hybrid contribution -0.416 0.205 1.430 1.503 sum 1.679 -4.226 -20.038 20.547 Atomic orbital electron populations 1.22337 0.97415 1.01713 0.99757 1.18893 0.91553 0.93317 0.82790 0.95363 1.21212 1.32603 1.13609 0.90022 0.93038 1.25592 0.96828 0.99571 0.95090 1.69984 1.46567 1.41998 0.98673 0.85952 0.79719 0.80049 0.77406 1.18259 1.21676 1.18440 1.45934 1.63675 1.14536 1.08759 1.17698 0.77678 0.85727 0.82965 1.90726 1.53704 1.16400 1.85561 1.19665 1.05512 0.89278 0.94604 1.26904 1.08972 1.05801 0.94637 1.84493 1.65156 0.99634 1.11472 1.24438 0.95616 0.92801 0.90993 1.41534 1.72116 1.03866 1.17424 1.66544 1.24655 1.11445 1.26263 0.93306 0.91850 0.93562 0.91938 0.75525 0.79120 0.74659 0.73429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.06 8.96 71.98 0.65 -6.41 15 2 C 0.24 12.13 2.15 44.25 0.10 12.23 15 3 H 0.03 1.57 6.63 -2.39 -0.02 1.55 15 4 C -0.54 -30.82 9.31 25.60 0.24 -30.59 15 5 H 0.05 3.18 7.98 -2.91 -0.02 3.16 15 6 C 0.03 1.68 5.45 84.65 0.46 2.14 15 7 N -0.93 -57.26 13.96 21.45 0.30 -56.96 15 8 Si 0.94 45.57 24.37 68.60 1.67 47.24 15 9 H -0.26 -11.60 6.87 99.48 0.68 -10.92 15 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 15 11 H -0.26 -12.45 6.53 99.48 0.65 -11.80 15 12 N -0.68 -30.78 5.07 -449.61 -2.28 -33.06 15 13 C 0.57 24.64 7.75 86.59 0.67 25.32 15 14 O -0.58 -27.79 16.33 -4.16 -0.07 -27.85 15 15 C 0.04 1.39 6.67 40.48 0.27 1.66 15 16 C -0.22 -5.95 10.83 67.09 0.73 -5.23 15 17 S 0.15 2.59 23.41 -56.49 -1.32 1.27 15 18 C 0.34 7.26 8.82 179.44 1.58 8.84 15 19 N -0.79 -9.72 9.07 -56.78 -0.52 -10.23 15 20 N -0.56 -17.13 10.02 -187.42 -1.88 -19.01 15 21 H 0.05 2.09 8.14 -2.39 -0.02 2.08 15 22 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.05 2.11 3.27 -2.39 -0.01 2.11 15 24 H 0.27 15.51 8.31 -92.70 -0.77 14.74 15 25 H 0.41 17.61 8.02 -92.71 -0.74 16.87 15 26 H 0.19 4.86 8.01 -2.91 -0.02 4.84 15 27 H 0.42 4.78 8.95 -92.71 -0.83 3.95 15 28 H 0.43 2.13 8.95 -92.71 -0.83 1.30 15 Total: -1.00 -72.41 259.09 -0.64 -73.05 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -1.24 Total: 17.60 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.69 Total: 7.96 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.37 Total: -119.26 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.85 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.32 Total: 1.27 kcal Total: -72.41 -0.64 -73.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055189200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds