Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46955 * 2 1 4 4 C 1.50694 * 109.46990 * 240.00425 * 2 1 3 5 5 H 1.08004 * 120.00148 * 239.99580 * 4 2 1 6 6 C 1.37881 * 120.00429 * 59.99892 * 4 2 1 7 7 N 1.31514 * 119.99892 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46600 * 59.99716 * 8 6 4 10 10 H 1.48494 * 109.47096 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46815 * 300.00080 * 8 6 4 12 12 N 1.46496 * 109.47510 * 119.99859 * 2 1 3 13 13 C 1.34774 * 120.00386 * 275.00413 * 12 2 1 14 14 O 1.21655 * 119.99852 * 359.97438 * 13 12 2 15 15 C 1.47169 * 120.00188 * 179.97438 * 13 12 2 16 16 C 1.35053 * 122.47522 * 179.97438 * 15 13 12 17 17 S 1.76181 * 108.25531 * 179.97438 * 16 15 13 18 18 C 1.76052 * 90.17604 * 0.02562 * 17 16 15 19 19 N 1.38465 * 125.18779 * 180.02562 * 18 17 16 20 20 N 1.29441 * 109.62816 * 0.26489 * 18 17 16 21 21 H 1.08994 * 109.46997 * 59.99895 * 1 2 3 22 22 H 1.08994 * 109.46834 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99501 * 1 2 3 24 24 H 0.96992 * 120.00112 * 180.02562 * 7 6 4 25 25 H 0.97006 * 119.99544 * 95.00207 * 12 2 1 26 26 H 1.07999 * 125.87324 * 359.96355 * 16 15 13 27 27 H 0.97005 * 119.99845 * 0.02562 * 19 18 17 28 28 H 0.97000 * 120.00532 * 179.74963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8257 -2.5201 -4.0078 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1622 2.4117 15 6 2.6373 -0.7122 3.5588 16 6 2.7858 -0.0875 4.7470 17 16 3.3892 -1.2601 5.9153 18 6 3.3868 -2.5074 4.6729 19 7 3.7728 -3.8235 4.8628 20 7 2.9739 -2.0053 3.5535 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7081 1.1609 -3.4843 25 1 2.2492 -1.6318 1.1525 26 1 2.5717 0.9520 4.9466 27 1 4.0741 -4.1194 5.7361 28 1 3.7380 -4.4507 4.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055189202.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 5.395905 kcal Electronic energy + Delta-G solvation = -14684.846531 eV Core-core repulsion = 12055.520028 eV Total energy + Delta-G solvation = -2629.326503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82188 -38.01701 -34.87399 -34.50446 -32.28260 -29.36137 -28.79098 -25.24227 -24.79904 -22.10289 -20.30843 -19.63606 -18.68219 -16.73668 -16.42738 -16.19331 -15.44972 -15.05762 -14.91688 -14.20107 -13.61278 -13.29443 -12.89880 -12.32207 -11.91559 -11.61340 -11.07460 -10.99484 -10.86867 -10.66629 -10.29734 -10.17888 -9.74090 -9.29937 -9.21243 -8.99755 -8.50123 -8.02940 -7.77453 -6.07325 -4.16010 0.86296 1.00005 1.62897 2.48497 3.22956 3.29788 3.34265 3.36297 4.04476 4.21257 4.44887 4.87969 5.24855 5.49999 5.69639 6.05653 6.72041 6.88080 7.02011 7.03475 7.19777 7.49131 7.60765 7.73788 7.87076 7.99640 8.19447 8.74301 8.82278 9.15541 9.50918 10.98862 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.005646 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.102510 B = 4957.771979 C = 5487.992777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.573 3.427 14 O -0.550 6.550 15 C 0.069 3.931 16 C -0.213 4.213 17 S 0.048 5.952 18 C 0.345 3.655 19 N -0.818 5.818 20 N -0.523 5.523 21 H 0.091 0.909 22 H 0.027 0.973 23 H 0.015 0.985 24 H 0.265 0.735 25 H 0.398 0.602 26 H 0.187 0.813 27 H 0.413 0.587 28 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -8.454 15.617 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.331 5.331 13 C 0.354 3.646 14 O -0.429 6.429 15 C -0.062 4.062 16 C -0.355 4.355 17 S 0.294 5.706 18 C -0.031 4.031 19 N -0.371 5.371 20 N -0.249 5.249 21 H 0.110 0.890 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.232 0.768 26 H 0.205 0.795 27 H 0.244 0.756 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.941 -7.737 16.011 18.456 hybrid contribution 0.253 -0.918 -1.425 1.714 sum 5.194 -8.655 14.586 17.738 Atomic orbital electron populations 1.22078 0.98269 0.99238 1.00970 1.18828 0.91184 0.94069 0.79887 0.93161 1.21189 1.32400 1.13231 0.90248 0.92036 1.24882 0.94834 0.94972 0.99002 1.69892 1.35887 1.22494 1.23949 0.86490 0.79165 0.79586 0.81746 1.20166 1.21149 1.20178 1.46418 1.62850 1.14137 1.09691 1.17182 0.79048 0.86072 0.82296 1.90776 1.52347 1.15021 1.84749 1.20376 1.02074 0.87982 0.95735 1.26617 1.10480 1.04425 0.93998 1.84796 1.67712 1.02989 1.15128 1.24152 0.96793 0.91215 0.90934 1.41439 1.74131 1.05391 1.16135 1.66652 1.22347 1.12057 1.23891 0.89022 0.95395 0.96556 0.92541 0.76780 0.79541 0.75595 0.75353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 15 2 C 0.26 7.00 2.56 -69.09 -0.18 6.82 15 3 H 0.05 1.52 7.58 -51.92 -0.39 1.13 15 4 C -0.53 -14.66 8.73 -34.44 -0.30 -14.96 15 5 H 0.06 1.63 7.74 -52.48 -0.41 1.23 15 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 15 7 N -0.88 -25.39 11.32 55.43 0.63 -24.77 15 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 15 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 12 N -0.68 -15.85 5.07 -56.09 -0.28 -16.13 15 13 C 0.57 12.80 7.75 -12.64 -0.10 12.70 15 14 O -0.55 -13.81 16.33 5.23 0.09 -13.72 15 15 C 0.07 1.26 6.67 -84.59 -0.56 0.69 15 16 C -0.21 -3.22 10.83 29.60 0.32 -2.90 15 17 S 0.05 0.54 23.41 -107.50 -2.52 -1.98 15 18 C 0.35 4.27 8.82 -88.02 -0.78 3.50 15 19 N -0.82 -6.40 9.07 30.70 0.28 -6.12 15 20 N -0.52 -8.50 10.02 -10.59 -0.11 -8.61 15 21 H 0.09 2.53 6.07 -51.93 -0.32 2.22 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.40 8.56 8.02 -40.82 -0.33 8.23 15 26 H 0.19 2.66 8.01 -52.49 -0.42 2.24 15 27 H 0.41 1.90 8.95 -40.82 -0.37 1.53 15 28 H 0.41 2.91 8.95 -40.82 -0.37 2.54 15 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -32.25 265.91 -6.85 -39.09 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -2.57 Total: 8.03 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.35 Total: 4.12 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.52 Total: -55.63 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.52 Total: -1.98 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.25 -6.85 -39.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055189202.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.491 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds