Wall clock time and date at job start Mon Mar 30 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38115 * 120.81662 * 2 1 4 4 N 1.32536 * 119.21440 * 180.29811 * 3 2 1 5 5 C 1.31925 * 120.99730 * 359.44379 * 4 3 2 6 6 Cl 1.73598 * 119.10524 * 180.29260 * 5 4 3 7 7 N 1.31879 * 121.79359 * 0.57239 * 5 4 3 8 8 C 1.32986 * 120.67441 * 359.71798 * 7 5 4 9 9 N 1.38530 * 120.52655 * 180.02562 * 8 7 5 10 10 C 1.46904 * 110.99826 * 59.56299 * 9 8 7 11 11 C 1.46903 * 111.00082 * 295.61318 * 9 8 7 12 12 C 1.50697 * 109.47145 * 189.99686 * 11 9 8 13 13 H 1.07999 * 120.00297 * 0.02562 * 12 11 9 14 14 C 1.37885 * 119.99923 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99606 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47308 * 59.99890 * 16 14 12 18 18 H 1.48500 * 109.46640 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47294 * 299.99705 * 16 14 12 20 20 H 1.08999 * 109.46744 * 89.17357 * 1 2 3 21 21 H 1.09001 * 109.46740 * 209.17482 * 1 2 3 22 22 H 1.09002 * 109.46698 * 329.17411 * 1 2 3 23 23 H 1.08001 * 120.39320 * 0.03604 * 3 2 1 24 24 H 1.08995 * 109.47091 * 54.11342 * 10 9 8 25 25 H 1.09004 * 109.46979 * 174.11311 * 10 9 8 26 26 H 1.09004 * 109.47056 * 294.10739 * 10 9 8 27 27 H 1.09005 * 109.47102 * 309.99787 * 11 9 8 28 28 H 1.08999 * 109.47004 * 69.99719 * 11 9 8 29 29 H 0.97003 * 119.99352 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2146 1.1861 0.0000 4 7 3.5395 1.1491 -0.0060 5 6 4.1870 -0.0003 -0.0010 6 17 5.9230 0.0086 -0.0015 7 7 3.5515 -1.1558 -0.0011 8 6 2.2224 -1.1991 -0.0006 9 7 1.5579 -2.4147 -0.0001 10 6 1.9155 -3.2096 1.1824 11 6 1.8252 -3.1613 -1.2367 12 6 0.9049 -4.3521 -1.3135 13 1 0.1923 -4.5357 -0.5230 14 6 0.9718 -5.2066 -2.3935 15 7 1.8385 -4.9821 -3.3569 16 14 -0.1696 -6.6823 -2.4890 17 1 -1.5802 -6.2181 -2.4856 18 1 0.1008 -7.4369 -3.7391 19 1 0.0638 -7.5652 -1.3181 20 1 -0.3633 0.0148 -1.0276 21 1 -0.3633 -0.8973 0.5010 22 1 -0.3633 0.8825 0.5266 23 1 1.6945 2.1326 0.0006 24 1 1.7399 -2.6208 2.0826 25 1 1.3035 -4.1111 1.2128 26 1 2.9683 -3.4869 1.1290 27 1 1.6538 -2.5135 -2.0965 28 1 2.8607 -3.5017 -1.2390 29 1 1.8858 -5.5835 -4.1165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085786664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:45 Heat of formation + Delta-G solvation = 29.742129 kcal Electronic energy + Delta-G solvation = -15013.231395 eV Core-core repulsion = 12382.916917 eV Total energy + Delta-G solvation = -2630.314478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.31555 -38.68682 -37.85217 -34.98673 -34.74021 -33.50487 -29.48229 -28.41069 -27.37063 -25.27355 -23.79014 -22.77138 -19.26854 -18.82887 -18.25608 -17.00896 -16.37310 -16.14103 -15.47510 -15.41185 -15.20581 -14.67382 -14.10132 -13.99569 -13.30722 -13.06684 -12.94563 -12.71620 -12.67632 -12.55672 -12.49344 -12.20562 -12.17360 -11.74158 -11.45222 -10.66326 -10.47815 -10.06391 -9.65642 -8.24163 -6.36359 -0.37270 -0.11886 0.32821 1.43680 1.47012 1.54915 2.35867 2.46511 2.68750 3.10120 3.13331 3.56237 3.82916 3.95011 4.12531 4.46065 4.60010 4.89110 4.91728 4.97260 5.03795 5.09228 5.13698 5.49092 5.59190 5.72343 5.88449 5.92967 6.41971 6.73075 6.77646 7.33763 8.87674 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.006752 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.802550 B = 4146.218707 C = 4665.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.158 4.158 3 C 0.168 3.832 4 N -0.519 5.519 5 C 0.346 3.654 6 Cl 0.016 6.984 7 N -0.563 5.563 8 C 0.336 3.664 9 N -0.482 5.482 10 C 0.047 3.953 11 C 0.224 3.776 12 C -0.525 4.525 13 H 0.077 0.923 14 C 0.003 3.997 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.265 1.265 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.108 0.892 23 H 0.231 0.769 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.017 0.983 27 H -0.004 1.004 28 H -0.030 1.030 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 11.339 8.361 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.004 3.996 4 N -0.236 5.236 5 C 0.051 3.949 6 Cl 0.044 6.956 7 N -0.284 5.284 8 C 0.101 3.899 9 N -0.205 5.205 10 C -0.100 4.100 11 C 0.099 3.901 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.195 4.195 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.190 1.190 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.127 0.873 23 H 0.247 0.753 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.035 0.965 27 H 0.014 0.986 28 H -0.012 1.012 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.009 11.334 8.214 14.034 hybrid contribution 0.344 -1.241 -0.595 1.418 sum -0.665 10.094 7.619 12.664 Atomic orbital electron populations 1.20618 0.85860 1.04785 1.03504 1.21964 1.01476 0.92111 1.00806 1.23867 0.86992 0.99699 0.89068 1.67938 1.11555 1.28171 1.15977 1.22901 0.89904 0.85343 0.96779 1.98394 1.02557 1.98397 1.96248 1.68026 1.12731 1.31174 1.16428 1.20801 0.85096 0.94325 0.89709 1.60421 1.51767 1.02559 1.05713 1.22219 0.99000 0.98281 0.90544 1.19332 0.94208 0.91998 0.84523 1.21353 1.19557 1.08628 1.06794 0.90526 1.25978 0.97286 1.01377 0.94876 1.70117 1.37399 1.39481 1.10610 0.85333 0.79047 0.78134 0.77500 1.18687 1.21290 1.18990 0.90601 0.90872 0.87330 0.75292 0.90534 0.89808 0.96458 0.98602 1.01176 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.84 71.24 0.70 -1.36 15 2 C -0.16 -4.67 5.93 -19.56 -0.12 -4.79 15 3 C 0.17 4.16 10.99 84.56 0.93 5.09 15 4 N -0.52 -16.13 10.40 -190.99 -1.99 -18.12 15 5 C 0.35 12.52 8.18 180.82 1.48 14.00 15 6 Cl 0.02 0.52 29.27 -2.72 -0.08 0.44 15 7 N -0.56 -23.33 9.92 -188.31 -1.87 -25.19 15 8 C 0.34 13.19 5.26 133.17 0.70 13.89 15 9 N -0.48 -20.70 3.80 -730.51 -2.78 -23.48 15 10 C 0.05 1.80 9.13 127.69 1.17 2.96 15 11 C 0.22 12.07 4.54 85.56 0.39 12.45 15 12 C -0.53 -28.80 8.54 25.60 0.22 -28.58 15 13 H 0.08 3.96 7.10 -2.91 -0.02 3.94 15 14 C 0.00 0.18 5.46 84.66 0.46 0.65 15 15 N -0.94 -56.46 13.29 21.45 0.28 -56.18 15 16 Si 0.98 42.96 29.54 68.60 2.03 44.98 15 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 15 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 20 H 0.08 1.79 8.14 -2.39 -0.02 1.78 15 21 H 0.07 1.93 7.54 -2.39 -0.02 1.92 15 22 H 0.11 1.50 8.11 -2.39 -0.02 1.48 15 23 H 0.23 3.02 8.06 -2.91 -0.02 2.99 15 24 H 0.08 2.46 8.10 -2.39 -0.02 2.44 15 25 H 0.08 3.23 6.91 -2.38 -0.02 3.21 15 26 H 0.02 0.71 8.00 -2.39 -0.02 0.69 15 27 H 0.00 -0.24 8.05 -2.38 -0.02 -0.26 15 28 H -0.03 -1.81 8.11 -2.39 -0.02 -1.83 15 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 Total: -1.00 -67.79 271.84 2.69 -65.10 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: 1.16 Total: -1.87 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.93 Total: 14.31 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.35 Total: -122.97 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -67.79 2.69 -65.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085786664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.846 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds