Wall clock time and date at job start Mon Mar 30 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34894 * 116.99918 * 2 1 4 4 O 1.21599 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.46324 * 119.99736 * 179.97438 * 3 2 1 6 6 C 1.35586 * 119.99797 * 180.02562 * 5 3 2 7 7 N 1.39328 * 122.32713 * 359.97438 * 6 5 3 8 8 C 1.47330 * 116.54083 * 219.84401 * 7 6 5 9 9 C 1.53247 * 108.78860 * 310.32228 * 8 7 6 10 10 H 1.08996 * 109.47498 * 295.03644 * 9 8 7 11 11 C 1.50703 * 109.47218 * 175.03574 * 9 8 7 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 O 1.45619 * 109.46259 * 55.04101 * 9 8 7 20 20 C 1.35870 * 115.25363 * 304.32377 * 19 9 8 21 21 O 1.21385 * 121.98656 * 225.63251 * 20 19 9 22 22 H 1.08997 * 109.47243 * 300.00137 * 1 2 3 23 23 H 1.09000 * 109.46903 * 59.99990 * 1 2 3 24 24 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00304 * 0.02562 * 5 3 2 26 26 H 0.96993 * 121.73284 * 39.86642 * 7 6 5 27 27 H 1.08997 * 109.58956 * 190.52826 * 8 7 6 28 28 H 1.08999 * 109.58382 * 70.11035 * 8 7 6 29 29 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2218 0.0005 5 6 3.5257 1.2785 0.0006 6 6 4.1412 2.4865 0.0011 7 7 3.4305 3.6849 0.0006 8 6 3.9657 4.7674 -0.8434 9 6 5.4595 4.9335 -0.5447 10 1 5.5892 5.2703 0.4838 11 6 6.0496 5.9526 -1.4850 12 1 5.4234 6.4342 -2.2215 13 6 7.3890 6.2702 -1.4052 14 7 8.1514 5.6842 -0.5081 15 14 8.1202 7.5339 -2.5704 16 1 8.6097 6.8526 -3.7958 17 1 9.2521 8.2259 -1.9032 18 1 7.0802 8.5280 -2.9386 19 8 6.1356 3.6566 -0.7263 20 6 5.6325 2.6256 0.0017 21 8 6.3492 1.8623 0.6159 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 4.1139 0.3727 0.0006 26 1 2.6252 3.8006 0.5288 27 1 3.4428 5.6973 -0.6202 28 1 3.8294 4.5126 -1.8944 29 1 7.7715 5.0282 0.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260923510.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:25 Heat of formation + Delta-G solvation = -143.218515 kcal Electronic energy + Delta-G solvation = -17226.739316 eV Core-core repulsion = 14115.922786 eV Total energy + Delta-G solvation = -3110.816530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34710 -39.56360 -37.02345 -36.48740 -35.02407 -33.15803 -31.50700 -28.77560 -27.52409 -24.73731 -24.28704 -22.40142 -21.00288 -18.98425 -17.91732 -17.55378 -16.96375 -16.26942 -16.19898 -15.63740 -15.29983 -14.65255 -14.27356 -13.89755 -13.59121 -13.28239 -13.17402 -12.65095 -12.30935 -12.00104 -11.54910 -11.25323 -10.92214 -10.77798 -10.54095 -10.48704 -10.25519 -10.00464 -9.46740 -8.95563 -8.73720 -7.71666 -6.74096 -4.60761 0.92499 2.54109 2.79449 3.20256 3.30568 3.32782 3.48250 3.60408 3.89844 4.27822 4.65144 5.04762 5.11574 5.17440 5.27868 5.47503 5.53504 5.80210 5.94326 5.96882 6.03326 6.42555 6.58400 7.04545 7.50468 7.72838 7.90851 7.95868 8.04433 8.07899 8.44379 9.22848 10.65104 Molecular weight = 241.08amu Principal moments of inertia in cm(-1) A = 0.048457 B = 0.005807 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.694822 B = 4820.856458 C = 5232.357369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.527 6.527 5 C -0.260 4.260 6 C 0.199 3.801 7 N -0.729 5.729 8 C 0.098 3.902 9 C 0.187 3.813 10 H 0.041 0.959 11 C -0.604 4.604 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.862 5.862 15 Si 1.078 2.922 16 H -0.282 1.282 17 H -0.280 1.280 18 H -0.284 1.284 19 O -0.354 6.354 20 C 0.506 3.494 21 O -0.454 6.454 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.152 0.848 26 H 0.415 0.585 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -5.415 0.275 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.358 3.642 4 O -0.418 6.418 5 C -0.289 4.289 6 C 0.088 3.912 7 N -0.367 5.367 8 C -0.025 4.025 9 C 0.136 3.864 10 H 0.058 0.942 11 C -0.640 4.640 12 H 0.091 0.909 13 C -0.177 4.177 14 N -0.494 5.494 15 Si 0.904 3.096 16 H -0.208 1.208 17 H -0.205 1.205 18 H -0.210 1.210 19 O -0.273 6.273 20 C 0.344 3.656 21 O -0.336 6.336 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.169 0.831 26 H 0.256 0.744 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.100 -4.560 -0.028 11.082 hybrid contribution -2.229 -0.898 0.660 2.492 sum -12.329 -5.457 0.632 13.498 Atomic orbital electron populations 1.23177 0.76841 1.03241 1.02309 1.86616 1.22901 1.33102 1.84962 1.21028 0.89307 0.81022 0.72887 1.90724 1.67314 1.35727 1.48079 1.21509 0.89978 0.97481 1.19895 1.21439 0.92330 0.87471 0.89983 1.45446 1.30509 1.10689 1.50057 1.22475 0.95960 0.89519 0.94510 1.21451 0.87456 0.78509 0.98983 0.94150 1.21909 0.98441 1.20767 1.22842 0.90889 1.26157 0.93831 0.99385 0.98364 1.70661 1.39012 1.23845 1.15898 0.83410 0.75944 0.74997 0.75207 1.20835 1.20517 1.20954 1.87637 1.60603 1.19489 1.59570 1.21887 0.85973 0.81957 0.75779 1.90744 1.62822 1.44527 1.35527 0.92177 0.92117 0.88406 0.83062 0.74355 0.88824 0.91118 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.45 15 2 O -0.36 -5.02 10.58 -41.02 -0.43 -5.45 15 3 C 0.51 8.19 7.89 33.98 0.27 8.46 15 4 O -0.53 -9.13 13.86 -19.34 -0.27 -9.39 15 5 C -0.26 -4.36 9.93 -37.28 -0.37 -4.73 15 6 C 0.20 3.75 6.48 -80.57 -0.52 3.23 15 7 N -0.73 -13.01 5.00 -55.61 -0.28 -13.29 15 8 C 0.10 1.86 6.44 -3.46 -0.02 1.84 15 9 C 0.19 4.39 2.37 -27.75 -0.07 4.32 15 10 H 0.04 0.99 8.01 -51.93 -0.42 0.58 15 11 C -0.60 -15.38 8.80 -34.44 -0.30 -15.68 15 12 H 0.07 1.76 7.74 -52.48 -0.41 1.36 15 13 C 0.03 0.93 5.40 -17.82 -0.10 0.83 15 14 N -0.86 -24.94 13.53 55.43 0.75 -24.19 15 15 Si 1.08 23.06 29.90 -169.99 -5.08 17.97 15 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 17 H -0.28 -5.99 7.11 56.52 0.40 -5.58 15 18 H -0.28 -5.64 7.11 56.52 0.40 -5.23 15 19 O -0.35 -8.89 9.01 -43.77 -0.39 -9.28 15 20 C 0.51 11.29 7.78 35.56 0.28 11.57 15 21 O -0.45 -10.77 17.92 -18.97 -0.34 -11.11 15 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.10 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.15 2.33 8.06 -52.49 -0.42 1.90 15 26 H 0.41 6.87 7.01 -40.82 -0.29 6.59 15 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 29 H 0.28 8.37 6.47 -40.82 -0.26 8.11 15 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -30.07 264.77 -4.53 -34.60 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.70 Total: 4.85 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 0.23 Total: 11.29 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.47 Total: -37.48 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.44 Total: -35.23 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.97 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.07 -4.53 -34.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923510.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.618 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds