Wall clock time and date at job start Mon Mar 30 2020 03:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76205 * 99.99758 * 2 1 4 4 N 1.32922 * 120.67718 * 0.02562 * 3 2 1 5 5 C 1.33536 * 119.07454 * 179.71087 * 4 3 2 6 6 O 1.22009 * 119.74785 * 180.26042 * 5 4 3 7 7 N 1.34494 * 120.50435 * 0.53937 * 5 4 3 8 8 C 1.46500 * 119.27715 * 179.72030 * 7 5 4 9 9 C 1.50696 * 109.46944 * 274.73115 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47035 * 60.00183 * 13 11 9 15 15 H 1.48503 * 109.46845 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47237 * 299.99939 * 13 11 9 17 17 N 1.28650 * 121.44637 * 359.44736 * 7 5 4 18 18 C 1.30453 * 120.89302 * 0.27189 * 17 7 5 19 19 C 1.50701 * 120.28414 * 180.02562 * 18 17 7 20 20 H 1.08997 * 109.47498 * 300.00163 * 1 2 3 21 21 H 1.09003 * 109.46967 * 60.00367 * 1 2 3 22 22 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46609 * 154.73296 * 8 7 5 24 24 H 1.08999 * 109.46486 * 34.73376 * 8 7 5 25 25 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 26 26 H 1.09001 * 109.47287 * 359.97438 * 19 18 17 27 27 H 1.08996 * 109.47038 * 119.99995 * 19 18 17 28 28 H 1.09006 * 109.46934 * 240.00321 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1078 2.6016 0.0005 5 6 1.3763 3.9097 0.0064 6 8 0.4603 4.7157 0.0117 7 7 2.6487 4.3455 0.0008 8 6 2.9124 5.7866 0.0012 9 6 2.8808 6.3034 -1.4140 10 1 2.6843 5.6261 -2.2320 11 6 3.1037 7.6408 -1.6646 12 7 3.3493 8.4643 -0.6690 13 14 3.0652 8.2814 -3.4189 14 1 1.7279 8.0235 -4.0108 15 1 3.3324 9.7421 -3.4184 16 1 4.1041 7.5878 -4.2220 17 7 3.6392 3.5246 0.0003 18 6 3.4407 2.2353 -0.0001 19 6 4.6112 1.2861 0.0000 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.8941 5.9760 0.4354 24 1 2.1498 6.2952 0.5910 25 1 3.3696 8.1316 0.2419 26 1 5.5407 1.8555 -0.0002 27 1 4.5696 0.6580 0.8897 28 1 4.5700 0.6584 -0.8903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075619482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:58 Heat of formation + Delta-G solvation = 8.574395 kcal Electronic energy + Delta-G solvation = -15058.214303 eV Core-core repulsion = 12429.025630 eV Total energy + Delta-G solvation = -2629.188673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.45078 -39.10973 -37.53149 -35.44258 -34.45105 -30.94493 -29.96566 -28.33620 -27.03178 -25.35818 -24.33355 -20.73354 -19.66019 -19.28656 -18.31978 -17.44343 -16.78559 -15.74697 -15.54059 -15.26595 -15.03945 -14.70775 -14.46589 -14.23918 -13.96462 -13.66227 -13.37900 -13.28600 -13.15130 -12.90741 -12.65012 -12.45136 -11.98801 -11.88473 -11.25658 -10.78036 -10.58247 -9.98314 -9.18792 -8.90410 -6.68140 -0.96589 -0.01326 0.25983 0.89993 1.10387 1.44362 1.52829 1.74462 2.25133 2.43494 2.69925 2.93742 3.17431 3.56679 4.14346 4.25113 4.32914 4.38009 4.52738 4.63797 4.78339 4.89678 4.95653 5.23307 5.41121 5.50455 5.80786 6.21402 6.59084 7.01159 7.08695 8.46669 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.006597 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.325313 B = 4243.179723 C = 4478.230562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S 0.109 5.891 3 C 0.176 3.824 4 N -0.545 5.545 5 C 0.589 3.411 6 O -0.572 6.572 7 N -0.352 5.352 8 C 0.250 3.750 9 C -0.628 4.628 10 H 0.038 0.962 11 C -0.016 4.016 12 N -0.915 5.915 13 Si 1.123 2.877 14 H -0.280 1.280 15 H -0.268 1.268 16 H -0.261 1.261 17 N -0.188 5.188 18 C 0.016 3.984 19 C -0.084 4.084 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.150 0.850 23 H 0.050 0.950 24 H 0.025 0.975 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -22.207 0.987 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.343 5.657 3 C -0.100 4.100 4 N -0.293 5.293 5 C 0.287 3.713 6 O -0.447 6.447 7 N -0.176 5.176 8 C 0.130 3.870 9 C -0.666 4.666 10 H 0.057 0.943 11 C -0.216 4.216 12 N -0.550 5.550 13 Si 0.942 3.058 14 H -0.206 1.206 15 H -0.193 1.193 16 H -0.186 1.186 17 N -0.019 5.019 18 C -0.159 4.159 19 C -0.143 4.143 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.168 0.832 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.157 -20.588 0.114 20.701 hybrid contribution -1.359 0.187 1.247 1.853 sum 0.798 -20.401 1.361 20.462 Atomic orbital electron populations 1.23875 0.93637 1.08833 1.07024 1.85255 1.08160 0.88540 1.83739 1.26329 0.92471 1.04202 0.87009 1.70794 1.31743 0.99936 1.26850 1.18768 0.82939 0.88471 0.81165 1.90940 1.44129 1.54639 1.55026 1.47458 1.04172 1.10080 1.55884 1.19561 0.97090 0.71247 0.99107 1.22170 1.55628 0.97380 0.91376 0.94333 1.27462 0.91536 0.92744 1.09891 1.70924 1.45644 1.37942 1.00480 0.82890 0.77721 0.76559 0.68676 1.20552 1.19264 1.18574 1.71390 1.20476 1.03577 1.06474 1.23570 0.96621 0.90485 1.05271 1.20842 0.91563 0.95530 1.06326 0.89564 0.89850 0.83194 0.93212 0.95756 0.93162 0.89117 0.86395 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.69 113.37 1.10 -1.51 15 2 S 0.11 1.79 21.82 -56.49 -1.23 0.56 15 3 C 0.18 5.37 7.05 85.36 0.60 5.97 15 4 N -0.54 -22.66 9.50 -320.46 -3.04 -25.70 15 5 C 0.59 30.92 8.32 179.53 1.49 32.42 15 6 O -0.57 -35.09 16.78 -5.34 -0.09 -35.18 15 7 N -0.35 -17.98 3.22 -483.30 -1.55 -19.53 15 8 C 0.25 14.35 4.57 85.63 0.39 14.75 15 9 C -0.63 -38.49 9.34 25.60 0.24 -38.25 15 10 H 0.04 2.42 7.81 -2.91 -0.02 2.40 15 11 C -0.02 -0.97 5.46 84.66 0.46 -0.50 15 12 N -0.91 -56.75 13.65 21.45 0.29 -56.46 15 13 Si 1.12 51.91 29.90 68.60 2.05 53.96 15 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 17 N -0.19 -7.87 10.90 -46.47 -0.51 -8.38 15 18 C 0.02 0.50 6.92 43.59 0.30 0.80 15 19 C -0.08 -1.42 9.25 71.24 0.66 -0.76 15 20 H 0.09 1.63 8.14 -2.40 -0.02 1.61 15 21 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.15 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.05 2.79 7.98 -2.39 -0.02 2.78 15 24 H 0.02 1.53 7.37 -2.39 -0.02 1.51 15 25 H 0.26 16.12 7.22 -92.71 -0.67 15.45 15 26 H 0.09 1.57 8.12 -2.39 -0.02 1.55 15 27 H 0.12 1.27 8.14 -2.39 -0.02 1.25 15 28 H 0.11 1.35 8.14 -2.38 -0.02 1.33 15 Total: -1.00 -83.07 266.90 2.44 -80.63 By element: Atomic # 1 Polarization: -4.09 SS G_CDS: 1.28 Total: -2.81 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.25 Total: 12.90 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.81 Total: -110.07 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.09 Total: -35.18 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.23 Total: 0.56 kcal Total: -83.07 2.44 -80.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075619482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.206 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds