Wall clock time and date at job start Mon Mar 30 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99929 * 2 1 4 4 H 1.48502 * 109.47215 * 274.98744 * 3 2 1 5 5 H 1.48497 * 109.47200 * 34.98773 * 3 2 1 6 6 H 1.48504 * 109.46853 * 154.99037 * 3 2 1 7 7 C 1.37877 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00522 * 187.12104 * 7 2 1 9 9 C 1.50706 * 119.99383 * 7.12023 * 7 2 1 10 10 H 1.08993 * 109.47281 * 305.06667 * 9 7 2 11 11 C 1.52999 * 109.47164 * 65.07286 * 9 7 2 12 12 N 1.46897 * 109.47280 * 183.69822 * 11 9 7 13 13 C 1.50700 * 109.46703 * 185.06698 * 9 7 2 14 14 C 1.38340 * 120.44835 * 304.90836 * 13 9 7 15 15 C 1.38927 * 118.49621 * 180.02562 * 14 13 9 16 16 Cl 1.73603 * 120.34656 * 179.97438 * 15 14 13 17 17 C 1.38165 * 119.30437 * 0.02562 * 15 14 13 18 18 N 1.31950 * 120.83627 * 359.97438 * 17 15 14 19 19 C 1.32416 * 121.63609 * 359.97438 * 18 17 15 20 20 N 1.39065 * 119.69294 * 179.72408 * 19 18 17 21 21 H 0.97006 * 119.99909 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46656 * 303.69544 * 11 9 7 23 23 H 1.09000 * 109.47383 * 63.69051 * 11 9 7 24 24 H 1.00897 * 111.00129 * 56.03853 * 12 11 9 25 25 H 1.00894 * 111.00333 * 180.02562 * 12 11 9 26 26 H 1.07998 * 120.75172 * 0.04265 * 14 13 9 27 27 H 1.08000 * 119.58624 * 179.97438 * 17 15 14 28 28 H 0.97008 * 119.99982 * 354.05938 * 20 19 18 29 29 H 0.97000 * 120.00203 * 174.06017 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1977 0.1154 9 6 1.2597 -2.4940 -0.1629 10 1 0.4805 -2.5636 0.5961 11 6 0.6236 -2.5471 -1.5534 12 7 -0.1753 -3.7733 -1.6799 13 6 2.2189 -3.6456 -0.0051 14 6 3.3556 -3.7237 -0.7898 15 6 4.2116 -4.8031 -0.6107 16 17 5.6512 -4.9494 -1.5699 17 6 3.9047 -5.7596 0.3380 18 7 2.8129 -5.6582 1.0719 19 6 1.9732 -4.6441 0.9314 20 7 0.8312 -4.5805 1.7225 21 1 -0.4850 0.8401 0.0004 22 1 -0.0199 -1.6783 -1.6918 23 1 1.4066 -2.5437 -2.3116 24 1 -0.8673 -3.8312 -0.9479 25 1 -0.6059 -3.8321 -2.5905 26 1 3.5726 -2.9627 -1.5247 27 1 4.5668 -6.6008 0.4807 28 1 0.6076 -5.3182 2.3115 29 1 0.2583 -3.7987 1.6854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260832493.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:14 Heat of formation + Delta-G solvation = 20.639486 kcal Electronic energy + Delta-G solvation = -15234.565102 eV Core-core repulsion = 12603.855904 eV Total energy + Delta-G solvation = -2630.709198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71596 -36.17193 -35.47651 -33.83002 -32.31956 -31.66867 -29.00064 -27.29531 -24.16542 -23.11039 -21.93269 -19.80679 -17.36761 -16.91199 -16.25395 -15.48924 -14.75519 -14.50815 -14.37295 -13.83233 -13.56812 -13.14365 -12.47178 -12.17878 -12.02662 -11.79068 -11.41731 -11.05635 -10.84242 -10.71537 -10.24869 -10.01104 -9.85209 -9.43323 -8.85829 -8.67898 -8.55518 -7.73895 -7.00736 -6.22376 -4.26205 1.89104 2.04917 2.71193 3.20694 3.28919 3.33216 4.16030 4.28953 4.53779 5.09115 5.22565 5.54225 5.58966 5.72081 5.93375 6.28657 6.52400 6.65806 6.71408 6.85516 7.16423 7.30283 7.57774 7.74571 7.86066 7.93007 8.02841 8.18797 8.27330 8.76994 8.80877 9.39304 10.84810 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.008900 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.452993 B = 3145.198213 C = 3754.433935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.095 3.905 10 H 0.039 0.961 11 C 0.071 3.929 12 N -0.855 5.855 13 C -0.107 4.107 14 C -0.031 4.031 15 C -0.143 4.143 16 Cl -0.091 7.091 17 C 0.128 3.872 18 N -0.542 5.542 19 C 0.403 3.597 20 N -0.848 5.848 21 H 0.263 0.737 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.329 0.671 25 H 0.321 0.679 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.393 0.607 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -7.036 -0.807 7.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.075 3.925 10 H 0.057 0.943 11 C -0.059 4.059 12 N -0.382 5.382 13 C -0.114 4.114 14 C -0.057 4.057 15 C -0.175 4.175 16 Cl -0.063 7.063 17 C -0.029 4.029 18 N -0.260 5.260 19 C 0.165 3.835 20 N -0.394 5.394 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.221 0.779 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.877 -7.912 -0.176 8.420 hybrid contribution -0.346 2.275 -0.672 2.397 sum 2.531 -5.637 -0.848 6.237 Atomic orbital electron populations 1.69919 1.05945 1.26969 1.49831 1.24966 0.94865 0.99264 0.94515 0.86563 0.80142 0.83183 0.78163 1.20532 1.21195 1.19652 1.21150 0.93883 0.89743 1.50551 0.92031 1.17666 0.92059 0.89376 0.93392 0.94294 1.21978 0.96031 0.89226 0.98684 1.58986 1.30186 1.42587 1.06431 1.20635 0.97624 0.97817 0.95294 1.21056 0.91673 0.95057 0.97927 1.21625 0.92844 1.01347 1.01698 1.98296 1.38323 1.97946 1.71714 1.21953 0.93202 0.96826 0.90903 1.67177 1.05281 1.25135 1.28411 1.18247 0.86976 0.89375 0.88898 1.42336 1.25598 1.24215 1.47207 0.92773 0.93251 0.93365 0.86039 0.86874 0.84556 0.83338 0.77867 0.75366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 12.02 55.43 0.67 -22.59 15 2 C 0.07 1.70 5.21 -17.82 -0.09 1.60 15 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.51 -13.00 8.12 -34.44 -0.28 -13.28 15 8 H 0.06 1.59 7.41 -52.49 -0.39 1.20 15 9 C 0.09 2.13 1.93 -92.92 -0.18 1.95 15 10 H 0.04 0.91 5.67 -51.93 -0.29 0.62 15 11 C 0.07 1.52 5.97 -3.83 -0.02 1.50 15 12 N -0.85 -15.50 9.30 -10.37 -0.10 -15.60 15 13 C -0.11 -2.23 4.48 -104.27 -0.47 -2.69 15 14 C -0.03 -0.62 8.45 -39.29 -0.33 -0.96 15 15 C -0.14 -2.58 6.34 -39.35 -0.25 -2.83 15 16 Cl -0.09 -1.43 28.98 -51.86 -1.50 -2.93 15 17 C 0.13 2.24 10.97 -17.53 -0.19 2.05 15 18 N -0.54 -10.22 10.39 -12.40 -0.13 -10.35 15 19 C 0.40 7.84 7.73 -154.96 -1.20 6.64 15 20 N -0.85 -14.00 9.00 31.13 0.28 -13.72 15 21 H 0.26 6.64 8.31 -40.82 -0.34 6.30 15 22 H 0.05 1.17 6.69 -51.93 -0.35 0.83 15 23 H 0.05 1.05 7.64 -51.93 -0.40 0.65 15 24 H 0.33 5.74 8.99 -39.29 -0.35 5.39 15 25 H 0.32 5.17 9.08 -39.29 -0.36 4.81 15 26 H 0.14 2.75 7.84 -52.49 -0.41 2.33 15 27 H 0.15 2.15 8.06 -52.49 -0.42 1.73 15 28 H 0.39 5.51 8.95 -40.82 -0.37 5.15 15 29 H 0.41 6.90 6.46 -40.82 -0.26 6.63 15 LS Contribution 264.88 15.07 3.99 3.99 Total: -1.00 -26.59 264.88 -7.56 -34.15 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -2.74 Total: 17.88 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.01 Total: -6.02 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.72 Total: -62.26 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.59 -7.56 -34.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260832493.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.793 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds