Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46955 * 2 1 4 4 C 1.50694 * 109.46990 * 240.00425 * 2 1 3 5 5 H 1.08004 * 120.00148 * 239.99580 * 4 2 1 6 6 C 1.37881 * 120.00429 * 59.99892 * 4 2 1 7 7 N 1.31514 * 119.99892 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46600 * 59.99716 * 8 6 4 10 10 H 1.48494 * 109.47096 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46815 * 300.00080 * 8 6 4 12 12 N 1.46496 * 109.47510 * 119.99859 * 2 1 3 13 13 C 1.34774 * 120.00386 * 275.00413 * 12 2 1 14 14 O 1.21655 * 119.99852 * 359.97438 * 13 12 2 15 15 C 1.47169 * 120.00188 * 179.97438 * 13 12 2 16 16 C 1.35053 * 122.47522 * 179.97438 * 15 13 12 17 17 S 1.76181 * 108.25531 * 179.97438 * 16 15 13 18 18 C 1.76052 * 90.17604 * 0.02562 * 17 16 15 19 19 N 1.38465 * 125.18779 * 180.02562 * 18 17 16 20 20 N 1.29441 * 109.62816 * 0.26489 * 18 17 16 21 21 H 1.08994 * 109.46997 * 59.99895 * 1 2 3 22 22 H 1.08994 * 109.46834 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99501 * 1 2 3 24 24 H 0.96992 * 120.00112 * 180.02562 * 7 6 4 25 25 H 0.97006 * 119.99544 * 95.00207 * 12 2 1 26 26 H 1.07999 * 125.87324 * 359.96355 * 16 15 13 27 27 H 0.97005 * 119.99845 * 0.02562 * 19 18 17 28 28 H 0.97000 * 120.00532 * 179.74963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8257 -2.5201 -4.0078 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1622 2.4117 15 6 2.6373 -0.7122 3.5588 16 6 2.7858 -0.0875 4.7470 17 16 3.3892 -1.2601 5.9153 18 6 3.3868 -2.5074 4.6729 19 7 3.7728 -3.8235 4.8628 20 7 2.9739 -2.0053 3.5535 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7081 1.1609 -3.4843 25 1 2.2492 -1.6318 1.1525 26 1 2.5717 0.9520 4.9466 27 1 4.0741 -4.1194 5.7361 28 1 3.7380 -4.4507 4.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055189202.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -19.760050 kcal Electronic energy + Delta-G solvation = -14685.937375 eV Core-core repulsion = 12055.520028 eV Total energy + Delta-G solvation = -2630.417347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22669 -39.52508 -36.77984 -35.50751 -34.30796 -31.08632 -30.22072 -27.36787 -26.18277 -23.53410 -22.05107 -20.97142 -20.18465 -18.43908 -17.56984 -17.19680 -17.14710 -16.69445 -16.33751 -15.98115 -15.17540 -14.93860 -14.41082 -14.10882 -13.72926 -13.09706 -12.93408 -12.85569 -12.75232 -12.28995 -12.16329 -11.92207 -11.14938 -11.09244 -10.71435 -10.60145 -10.28803 -9.81311 -8.90612 -8.18013 -6.35822 -0.29012 0.03665 0.51024 1.19558 1.44502 1.47419 1.55359 2.28856 2.40067 2.47942 2.72819 3.11930 3.66626 4.29861 4.38689 4.70757 4.82967 4.91182 5.06267 5.39828 5.57236 5.65465 5.85094 6.00609 6.07020 6.23013 6.69565 6.84319 7.05979 7.28181 7.44751 8.88531 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.005646 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.102510 B = 4957.771979 C = 5487.992777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.685 5.685 13 C 0.569 3.431 14 O -0.589 6.589 15 C 0.043 3.957 16 C -0.223 4.223 17 S 0.145 5.855 18 C 0.339 3.661 19 N -0.793 5.793 20 N -0.558 5.558 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.014 0.986 24 H 0.267 0.733 25 H 0.407 0.593 26 H 0.188 0.812 27 H 0.431 0.569 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 -10.717 16.974 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.589 4.589 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.332 5.332 13 C 0.353 3.647 14 O -0.471 6.471 15 C -0.088 4.088 16 C -0.367 4.367 17 S 0.392 5.608 18 C -0.038 4.038 19 N -0.348 5.348 20 N -0.287 5.287 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.242 0.758 26 H 0.205 0.795 27 H 0.266 0.734 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.143 -10.075 17.434 21.052 hybrid contribution -0.060 -0.242 -1.660 1.678 sum 6.083 -10.317 15.775 19.806 Atomic orbital electron populations 1.21897 0.97931 0.99474 0.99861 1.18480 0.91437 0.92083 0.81560 0.97813 1.21471 1.32900 1.13639 0.90841 0.91286 1.25810 0.94768 0.95590 1.02248 1.70035 1.36748 1.23821 1.24820 0.85351 0.78623 0.78688 0.77391 1.18892 1.20779 1.19610 1.46191 1.63341 1.14383 1.09259 1.17786 0.77910 0.85779 0.83217 1.90731 1.53955 1.16817 1.85625 1.19703 1.05170 0.89335 0.94612 1.26887 1.09238 1.05718 0.94857 1.84442 1.65512 0.99459 1.11342 1.24438 0.95638 0.92840 0.90877 1.41512 1.72188 1.03679 1.17451 1.66536 1.24672 1.11300 1.26167 0.90943 0.94288 0.96727 0.92362 0.75771 0.79479 0.73418 0.74597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.12 9.26 71.98 0.67 -6.46 15 2 C 0.27 14.88 2.56 44.24 0.11 14.99 15 3 H 0.00 0.25 7.58 -2.38 -0.02 0.24 15 4 C -0.55 -30.81 8.73 25.60 0.22 -30.58 15 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 15 6 C 0.02 0.89 5.30 84.66 0.45 1.34 15 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 15 8 Si 0.98 43.16 29.54 68.60 2.03 45.19 15 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 12 N -0.68 -32.76 5.07 -449.60 -2.28 -35.03 15 13 C 0.57 26.36 7.75 86.59 0.67 27.03 15 14 O -0.59 -31.10 16.33 -4.21 -0.07 -31.17 15 15 C 0.04 1.56 6.67 40.48 0.27 1.83 15 16 C -0.22 -6.53 10.83 67.09 0.73 -5.81 15 17 S 0.15 2.75 23.41 -56.49 -1.32 1.43 15 18 C 0.34 7.45 8.82 179.44 1.58 9.04 15 19 N -0.79 -9.65 9.07 -56.78 -0.52 -10.17 15 20 N -0.56 -17.54 10.02 -187.41 -1.88 -19.42 15 21 H 0.07 4.15 6.07 -2.39 -0.01 4.14 15 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.01 0.73 8.14 -2.39 -0.02 0.71 15 24 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 25 H 0.41 17.83 8.02 -92.70 -0.74 17.09 15 26 H 0.19 5.29 8.01 -2.91 -0.02 5.27 15 27 H 0.43 2.11 8.95 -92.70 -0.83 1.28 15 28 H 0.42 4.58 8.95 -92.71 -0.83 3.75 15 Total: -1.00 -71.97 265.91 -0.26 -72.23 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -1.17 Total: 19.05 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.70 Total: 11.38 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.43 Total: -118.12 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.07 Total: -31.17 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.32 Total: 1.43 kcal Total: -71.97 -0.26 -72.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055189202.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.474 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds