Wall clock time and date at job start Mon Mar 30 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38115 * 120.81662 * 2 1 4 4 N 1.32536 * 119.21440 * 180.29811 * 3 2 1 5 5 C 1.31925 * 120.99730 * 359.44379 * 4 3 2 6 6 Cl 1.73598 * 119.10524 * 180.29260 * 5 4 3 7 7 N 1.31879 * 121.79359 * 0.57239 * 5 4 3 8 8 C 1.32986 * 120.67441 * 359.71798 * 7 5 4 9 9 N 1.38530 * 120.52655 * 180.02562 * 8 7 5 10 10 C 1.46904 * 110.99826 * 59.56299 * 9 8 7 11 11 C 1.46903 * 111.00082 * 295.61318 * 9 8 7 12 12 C 1.50697 * 109.47145 * 189.99686 * 11 9 8 13 13 H 1.07999 * 120.00297 * 0.02562 * 12 11 9 14 14 C 1.37885 * 119.99923 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99606 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47308 * 59.99890 * 16 14 12 18 18 H 1.48500 * 109.46640 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47294 * 299.99705 * 16 14 12 20 20 H 1.08999 * 109.46744 * 89.17357 * 1 2 3 21 21 H 1.09001 * 109.46740 * 209.17482 * 1 2 3 22 22 H 1.09002 * 109.46698 * 329.17411 * 1 2 3 23 23 H 1.08001 * 120.39320 * 0.03604 * 3 2 1 24 24 H 1.08995 * 109.47091 * 54.11342 * 10 9 8 25 25 H 1.09004 * 109.46979 * 174.11311 * 10 9 8 26 26 H 1.09004 * 109.47056 * 294.10739 * 10 9 8 27 27 H 1.09005 * 109.47102 * 309.99787 * 11 9 8 28 28 H 1.08999 * 109.47004 * 69.99719 * 11 9 8 29 29 H 0.97003 * 119.99352 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2146 1.1861 0.0000 4 7 3.5395 1.1491 -0.0060 5 6 4.1870 -0.0003 -0.0010 6 17 5.9230 0.0086 -0.0015 7 7 3.5515 -1.1558 -0.0011 8 6 2.2224 -1.1991 -0.0006 9 7 1.5579 -2.4147 -0.0001 10 6 1.9155 -3.2096 1.1824 11 6 1.8252 -3.1613 -1.2367 12 6 0.9049 -4.3521 -1.3135 13 1 0.1923 -4.5357 -0.5230 14 6 0.9718 -5.2066 -2.3935 15 7 1.8385 -4.9821 -3.3569 16 14 -0.1696 -6.6823 -2.4890 17 1 -1.5802 -6.2181 -2.4856 18 1 0.1008 -7.4369 -3.7391 19 1 0.0638 -7.5652 -1.3181 20 1 -0.3633 0.0148 -1.0276 21 1 -0.3633 -0.8973 0.5010 22 1 -0.3633 0.8825 0.5266 23 1 1.6945 2.1326 0.0006 24 1 1.7399 -2.6208 2.0826 25 1 1.3035 -4.1111 1.2128 26 1 2.9683 -3.4869 1.1290 27 1 1.6538 -2.5135 -2.0965 28 1 2.8607 -3.5017 -1.2390 29 1 1.8858 -5.5835 -4.1165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085786664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:45 Heat of formation + Delta-G solvation = 49.028857 kcal Electronic energy + Delta-G solvation = -15012.395060 eV Core-core repulsion = 12382.916917 eV Total energy + Delta-G solvation = -2629.478143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95596 -37.14953 -36.48847 -33.47494 -33.05410 -31.92467 -27.54056 -27.13518 -25.84104 -23.54667 -22.47142 -21.08704 -17.87647 -17.23937 -16.35322 -15.38551 -14.78652 -14.47823 -14.25295 -13.95552 -13.57473 -13.08269 -12.93517 -12.13085 -12.03412 -11.53115 -11.43466 -11.28699 -11.08560 -10.95194 -10.90601 -10.69084 -10.43852 -10.01707 -9.49947 -9.07986 -8.78513 -8.56816 -7.88171 -6.12376 -4.16112 0.96808 1.18942 1.63877 3.28272 3.32921 3.34741 3.78513 4.07694 4.34156 4.44508 4.87507 5.10659 5.15350 5.23859 5.38311 5.85430 5.89624 6.01020 6.21239 6.25188 6.53378 6.56076 7.01788 7.05602 7.19639 7.61506 7.71816 7.95939 8.08748 8.30940 8.89030 9.48105 10.98415 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.006752 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.802550 B = 4146.218707 C = 4665.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.165 4.165 3 C 0.152 3.848 4 N -0.520 5.520 5 C 0.363 3.637 6 Cl 0.006 6.994 7 N -0.529 5.529 8 C 0.377 3.623 9 N -0.488 5.488 10 C 0.042 3.958 11 C 0.201 3.799 12 C -0.515 4.515 13 H 0.067 0.933 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.903 3.097 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.062 0.938 23 H 0.175 0.825 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.012 0.988 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 10.142 7.384 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.172 4.172 3 C -0.012 4.012 4 N -0.238 5.238 5 C 0.067 3.933 6 Cl 0.033 6.967 7 N -0.249 5.249 8 C 0.140 3.860 9 N -0.212 5.212 10 C -0.105 4.105 11 C 0.078 3.922 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.095 0.905 21 H 0.107 0.893 22 H 0.081 0.919 23 H 0.192 0.808 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.797 10.128 7.207 12.456 hybrid contribution -0.266 -1.004 -0.325 1.088 sum 0.531 9.124 6.882 11.441 Atomic orbital electron populations 1.20535 0.88156 1.03301 1.03151 1.21591 0.99916 0.93079 1.02577 1.22955 0.87920 0.98302 0.91973 1.67795 1.10308 1.29280 1.16369 1.22710 0.89171 0.85325 0.96059 1.98402 1.03553 1.98415 1.96281 1.68200 1.11862 1.29612 1.15267 1.20586 0.84739 0.93945 0.86743 1.60555 1.51265 1.02205 1.07160 1.22236 1.00357 0.97936 0.90013 1.19855 0.96826 0.92324 0.83154 1.21006 1.19528 1.08286 1.06556 0.91520 1.24985 0.95767 0.98179 0.95410 1.69961 1.35406 1.38070 1.09812 0.86489 0.80981 0.82148 0.77380 1.20053 1.21283 1.20126 0.90514 0.89348 0.91900 0.80785 0.93572 0.89484 0.94555 0.95346 0.96965 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.84 36.01 0.35 -0.86 15 2 C -0.17 -2.62 5.93 -104.15 -0.62 -3.24 15 3 C 0.15 2.15 10.99 -17.29 -0.19 1.96 15 4 N -0.52 -8.61 10.40 -11.72 -0.12 -8.73 15 5 C 0.36 6.62 8.18 -91.97 -0.75 5.87 15 6 Cl 0.01 0.09 29.27 -51.86 -1.52 -1.42 15 7 N -0.53 -10.76 9.92 -10.87 -0.11 -10.86 15 8 C 0.38 7.38 5.26 -154.79 -0.81 6.57 15 9 N -0.49 -10.31 3.80 -182.25 -0.69 -11.00 15 10 C 0.04 0.80 9.13 60.07 0.55 1.35 15 11 C 0.20 5.19 4.54 -4.98 -0.02 5.17 15 12 C -0.52 -13.89 8.54 -34.44 -0.29 -14.18 15 13 H 0.07 1.73 7.10 -52.49 -0.37 1.36 15 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 15 N -0.89 -26.21 13.29 55.43 0.74 -25.47 15 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.09 1.26 7.54 -51.93 -0.39 0.87 15 22 H 0.06 0.60 8.11 -51.93 -0.42 0.18 15 23 H 0.18 1.67 8.06 -52.49 -0.42 1.25 15 24 H 0.05 0.76 8.10 -51.93 -0.42 0.34 15 25 H 0.09 1.67 6.91 -51.93 -0.36 1.31 15 26 H 0.04 0.73 8.00 -51.93 -0.42 0.31 15 27 H 0.03 0.80 8.05 -51.93 -0.42 0.38 15 28 H 0.01 0.35 8.11 -51.93 -0.42 -0.07 15 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -30.08 271.84 -7.71 -37.79 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -3.20 Total: -4.49 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.89 Total: 4.16 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.19 Total: -56.08 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.52 Total: -1.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.08 -7.71 -37.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085786664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.824 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds