Wall clock time and date at job start Mon Mar 30 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34894 * 116.99918 * 2 1 4 4 O 1.21599 * 120.00377 * 0.02562 * 3 2 1 5 5 C 1.46324 * 119.99736 * 179.97438 * 3 2 1 6 6 C 1.35586 * 119.99797 * 180.02562 * 5 3 2 7 7 N 1.39328 * 122.32713 * 359.97438 * 6 5 3 8 8 C 1.47330 * 116.54083 * 219.84401 * 7 6 5 9 9 C 1.53247 * 108.78860 * 310.32228 * 8 7 6 10 10 H 1.08996 * 109.47498 * 295.03644 * 9 8 7 11 11 C 1.50703 * 109.47218 * 175.03574 * 9 8 7 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 O 1.45619 * 109.46259 * 55.04101 * 9 8 7 20 20 C 1.35870 * 115.25363 * 304.32377 * 19 9 8 21 21 O 1.21385 * 121.98656 * 225.63251 * 20 19 9 22 22 H 1.08997 * 109.47243 * 300.00137 * 1 2 3 23 23 H 1.09000 * 109.46903 * 59.99990 * 1 2 3 24 24 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00304 * 0.02562 * 5 3 2 26 26 H 0.96993 * 121.73284 * 39.86642 * 7 6 5 27 27 H 1.08997 * 109.58956 * 190.52826 * 8 7 6 28 28 H 1.08999 * 109.58382 * 70.11035 * 8 7 6 29 29 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2218 0.0005 5 6 3.5257 1.2785 0.0006 6 6 4.1412 2.4865 0.0011 7 7 3.4305 3.6849 0.0006 8 6 3.9657 4.7674 -0.8434 9 6 5.4595 4.9335 -0.5447 10 1 5.5892 5.2703 0.4838 11 6 6.0496 5.9526 -1.4850 12 1 5.4234 6.4342 -2.2215 13 6 7.3890 6.2702 -1.4052 14 7 8.1514 5.6842 -0.5081 15 14 8.1202 7.5339 -2.5704 16 1 8.6097 6.8526 -3.7958 17 1 9.2521 8.2259 -1.9032 18 1 7.0802 8.5280 -2.9386 19 8 6.1356 3.6566 -0.7263 20 6 5.6325 2.6256 0.0017 21 8 6.3492 1.8623 0.6159 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 4.1139 0.3727 0.0006 26 1 2.6252 3.8006 0.5288 27 1 3.4428 5.6973 -0.6202 28 1 3.8294 4.5126 -1.8944 29 1 7.7715 5.0282 0.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923510.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:25 Heat of formation + Delta-G solvation = -163.157376 kcal Electronic energy + Delta-G solvation = -17227.603930 eV Core-core repulsion = 14115.922786 eV Total energy + Delta-G solvation = -3111.681144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.79844 -41.08185 -38.75965 -37.83174 -36.53124 -35.12584 -33.05541 -30.33082 -28.65280 -26.27333 -26.02788 -24.14668 -22.34960 -20.66026 -19.50344 -19.23525 -18.36501 -17.79130 -17.34962 -17.19208 -16.97666 -16.37536 -15.80710 -15.61099 -15.16172 -14.52812 -14.38463 -14.23238 -13.94625 -13.40162 -13.00728 -12.91200 -12.63251 -12.11115 -12.03142 -11.87379 -11.79087 -11.63757 -11.21649 -10.73980 -10.71544 -9.17999 -8.81185 -6.68604 -0.57020 0.90413 1.53053 1.58356 1.65750 1.83013 1.83393 2.15513 2.31886 2.53123 2.91363 3.36185 3.89340 4.01326 4.17488 4.32346 4.35279 4.44101 4.52652 4.59960 4.72663 4.89464 5.24852 5.39729 5.76340 5.95756 6.05300 6.18615 6.36783 6.57448 6.72457 7.24948 8.55787 Molecular weight = 241.08amu Principal moments of inertia in cm(-1) A = 0.048457 B = 0.005807 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.694822 B = 4820.856458 C = 5232.357369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.511 3.489 4 O -0.536 6.536 5 C -0.229 4.229 6 C 0.181 3.819 7 N -0.723 5.723 8 C 0.113 3.887 9 C 0.182 3.818 10 H 0.019 0.981 11 C -0.613 4.613 12 H 0.087 0.913 13 C -0.017 4.017 14 N -0.902 5.902 15 Si 1.126 2.874 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.254 1.254 19 O -0.385 6.385 20 C 0.505 3.495 21 O -0.477 6.477 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.133 0.867 25 H 0.166 0.834 26 H 0.423 0.577 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 -5.751 -0.560 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.360 3.640 4 O -0.428 6.428 5 C -0.258 4.258 6 C 0.071 3.929 7 N -0.363 5.363 8 C -0.011 4.011 9 C 0.131 3.869 10 H 0.036 0.964 11 C -0.649 4.649 12 H 0.106 0.894 13 C -0.221 4.221 14 N -0.536 5.536 15 Si 0.945 3.055 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.178 1.178 19 O -0.306 6.306 20 C 0.345 3.655 21 O -0.361 6.361 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.151 0.849 25 H 0.184 0.816 26 H 0.267 0.733 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.376 -4.918 -0.856 13.345 hybrid contribution -1.673 -0.977 0.954 2.160 sum -14.049 -5.894 0.098 15.236 Atomic orbital electron populations 1.23568 0.74317 1.05783 1.02614 1.86599 1.25270 1.31517 1.84233 1.20804 0.88878 0.81588 0.72706 1.90722 1.67513 1.36354 1.48236 1.21746 0.91019 0.97083 1.15922 1.20931 0.89989 0.88690 0.93283 1.45241 1.30594 1.10034 1.50479 1.22265 0.92920 0.91127 0.94741 1.21454 0.90258 0.77727 0.97480 0.96355 1.22327 0.98598 1.21248 1.22756 0.89449 1.27677 0.95075 1.00523 0.98795 1.70807 1.39577 1.25390 1.17793 0.82851 0.75895 0.73417 0.73335 1.20163 1.20984 1.17827 1.87495 1.62170 1.20596 1.60290 1.22284 0.87741 0.80856 0.74619 1.90711 1.64170 1.44993 1.36245 0.91755 0.91955 0.84861 0.81637 0.73303 0.86168 0.91017 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 15 2 O -0.36 -8.89 10.58 -58.08 -0.61 -9.50 15 3 C 0.51 15.08 7.89 69.92 0.55 15.63 15 4 O -0.54 -17.10 13.86 19.51 0.27 -16.83 15 5 C -0.23 -7.21 9.93 23.76 0.24 -6.97 15 6 C 0.18 6.64 6.48 40.46 0.26 6.91 15 7 N -0.72 -24.84 5.00 -329.85 -1.65 -26.49 15 8 C 0.11 4.13 6.44 86.30 0.56 4.69 15 9 C 0.18 8.66 2.37 29.93 0.07 8.73 15 10 H 0.02 0.95 8.01 -2.39 -0.02 0.93 15 11 C -0.61 -31.29 8.80 25.60 0.23 -31.06 15 12 H 0.09 4.10 7.74 -2.91 -0.02 4.08 15 13 C -0.02 -0.89 5.40 84.65 0.46 -0.43 15 14 N -0.90 -53.98 13.53 21.45 0.29 -53.69 15 15 Si 1.13 46.10 29.90 68.60 2.05 48.15 15 16 H -0.28 -10.93 7.11 99.48 0.71 -10.23 15 17 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 18 H -0.25 -9.12 7.11 99.48 0.71 -8.42 15 19 O -0.39 -19.93 9.01 -68.73 -0.62 -20.55 15 20 C 0.50 22.94 7.78 70.95 0.55 23.49 15 21 O -0.48 -23.18 17.92 20.01 0.36 -22.82 15 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 15 24 H 0.13 1.27 8.14 -2.39 -0.02 1.25 15 25 H 0.17 4.72 8.06 -2.91 -0.02 4.69 15 26 H 0.42 13.20 7.01 -92.71 -0.65 12.55 15 27 H 0.12 3.73 8.14 -2.39 -0.02 3.71 15 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 29 H 0.26 16.42 6.47 -92.71 -0.60 15.82 15 Total: -1.00 -65.95 264.77 4.91 -61.05 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.71 Total: 18.01 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 4.11 Total: 22.68 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.36 Total: -80.18 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.60 Total: -69.70 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.05 Total: 48.15 kcal Total: -65.95 4.91 -61.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923510.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.110 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds